Wall clock time and date at job start Wed Apr 1 2020 03:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47402 * 2 1 4 4 O 1.45194 * 109.46970 * 120.00790 * 2 1 3 5 5 C 1.34760 * 116.99807 * 269.99332 * 4 2 1 6 6 O 1.21513 * 119.99943 * 0.02562 * 5 4 2 7 7 C 1.47442 * 120.00013 * 180.02562 * 5 4 2 8 8 C 1.40293 * 119.83949 * 0.02562 * 7 5 4 9 9 C 1.36177 * 120.37384 * 179.97438 * 8 7 5 10 10 C 1.39936 * 119.96669 * 0.02562 * 9 8 7 11 11 C 1.46233 * 133.83137 * 180.02562 * 10 9 8 12 12 C 1.34470 * 107.03456 * 179.97438 * 11 10 9 13 13 N 1.36535 * 109.98070 * 359.97438 * 12 11 10 14 14 C 1.46504 * 125.06969 * 180.02562 * 13 12 11 15 15 C 1.37828 * 109.86204 * 359.97438 * 13 12 11 16 16 C 1.38661 * 133.37236 * 180.32647 * 15 13 12 17 17 C 1.50702 * 109.46758 * 240.00083 * 2 1 3 18 18 O 1.21279 * 120.00127 * 255.65286 * 17 2 1 19 19 N 1.34783 * 119.99764 * 75.37740 * 17 2 1 20 20 C 1.46495 * 120.00016 * 5.43448 * 19 17 2 21 21 C 1.46496 * 119.99686 * 185.43814 * 19 17 2 22 22 C 1.50697 * 109.47338 * 90.00156 * 21 19 17 23 23 H 1.08000 * 120.00014 * 359.97438 * 22 21 19 24 24 C 1.37886 * 120.00469 * 179.97438 * 22 21 19 25 25 N 1.31513 * 120.00357 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 119.99255 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47021 * 90.00459 * 26 24 22 28 28 H 1.48505 * 109.46643 * 210.00220 * 26 24 22 29 29 H 1.48499 * 109.47344 * 329.99723 * 26 24 22 30 30 H 1.09000 * 109.47032 * 65.10596 * 1 2 3 31 31 H 1.08999 * 109.47431 * 185.11112 * 1 2 3 32 32 H 1.08999 * 109.47017 * 305.10925 * 1 2 3 33 33 H 1.07997 * 119.81038 * 0.02562 * 8 7 5 34 34 H 1.08001 * 120.01502 * 179.97438 * 9 8 7 35 35 H 1.07998 * 126.48100 * 0.02562 * 11 10 9 36 36 H 1.08003 * 125.00678 * 179.97438 * 12 11 10 37 37 H 1.09002 * 109.47304 * 89.97393 * 14 13 12 38 38 H 1.09005 * 109.47000 * 209.97326 * 14 13 12 39 39 H 1.09001 * 109.47193 * 329.97043 * 14 13 12 40 40 H 1.07999 * 120.17559 * 359.91678 * 16 15 13 41 41 H 1.09004 * 109.46983 * 84.91502 * 20 19 17 42 42 H 1.09003 * 109.47332 * 204.91639 * 20 19 17 43 43 H 1.08996 * 109.47530 * 324.91799 * 20 19 17 44 44 H 1.09000 * 109.46932 * 209.99905 * 21 19 17 45 45 H 1.08998 * 109.47726 * 329.99958 * 21 19 17 46 46 H 0.96995 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2180 0.0667 2.2854 6 8 1.9971 1.2612 2.2548 7 6 2.7093 -0.5606 3.5259 8 6 2.9638 -1.9399 3.5573 9 6 3.4183 -2.5304 4.6971 10 6 3.6333 -1.7603 5.8455 11 6 4.1022 -2.0657 7.1965 12 6 4.1071 -0.9092 7.8827 13 7 3.6803 0.1105 7.0813 14 6 3.5586 1.5110 7.4939 15 6 3.3822 -0.3739 5.8258 16 6 2.9255 0.2208 4.6594 17 6 2.0323 -0.7104 -1.2305 18 8 2.4797 -1.8341 -1.1418 19 7 1.9790 -0.0990 -2.4305 20 6 1.5449 1.2971 -2.5227 21 6 2.3552 -0.8307 -3.6426 22 6 1.1390 -1.5103 -4.2171 23 1 0.1816 -1.4078 -3.7279 24 6 1.2484 -2.2630 -5.3672 25 7 0.1872 -2.8565 -5.8682 26 14 2.9043 -2.4396 -6.2136 27 1 3.6154 -3.6236 -5.6679 28 1 2.6975 -2.6158 -7.6736 29 1 3.7162 -1.2198 -5.9724 30 1 -0.3633 0.4326 -0.9322 31 1 -0.3634 -1.0235 0.0915 32 1 -0.3633 0.5910 0.8407 33 1 2.7991 -2.5365 2.6723 34 1 3.6119 -3.5928 4.7149 35 1 4.3909 -3.0363 7.5720 36 1 4.4047 -0.8027 8.9154 37 1 4.4972 2.0300 7.2994 38 1 2.7564 1.9874 6.9302 39 1 3.3316 1.5575 8.5590 40 1 2.7326 1.2830 4.6311 41 1 2.3949 1.9547 -2.3408 42 1 1.1442 1.4881 -3.5182 43 1 0.7724 1.4874 -1.7775 44 1 2.7625 -0.1343 -4.3757 45 1 3.1076 -1.5799 -3.3961 46 1 0.2641 -3.3856 -6.6774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869806356.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:48 Heat of formation + Delta-G solvation = -41.297429 kcal Electronic energy + Delta-G solvation = -29225.754699 eV Core-core repulsion = 25082.021423 eV Total energy + Delta-G solvation = -4143.733276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69169 -40.56809 -39.03145 -37.24147 -36.28723 -34.97966 -33.27813 -32.74695 -31.70263 -30.70462 -29.64045 -28.36577 -26.65563 -26.17465 -24.97804 -23.78381 -22.43967 -22.03247 -20.87321 -20.37647 -18.81559 -18.17398 -17.19298 -16.97139 -16.89817 -16.40097 -16.06030 -15.76639 -15.69312 -15.40139 -14.69329 -14.57611 -14.38603 -14.09623 -13.76546 -13.64000 -13.42620 -13.22308 -13.11782 -12.90786 -12.75446 -12.38841 -12.26309 -12.21873 -12.09026 -11.89734 -11.58220 -11.47148 -11.42500 -11.22699 -10.94270 -10.69590 -10.59079 -10.49456 -10.16051 -10.01202 -9.55712 -9.00270 -8.59884 -8.55939 -7.99676 -7.77220 -6.09900 -4.09252 0.40121 1.24102 2.13965 2.25297 2.59003 2.66588 3.17735 3.29682 3.35619 3.37847 3.68435 3.81619 4.27923 4.35836 4.39076 4.43875 4.60315 4.70741 4.78397 4.81666 4.98950 5.03389 5.04229 5.11678 5.15255 5.23332 5.24847 5.41096 5.50463 5.59597 5.68925 5.72952 5.76099 5.80479 6.07017 6.13877 6.23868 6.27916 6.38340 6.41640 6.43746 6.66344 6.82184 6.86402 6.91811 7.25726 7.58049 7.73093 8.12525 8.44217 8.83044 8.93455 9.49848 11.03194 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022259 B = 0.002149 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.615844 B =13025.244110 C =13683.132795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 H 0.104 0.896 4 O -0.319 6.319 5 C 0.512 3.488 6 O -0.514 6.514 7 C -0.105 4.105 8 C -0.088 4.088 9 C -0.085 4.085 10 C -0.076 4.076 11 C -0.211 4.211 12 C 0.062 3.938 13 N -0.485 5.485 14 C 0.076 3.924 15 C 0.074 3.926 16 C -0.053 4.053 17 C 0.513 3.487 18 O -0.519 6.519 19 N -0.592 5.592 20 C 0.073 3.927 21 C 0.216 3.784 22 C -0.532 4.532 23 H 0.076 0.924 24 C 0.073 3.927 25 N -0.896 5.896 26 Si 0.876 3.124 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.266 1.266 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 9.344 28.218 30.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.121 0.879 4 O -0.234 6.234 5 C 0.357 3.643 6 O -0.404 6.404 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.103 4.103 10 C -0.082 4.082 11 C -0.236 4.236 12 C -0.064 4.064 13 N -0.168 5.168 14 C -0.066 4.066 15 C -0.030 4.030 16 C -0.074 4.074 17 C 0.298 3.702 18 O -0.394 6.394 19 N -0.326 5.326 20 C -0.071 4.071 21 C 0.096 3.904 22 C -0.570 4.570 23 H 0.094 0.906 24 C -0.130 4.130 25 N -0.534 5.534 26 Si 0.703 3.297 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.190 1.190 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.188 0.812 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.514 9.318 28.159 30.367 hybrid contribution 0.630 0.137 -0.570 0.861 sum 7.144 9.455 27.588 30.026 Atomic orbital electron populations 1.22177 0.91832 1.04428 1.03831 1.22634 0.96217 0.97268 0.82416 0.87873 1.86682 1.76523 1.40821 1.19355 1.21093 0.74196 0.84933 0.84055 1.90798 1.49117 1.15960 1.84538 1.18623 1.06977 0.94294 0.90826 1.21038 0.97448 0.93229 0.99042 1.20262 0.99443 0.99855 0.90763 1.19486 1.01775 0.92109 0.94781 1.21747 1.10933 0.98332 0.92544 1.21898 1.01020 0.86704 0.96804 1.43788 1.56363 1.07986 1.08687 1.22005 1.03339 0.79341 1.01912 1.17947 1.05086 0.93404 0.86600 1.19973 0.98470 0.99859 0.89062 1.19773 0.79960 0.86717 0.83772 1.90691 1.44875 1.18395 1.85423 1.47730 1.65509 1.12362 1.06982 1.21870 0.99068 0.82236 1.03901 1.19735 0.97319 0.92364 0.81000 1.21318 0.95267 1.30744 1.09673 0.90630 1.24855 0.96570 0.94773 0.96784 1.69891 1.28892 1.32652 1.21954 0.86848 0.84580 0.79412 0.78848 1.19825 1.21050 1.19045 0.89352 0.90437 0.91189 0.83745 0.84965 0.83188 0.81198 0.91034 0.89865 0.89702 0.84806 0.93316 0.89896 0.91861 0.94877 0.94269 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.20 37.16 0.34 -2.13 16 2 C 0.07 1.25 2.14 -27.88 -0.06 1.19 16 3 H 0.10 1.60 6.35 -51.93 -0.33 1.27 16 4 O -0.32 -5.53 8.68 -47.19 -0.41 -5.94 16 5 C 0.51 7.97 7.86 34.48 0.27 8.24 16 6 O -0.51 -8.41 15.57 -19.28 -0.30 -8.71 16 7 C -0.10 -1.41 5.87 -104.96 -0.62 -2.03 16 8 C -0.09 -1.11 9.54 -39.55 -0.38 -1.49 16 9 C -0.08 -0.93 10.03 -39.69 -0.40 -1.32 16 10 C -0.08 -0.83 6.37 -105.04 -0.67 -1.50 16 11 C -0.21 -1.73 11.08 -37.70 -0.42 -2.15 16 12 C 0.06 0.41 11.28 -16.79 -0.19 0.22 16 13 N -0.48 -3.86 3.17 -121.84 -0.39 -4.25 16 14 C 0.08 0.33 11.02 59.85 0.66 0.99 16 15 C 0.07 0.80 6.80 -84.00 -0.57 0.23 16 16 C -0.05 -0.63 9.49 -39.01 -0.37 -1.00 16 17 C 0.51 10.96 6.96 -10.98 -0.08 10.88 16 18 O -0.52 -13.20 16.13 -13.57 -0.22 -13.42 16 19 N -0.59 -12.38 2.86 -182.96 -0.52 -12.90 16 20 C 0.07 1.13 9.80 59.84 0.59 1.72 16 21 C 0.22 5.29 4.25 -5.20 -0.02 5.27 16 22 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 23 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 24 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 25 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 26 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.27 -6.14 6.54 56.52 0.37 -5.78 16 30 H 0.09 1.26 6.24 -51.93 -0.32 0.93 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.14 1.87 7.58 -52.49 -0.40 1.47 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.13 1.44 7.62 -52.49 -0.40 1.04 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 43 H 0.06 0.84 4.86 -51.93 -0.25 0.59 16 44 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 45 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -36.90 389.61 -8.45 -45.34 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.24 Total: 0.15 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.35 Total: 3.67 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.14 Total: -43.83 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.93 Total: -28.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.90 -8.45 -45.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869806356.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.047 kcal (2) G-P(sol) polarization free energy of solvation -36.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds