Wall clock time and date at job start Wed Apr 1 2020 03:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46802 * 2 1 4 4 C 1.46501 * 120.00045 * 269.99983 * 3 2 1 5 5 C 1.53001 * 109.47236 * 270.00121 * 4 3 2 6 6 C 1.38910 * 120.00279 * 89.99900 * 3 2 1 7 7 C 1.39722 * 119.76973 * 0.02562 * 6 3 2 8 8 C 1.36140 * 120.37402 * 180.23517 * 7 6 3 9 9 C 1.40575 * 119.98093 * 359.49611 * 8 7 6 10 10 C 1.41377 * 120.09388 * 180.25428 * 9 8 7 11 11 C 1.38695 * 118.75398 * 180.24499 * 10 9 8 12 12 C 1.47132 * 120.59318 * 180.02562 * 11 10 9 13 13 O 1.21639 * 120.00580 * 180.02562 * 12 11 10 14 14 N 1.34782 * 119.99904 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00096 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46840 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00158 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99640 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00207 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47130 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46866 * 120.00241 * 20 18 16 23 23 H 1.48493 * 109.47381 * 240.00273 * 20 18 16 24 24 C 1.46605 * 118.82170 * 359.97438 * 11 10 9 25 25 O 1.21694 * 119.93611 * 179.97438 * 24 11 10 26 26 O 1.34371 * 120.13195 * 0.02562 * 24 11 10 27 27 C 1.35072 * 121.42168 * 359.95548 * 26 24 11 28 28 C 1.38661 * 119.79975 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46979 * 299.99901 * 1 2 3 31 31 H 1.08998 * 109.47344 * 60.00257 * 1 2 3 32 32 H 1.08993 * 109.47373 * 240.00282 * 2 1 3 33 33 H 1.09006 * 109.47190 * 119.99460 * 2 1 3 34 34 H 1.09001 * 109.46890 * 30.00157 * 4 3 2 35 35 H 1.08994 * 109.47473 * 149.99508 * 4 3 2 36 36 H 1.08990 * 109.47376 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47210 * 299.99840 * 5 4 3 38 38 H 1.09003 * 109.47136 * 59.99346 * 5 4 3 39 39 H 1.08002 * 119.81092 * 359.95112 * 7 6 3 40 40 H 1.08001 * 120.01266 * 179.71692 * 8 7 6 41 41 H 1.08002 * 120.62335 * 0.26510 * 10 9 8 42 42 H 0.97005 * 119.99589 * 0.02562 * 14 12 11 43 43 H 1.08993 * 109.46956 * 300.00206 * 15 14 12 44 44 H 1.08997 * 109.47008 * 60.00327 * 15 14 12 45 45 H 0.96999 * 119.99911 * 179.97438 * 19 18 16 46 46 H 1.07993 * 120.02361 * 0.04289 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8316 -1.7104 6 6 2.2498 2.0362 1.2030 7 6 2.0158 1.3728 2.4102 8 6 2.2340 2.0045 3.5963 9 6 2.7073 3.3281 3.6106 10 6 2.9398 3.9845 4.8410 11 6 3.4020 5.2921 4.8227 12 6 3.6580 6.0134 6.0792 13 8 4.0628 7.1602 6.0507 14 7 3.4441 5.4036 7.2620 15 6 3.6995 6.1217 8.5131 16 6 3.3842 5.2232 9.6813 17 1 3.0294 4.2179 9.5089 18 6 3.5497 5.6845 10.9700 19 7 3.9822 6.9086 11.1799 20 14 3.1581 4.5712 12.4180 21 1 2.6915 3.2533 11.9172 22 1 4.3792 4.3830 13.2420 23 1 2.0931 5.1919 13.2459 24 6 3.6319 5.9424 3.5290 25 8 4.0368 7.0893 3.4893 26 8 3.3955 5.2749 2.3870 27 6 2.9458 4.0013 2.3960 28 6 2.7136 3.3440 1.1974 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1385 36 1 3.8890 2.3450 -2.6545 37 1 4.3883 2.2157 -0.9508 38 1 3.8745 0.7623 -1.8407 39 1 1.6555 0.3547 2.4024 40 1 2.0469 1.4877 4.5260 41 1 2.7612 3.4772 5.7776 42 1 3.1216 4.4890 7.2847 43 1 4.7478 6.4170 8.5550 44 1 3.0697 7.0101 8.5573 45 1 4.0982 7.2332 12.0866 46 1 2.8928 3.8498 0.2602 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830672272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:20 Heat of formation + Delta-G solvation = -82.522302 kcal Electronic energy + Delta-G solvation = -29140.054469 eV Core-core repulsion = 24994.533549 eV Total energy + Delta-G solvation = -4145.520921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.90414 -40.80858 -40.29771 -38.91542 -37.56665 -36.16597 -35.34036 -34.17440 -33.47059 -31.78446 -31.31226 -29.62068 -28.70423 -26.03562 -25.45299 -25.16217 -24.33919 -23.43071 -22.68920 -21.70179 -19.92433 -19.73212 -18.72373 -18.33102 -17.90210 -17.70267 -17.08641 -17.03039 -16.73152 -16.41154 -16.05013 -15.83259 -15.71725 -15.21258 -14.96851 -14.67505 -14.62055 -14.42451 -14.24028 -14.18620 -13.98253 -13.95321 -13.48433 -13.25560 -13.16293 -12.87162 -12.83358 -12.73320 -12.70783 -12.33882 -12.17808 -11.97785 -11.89047 -11.71849 -11.51592 -11.42929 -10.83307 -10.80431 -10.30565 -9.87729 -9.81377 -8.35820 -8.25964 -6.43579 -1.00154 0.10734 0.64862 1.12530 1.32595 1.46286 1.48719 1.61944 1.98395 2.28058 2.30049 2.50505 2.76904 3.02467 3.09182 3.37958 3.49657 3.82984 3.88908 3.93171 4.07293 4.21449 4.25295 4.35925 4.45135 4.46826 4.48914 4.53056 4.64116 4.70195 4.80549 4.89726 4.98784 5.04167 5.07028 5.13781 5.16188 5.23629 5.28612 5.32787 5.42386 5.45799 5.46979 5.68827 5.84393 6.07613 6.14568 6.26442 6.36357 6.66090 6.87227 7.24825 7.45973 8.87022 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.002306 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.533327 B =12139.435763 C =13673.729617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.600 5.600 4 C 0.103 3.897 5 C -0.170 4.170 6 C 0.299 3.701 7 C -0.212 4.212 8 C 0.026 3.974 9 C -0.247 4.247 10 C 0.112 3.888 11 C -0.332 4.332 12 C 0.553 3.447 13 O -0.593 6.593 14 N -0.697 5.697 15 C 0.267 3.733 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.991 3.009 21 H -0.245 1.245 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.523 3.477 25 O -0.492 6.492 26 O -0.278 6.278 27 C 0.193 3.807 28 C -0.250 4.250 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.171 0.829 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.409 0.591 43 H -0.014 1.014 44 H -0.014 1.014 45 H 0.268 0.732 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -27.849 -28.189 40.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.302 5.302 4 C -0.019 4.019 5 C -0.228 4.228 6 C 0.188 3.812 7 C -0.233 4.233 8 C 0.007 3.993 9 C -0.250 4.250 10 C 0.092 3.908 11 C -0.338 4.338 12 C 0.342 3.658 13 O -0.476 6.476 14 N -0.348 5.348 15 C 0.144 3.856 16 C -0.589 4.589 17 H 0.111 0.889 18 C -0.201 4.201 19 N -0.573 5.573 20 Si 0.814 3.186 21 H -0.168 1.168 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.371 3.629 25 O -0.380 6.380 26 O -0.190 6.190 27 C 0.147 3.853 28 C -0.274 4.274 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.188 0.812 40 H 0.200 0.800 41 H 0.205 0.795 42 H 0.246 0.754 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.077 0.923 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.335 -26.410 -28.509 39.967 hybrid contribution 0.238 0.706 0.852 1.132 sum -9.097 -25.704 -27.657 38.837 Atomic orbital electron populations 1.22211 0.95359 1.03198 1.02198 1.21845 0.94595 0.80189 1.04978 1.47115 1.66191 1.14232 1.02711 1.21743 0.97480 0.98086 0.84631 1.22179 0.96135 1.02756 1.01758 1.17863 0.86595 0.88932 0.87763 1.20889 1.09932 1.02958 0.89562 1.21278 0.88009 0.89248 1.00720 1.18044 1.17373 0.99102 0.90440 1.22675 0.78983 0.89100 1.00044 1.21642 1.21594 0.98747 0.91780 1.18012 0.77889 0.85844 0.84092 1.90787 1.48548 1.20157 1.88065 1.45912 1.66331 1.17660 1.04897 1.18612 0.93861 0.92260 0.80843 1.21633 1.46262 1.00575 0.90381 0.88876 1.26181 0.94219 0.96859 1.02814 1.70181 1.46084 1.18486 1.22558 0.85024 0.77630 0.78847 0.77142 1.16765 1.20708 1.20703 1.20206 0.75661 0.84946 0.82044 1.90979 1.44205 1.17077 1.85766 1.83625 1.71358 1.26648 1.37344 1.19368 0.90924 0.79539 0.95487 1.19929 1.15819 0.95599 0.96028 0.89953 0.92836 0.92839 0.88573 0.88610 0.88094 0.90605 0.90556 0.93778 0.91625 0.81175 0.80028 0.79542 0.75372 0.99634 0.99622 0.92319 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.23 10.24 71.98 0.74 0.50 16 2 C 0.11 0.10 5.86 86.38 0.51 0.60 16 3 N -0.60 -3.57 2.59 -697.39 -1.80 -5.37 16 4 C 0.10 0.51 5.85 86.38 0.51 1.02 16 5 C -0.17 -0.97 10.24 71.98 0.74 -0.23 16 6 C 0.30 3.21 6.55 38.50 0.25 3.46 16 7 C -0.21 -1.58 9.12 22.14 0.20 -1.37 16 8 C 0.03 0.25 9.71 22.35 0.22 0.47 16 9 C -0.25 -4.78 5.74 -21.28 -0.12 -4.90 16 10 C 0.11 2.66 9.35 23.15 0.22 2.88 16 11 C -0.33 -12.59 6.05 -18.65 -0.11 -12.70 16 12 C 0.55 27.09 7.76 86.58 0.67 27.76 16 13 O -0.59 -36.52 15.45 15.79 0.24 -36.28 16 14 N -0.70 -31.86 5.50 -470.39 -2.59 -34.45 16 15 C 0.27 15.44 5.43 85.63 0.46 15.90 16 16 C -0.55 -30.10 9.28 25.60 0.24 -29.86 16 17 H 0.09 4.42 7.60 -2.91 -0.02 4.40 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 20 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 21 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.52 21.90 8.13 70.01 0.57 22.47 16 25 O -0.49 -25.74 16.30 25.94 0.42 -25.31 16 26 O -0.28 -9.27 9.80 12.69 0.12 -9.15 16 27 C 0.19 4.58 6.74 23.02 0.16 4.74 16 28 C -0.25 -4.26 9.11 22.50 0.21 -4.05 16 29 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 -0.14 8.07 -2.39 -0.02 -0.16 16 33 H 0.10 -0.11 6.15 -2.38 -0.01 -0.12 16 34 H 0.10 0.14 8.07 -2.39 -0.02 0.12 16 35 H 0.08 0.53 6.16 -2.39 -0.01 0.51 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.17 0.17 6.09 -2.91 -0.02 0.15 16 40 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 41 H 0.19 2.95 6.46 -2.91 -0.02 2.94 16 42 H 0.41 14.22 6.39 -92.70 -0.59 13.63 16 43 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 44 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.15 2.30 6.08 -2.91 -0.02 2.28 16 Total: -1.00 -94.67 386.97 5.05 -89.62 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.43 Total: 7.33 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 5.90 Total: 27.06 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -4.11 Total: -97.38 kcal Atomic # 8 Polarization: -71.53 SS G_CDS: 0.79 Total: -70.74 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -94.67 5.05 -89.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830672272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal (2) G-P(sol) polarization free energy of solvation -94.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds