Wall clock time and date at job start Wed Apr 1 2020 03:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46602 * 2 1 4 4 O 1.45204 * 109.46975 * 240.00122 * 2 1 3 5 5 C 1.34758 * 117.00055 * 89.99854 * 4 2 1 6 6 O 1.21507 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.47443 * 119.99786 * 179.97438 * 5 4 2 8 8 C 1.40288 * 119.83727 * 0.02562 * 7 5 4 9 9 C 1.36174 * 120.37509 * 179.97438 * 8 7 5 10 10 C 1.39936 * 119.96181 * 359.97343 * 9 8 7 11 11 C 1.46244 * 133.82704 * 180.02562 * 10 9 8 12 12 C 1.34472 * 107.03224 * 180.02562 * 11 10 9 13 13 N 1.36548 * 109.97958 * 0.02562 * 12 11 10 14 14 C 1.46500 * 125.06736 * 180.02562 * 13 12 11 15 15 C 1.37823 * 109.85825 * 359.97438 * 13 12 11 16 16 C 1.38668 * 133.36772 * 180.28632 * 15 13 12 17 17 C 1.50693 * 109.47433 * 119.99456 * 2 1 3 18 18 O 1.21283 * 119.99993 * 106.83559 * 17 2 1 19 19 N 1.34777 * 120.00459 * 286.83956 * 17 2 1 20 20 C 1.46500 * 119.99806 * 4.66120 * 19 17 2 21 21 C 1.46495 * 119.99998 * 184.38220 * 19 17 2 22 22 C 1.50704 * 109.47321 * 270.27431 * 21 19 17 23 23 H 1.07999 * 120.00020 * 0.02562 * 22 21 19 24 24 C 1.37876 * 119.99771 * 179.97438 * 22 21 19 25 25 N 1.31518 * 119.99636 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00189 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47145 * 90.00156 * 26 24 22 28 28 H 1.48506 * 109.46992 * 209.99801 * 26 24 22 29 29 H 1.48498 * 109.47180 * 329.99851 * 26 24 22 30 30 H 1.08997 * 109.47212 * 49.82179 * 1 2 3 31 31 H 1.08995 * 109.46845 * 169.82650 * 1 2 3 32 32 H 1.08998 * 109.47165 * 289.82188 * 1 2 3 33 33 H 1.08003 * 119.81720 * 359.97438 * 8 7 5 34 34 H 1.08000 * 120.02319 * 179.97438 * 9 8 7 35 35 H 1.07994 * 126.48269 * 359.97438 * 11 10 9 36 36 H 1.08000 * 125.00919 * 179.97438 * 12 11 10 37 37 H 1.09008 * 109.46733 * 89.97288 * 14 13 12 38 38 H 1.08996 * 109.47042 * 209.96881 * 14 13 12 39 39 H 1.09000 * 109.47268 * 329.97728 * 14 13 12 40 40 H 1.08001 * 120.17037 * 359.92110 * 16 15 13 41 41 H 1.08995 * 109.47190 * 266.44608 * 20 19 17 42 42 H 1.09003 * 109.47306 * 26.44211 * 20 19 17 43 43 H 1.09001 * 109.47589 * 146.44208 * 20 19 17 44 44 H 1.09000 * 109.47321 * 30.27586 * 21 19 17 45 45 H 1.09005 * 109.47230 * 150.27868 * 21 19 17 46 46 H 0.97001 * 119.99626 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0670 -2.2855 6 8 1.9969 1.2614 -2.2548 7 6 2.7092 -0.5603 -3.5261 8 6 2.9628 -1.9397 -3.5578 9 6 3.4162 -2.5304 -4.6979 10 6 3.6311 -1.7601 -5.8463 11 6 4.0982 -2.0658 -7.1980 12 6 4.1040 -0.9092 -7.8838 13 7 3.6794 0.1110 -7.0815 14 6 3.5581 1.5115 -7.4940 15 6 3.3809 -0.3737 -5.8263 16 6 2.9155 0.2194 -4.6625 17 6 2.0324 -0.7102 1.2304 18 8 2.5214 -1.8160 1.1352 19 7 1.9383 -0.1168 2.4369 20 6 1.2564 1.1733 2.5673 21 6 2.5127 -0.7646 3.6186 22 6 1.4795 -1.6600 4.2526 23 1 0.4938 -1.7390 3.8184 24 6 1.7931 -2.3792 5.3864 25 7 0.8916 -3.1610 5.9394 26 14 3.4982 -2.2431 6.1370 27 1 3.5143 -1.1413 7.1325 28 1 3.8473 -3.5213 6.8077 29 1 4.4885 -1.9586 5.0677 30 1 -0.3633 0.6630 -0.7852 31 1 -0.3633 -1.0115 -0.1815 32 1 -0.3633 0.3485 0.9668 33 1 2.7974 -2.5366 -2.6731 34 1 3.6100 -3.5927 -4.7159 35 1 4.3852 -3.0367 -7.5740 36 1 4.4014 -0.8026 -8.9165 37 1 2.5589 1.6877 -7.8923 38 1 3.7258 2.1594 -6.6337 39 1 4.2994 1.7293 -8.2629 40 1 2.7167 1.2806 -4.6360 41 1 1.9862 1.9793 2.4923 42 1 0.5184 1.2762 1.7718 43 1 0.7571 1.2241 3.5349 44 1 3.3768 -1.3595 3.3230 45 1 2.8230 -0.0040 4.3351 46 1 1.1121 -3.6667 6.7372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869806357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:51 Heat of formation + Delta-G solvation = -36.392759 kcal Electronic energy + Delta-G solvation = -29227.129754 eV Core-core repulsion = 25083.609161 eV Total energy + Delta-G solvation = -4143.520593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69073 -40.57808 -39.03978 -37.24052 -36.29045 -34.98455 -33.27919 -32.78412 -31.71857 -30.70418 -29.65348 -28.28639 -26.65516 -26.27816 -24.93259 -23.74423 -22.43912 -22.05631 -20.87634 -20.38386 -18.86155 -18.17780 -17.19126 -16.94832 -16.90124 -16.38840 -16.05634 -15.77935 -15.67867 -15.43623 -14.66523 -14.55449 -14.38198 -14.09556 -13.77714 -13.72184 -13.42596 -13.23717 -13.17235 -12.91477 -12.76425 -12.44529 -12.32300 -12.19051 -12.08719 -11.79264 -11.61940 -11.47907 -11.35456 -11.22655 -10.89184 -10.69405 -10.57149 -10.50482 -10.10439 -10.01087 -9.54041 -8.97952 -8.58654 -8.55851 -7.99596 -7.76505 -6.07948 -4.06844 0.40114 1.24257 2.13856 2.25117 2.58569 2.66468 3.19470 3.27861 3.36404 3.40598 3.68536 3.81162 4.28027 4.35873 4.40495 4.43861 4.59694 4.70653 4.76383 4.81366 4.98665 5.01195 5.03880 5.10641 5.15154 5.23880 5.25631 5.38690 5.45057 5.59681 5.68436 5.69061 5.74667 5.82247 6.06424 6.13675 6.24177 6.27674 6.38387 6.41516 6.43229 6.63591 6.82294 6.86490 6.93492 7.26261 7.59885 7.72694 8.13782 8.46057 8.85231 8.95905 9.51762 11.05331 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.002167 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.349879 B =12915.288441 C =13600.906244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.105 0.895 4 O -0.318 6.318 5 C 0.512 3.488 6 O -0.514 6.514 7 C -0.105 4.105 8 C -0.088 4.088 9 C -0.085 4.085 10 C -0.076 4.076 11 C -0.210 4.210 12 C 0.062 3.938 13 N -0.485 5.485 14 C 0.076 3.924 15 C 0.074 3.926 16 C -0.053 4.053 17 C 0.510 3.490 18 O -0.514 6.514 19 N -0.592 5.592 20 C 0.065 3.935 21 C 0.217 3.783 22 C -0.528 4.528 23 H 0.076 0.924 24 C 0.072 3.928 25 N -0.896 5.896 26 Si 0.875 3.125 27 H -0.275 1.275 28 H -0.283 1.283 29 H -0.264 1.264 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.134 0.866 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.029 0.971 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 10.125 -28.483 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 H 0.122 0.878 4 O -0.233 6.233 5 C 0.358 3.642 6 O -0.404 6.404 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.103 4.103 10 C -0.081 4.081 11 C -0.235 4.235 12 C -0.064 4.064 13 N -0.168 5.168 14 C -0.066 4.066 15 C -0.030 4.030 16 C -0.074 4.074 17 C 0.295 3.705 18 O -0.389 6.389 19 N -0.326 5.326 20 C -0.078 4.078 21 C 0.097 3.903 22 C -0.567 4.567 23 H 0.094 0.906 24 C -0.130 4.130 25 N -0.535 5.535 26 Si 0.701 3.299 27 H -0.201 1.201 28 H -0.209 1.209 29 H -0.188 1.188 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.168 0.832 36 H 0.188 0.812 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.581 10.094 -28.431 30.516 hybrid contribution 0.679 0.281 0.551 0.918 sum 5.260 10.375 -27.881 30.210 Atomic orbital electron populations 1.22335 0.92104 1.04362 1.04155 1.22614 0.96066 0.97311 0.82527 0.87768 1.86687 1.76538 1.40762 1.19316 1.21091 0.74169 0.84930 0.84052 1.90795 1.49130 1.15965 1.84538 1.18616 1.07034 0.94329 0.90741 1.21039 0.97459 0.93211 0.99042 1.20263 0.99418 0.99868 0.90759 1.19488 1.01776 0.92102 0.94784 1.21751 1.10946 0.98340 0.92508 1.21901 1.01102 0.86704 0.96726 1.43788 1.56424 1.07964 1.08659 1.22002 1.03116 0.79345 1.02126 1.17945 1.05035 0.93443 0.86610 1.19971 0.98460 0.99873 0.89069 1.19780 0.80591 0.86423 0.83754 1.90710 1.44092 1.18504 1.85591 1.47729 1.56121 1.21030 1.07723 1.22030 0.96983 0.84925 1.03879 1.19715 0.95438 0.93189 0.81930 1.21307 0.99646 1.25336 1.10402 0.90640 1.24859 0.96968 0.94642 0.96581 1.69897 1.34072 1.28217 1.21281 0.86864 0.85290 0.77926 0.79775 1.20105 1.20898 1.18832 0.91096 0.90407 0.88936 0.83734 0.84955 0.83183 0.81197 0.91037 0.89870 0.89705 0.84811 0.93274 0.91116 0.90117 0.94078 0.95305 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.09 37.16 0.34 -2.13 16 2 C 0.07 1.24 2.17 -27.88 -0.06 1.18 16 3 H 0.10 1.60 6.75 -51.92 -0.35 1.25 16 4 O -0.32 -5.50 8.67 -47.23 -0.41 -5.91 16 5 C 0.51 7.96 7.86 34.48 0.27 8.23 16 6 O -0.51 -8.39 15.57 -19.27 -0.30 -8.69 16 7 C -0.10 -1.41 5.87 -104.97 -0.62 -2.03 16 8 C -0.09 -1.11 9.53 -39.55 -0.38 -1.49 16 9 C -0.08 -0.93 10.03 -39.69 -0.40 -1.33 16 10 C -0.08 -0.83 6.37 -105.04 -0.67 -1.50 16 11 C -0.21 -1.73 11.08 -37.70 -0.42 -2.15 16 12 C 0.06 0.41 11.28 -16.78 -0.19 0.23 16 13 N -0.49 -3.87 3.18 -121.85 -0.39 -4.26 16 14 C 0.08 0.33 11.02 59.85 0.66 0.99 16 15 C 0.07 0.80 6.80 -84.00 -0.57 0.23 16 16 C -0.05 -0.63 9.49 -39.01 -0.37 -1.00 16 17 C 0.51 10.89 7.00 -10.99 -0.08 10.81 16 18 O -0.51 -13.20 16.18 -13.73 -0.22 -13.43 16 19 N -0.59 -12.38 2.86 -182.96 -0.52 -12.90 16 20 C 0.07 1.00 9.85 59.85 0.59 1.59 16 21 C 0.22 5.34 4.21 -5.19 -0.02 5.32 16 22 C -0.53 -15.18 9.94 -34.44 -0.34 -15.53 16 23 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 24 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 25 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 26 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.25 5.49 -51.93 -0.28 0.96 16 33 H 0.14 1.88 7.58 -52.48 -0.40 1.48 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 38 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 39 H 0.08 0.18 8.13 -51.93 -0.42 -0.24 16 40 H 0.13 1.44 7.62 -52.49 -0.40 1.04 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.92 4.14 -51.93 -0.21 0.70 16 43 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.04 1.09 6.55 -51.93 -0.34 0.75 16 45 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -37.32 388.76 -8.42 -45.74 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.19 Total: 0.13 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.35 Total: 3.44 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.14 Total: -44.05 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.93 Total: -28.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.32 -8.42 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869806357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.347 kcal (2) G-P(sol) polarization free energy of solvation -37.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds