Wall clock time and date at job start Wed Apr 1 2020 03:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46602 * 2 1 4 4 O 1.45204 * 109.46975 * 240.00122 * 2 1 3 5 5 C 1.34758 * 117.00055 * 89.99854 * 4 2 1 6 6 O 1.21507 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.47443 * 119.99786 * 179.97438 * 5 4 2 8 8 C 1.40288 * 119.83727 * 0.02562 * 7 5 4 9 9 C 1.36174 * 120.37509 * 179.97438 * 8 7 5 10 10 C 1.39936 * 119.96181 * 359.97343 * 9 8 7 11 11 C 1.46244 * 133.82704 * 180.02562 * 10 9 8 12 12 C 1.34472 * 107.03224 * 180.02562 * 11 10 9 13 13 N 1.36548 * 109.97958 * 0.02562 * 12 11 10 14 14 C 1.46500 * 125.06736 * 180.02562 * 13 12 11 15 15 C 1.37823 * 109.85825 * 359.97438 * 13 12 11 16 16 C 1.38668 * 133.36772 * 180.28632 * 15 13 12 17 17 C 1.50693 * 109.47433 * 119.99456 * 2 1 3 18 18 O 1.21283 * 119.99993 * 106.83559 * 17 2 1 19 19 N 1.34777 * 120.00459 * 286.83956 * 17 2 1 20 20 C 1.46500 * 119.99806 * 4.66120 * 19 17 2 21 21 C 1.46495 * 119.99998 * 184.38220 * 19 17 2 22 22 C 1.50704 * 109.47321 * 270.27431 * 21 19 17 23 23 H 1.07999 * 120.00020 * 0.02562 * 22 21 19 24 24 C 1.37876 * 119.99771 * 179.97438 * 22 21 19 25 25 N 1.31518 * 119.99636 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00189 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47145 * 90.00156 * 26 24 22 28 28 H 1.48506 * 109.46992 * 209.99801 * 26 24 22 29 29 H 1.48498 * 109.47180 * 329.99851 * 26 24 22 30 30 H 1.08997 * 109.47212 * 49.82179 * 1 2 3 31 31 H 1.08995 * 109.46845 * 169.82650 * 1 2 3 32 32 H 1.08998 * 109.47165 * 289.82188 * 1 2 3 33 33 H 1.08003 * 119.81720 * 359.97438 * 8 7 5 34 34 H 1.08000 * 120.02319 * 179.97438 * 9 8 7 35 35 H 1.07994 * 126.48269 * 359.97438 * 11 10 9 36 36 H 1.08000 * 125.00919 * 179.97438 * 12 11 10 37 37 H 1.09008 * 109.46733 * 89.97288 * 14 13 12 38 38 H 1.08996 * 109.47042 * 209.96881 * 14 13 12 39 39 H 1.09000 * 109.47268 * 329.97728 * 14 13 12 40 40 H 1.08001 * 120.17037 * 359.92110 * 16 15 13 41 41 H 1.08995 * 109.47190 * 266.44608 * 20 19 17 42 42 H 1.09003 * 109.47306 * 26.44211 * 20 19 17 43 43 H 1.09001 * 109.47589 * 146.44208 * 20 19 17 44 44 H 1.09000 * 109.47321 * 30.27586 * 21 19 17 45 45 H 1.09005 * 109.47230 * 150.27868 * 21 19 17 46 46 H 0.97001 * 119.99626 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0670 -2.2855 6 8 1.9969 1.2614 -2.2548 7 6 2.7092 -0.5603 -3.5261 8 6 2.9628 -1.9397 -3.5578 9 6 3.4162 -2.5304 -4.6979 10 6 3.6311 -1.7601 -5.8463 11 6 4.0982 -2.0658 -7.1980 12 6 4.1040 -0.9092 -7.8838 13 7 3.6794 0.1110 -7.0815 14 6 3.5581 1.5115 -7.4940 15 6 3.3809 -0.3737 -5.8263 16 6 2.9155 0.2194 -4.6625 17 6 2.0324 -0.7102 1.2304 18 8 2.5214 -1.8160 1.1352 19 7 1.9383 -0.1168 2.4369 20 6 1.2564 1.1733 2.5673 21 6 2.5127 -0.7646 3.6186 22 6 1.4795 -1.6600 4.2526 23 1 0.4938 -1.7390 3.8184 24 6 1.7931 -2.3792 5.3864 25 7 0.8916 -3.1610 5.9394 26 14 3.4982 -2.2431 6.1370 27 1 3.5143 -1.1413 7.1325 28 1 3.8473 -3.5213 6.8077 29 1 4.4885 -1.9586 5.0677 30 1 -0.3633 0.6630 -0.7852 31 1 -0.3633 -1.0115 -0.1815 32 1 -0.3633 0.3485 0.9668 33 1 2.7974 -2.5366 -2.6731 34 1 3.6100 -3.5927 -4.7159 35 1 4.3852 -3.0367 -7.5740 36 1 4.4014 -0.8026 -8.9165 37 1 2.5589 1.6877 -7.8923 38 1 3.7258 2.1594 -6.6337 39 1 4.2994 1.7293 -8.2629 40 1 2.7167 1.2806 -4.6360 41 1 1.9862 1.9793 2.4923 42 1 0.5184 1.2762 1.7718 43 1 0.7571 1.2241 3.5349 44 1 3.3768 -1.3595 3.3230 45 1 2.8230 -0.0040 4.3351 46 1 1.1121 -3.6667 6.7372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869806357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:51 Heat of formation + Delta-G solvation = -58.725142 kcal Electronic energy + Delta-G solvation = -29228.098159 eV Core-core repulsion = 25083.609161 eV Total energy + Delta-G solvation = -4144.488998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.43559 -41.83009 -40.58892 -38.18071 -37.50722 -36.74582 -34.84274 -33.92823 -33.21700 -31.46841 -30.57368 -30.09123 -27.73493 -27.16935 -26.15201 -25.19647 -23.68214 -23.21915 -21.83300 -21.23813 -20.45801 -19.21269 -19.11082 -18.28886 -17.95583 -17.54046 -17.29004 -17.05948 -16.79897 -16.36467 -16.23461 -16.03744 -15.40396 -15.12978 -14.95983 -14.84921 -14.57392 -14.34508 -14.15918 -13.93915 -13.84653 -13.77273 -13.64661 -13.51619 -13.20893 -13.17395 -12.93396 -12.87436 -12.55059 -12.28014 -12.26558 -12.11860 -12.06081 -11.95744 -11.75804 -11.73322 -10.81634 -10.78110 -10.68643 -9.51303 -9.34787 -8.68722 -8.33333 -6.38617 -0.50415 0.37535 1.14001 1.29463 1.32638 1.37965 1.48086 1.54154 1.82376 1.86284 2.31459 2.33096 2.79464 3.00234 3.33961 3.45535 3.64407 3.73792 3.79858 3.83492 3.92325 4.06331 4.18418 4.19797 4.40376 4.44413 4.48537 4.54554 4.61074 4.61489 4.67680 4.73093 4.74117 4.84577 4.91424 4.93598 4.97450 5.09615 5.16059 5.23515 5.43446 5.44531 5.52214 5.63635 5.70072 6.07460 6.21694 6.33085 6.44993 6.57498 6.62542 7.14144 7.28080 8.83460 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.002167 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.349879 B =12915.288441 C =13600.906244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.126 0.874 4 O -0.336 6.336 5 C 0.514 3.486 6 O -0.526 6.526 7 C -0.132 4.132 8 C -0.104 4.104 9 C -0.087 4.087 10 C -0.090 4.090 11 C -0.231 4.231 12 C 0.082 3.918 13 N -0.484 5.484 14 C 0.067 3.933 15 C 0.056 3.944 16 C -0.046 4.046 17 C 0.501 3.499 18 O -0.571 6.571 19 N -0.597 5.597 20 C 0.057 3.943 21 C 0.224 3.776 22 C -0.536 4.536 23 H 0.031 0.969 24 C 0.010 3.990 25 N -0.944 5.944 26 Si 0.948 3.052 27 H -0.249 1.249 28 H -0.282 1.282 29 H -0.256 1.256 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.216 0.784 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 12.490 -31.126 34.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.143 0.857 4 O -0.252 6.252 5 C 0.361 3.639 6 O -0.417 6.417 7 C -0.135 4.135 8 C -0.124 4.124 9 C -0.106 4.106 10 C -0.096 4.096 11 C -0.255 4.255 12 C -0.045 4.045 13 N -0.167 5.167 14 C -0.073 4.073 15 C -0.050 4.050 16 C -0.066 4.066 17 C 0.288 3.712 18 O -0.450 6.450 19 N -0.330 5.330 20 C -0.084 4.084 21 C 0.102 3.898 22 C -0.574 4.574 23 H 0.049 0.951 24 C -0.188 4.188 25 N -0.584 5.584 26 Si 0.770 3.230 27 H -0.173 1.173 28 H -0.208 1.208 29 H -0.181 1.181 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.187 0.813 36 H 0.232 0.768 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.105 12.534 -31.093 34.075 hybrid contribution 0.156 -0.447 1.159 1.251 sum 6.260 12.088 -29.934 32.884 Atomic orbital electron populations 1.22333 0.90114 1.04294 1.05584 1.22546 0.97338 0.97134 0.80665 0.85688 1.86699 1.76979 1.41671 1.19868 1.21423 0.73703 0.84806 0.83985 1.90761 1.50049 1.16188 1.84694 1.18592 1.09451 0.94827 0.90580 1.20951 0.98981 0.93101 0.99328 1.20438 0.98875 1.00796 0.90465 1.19897 1.01469 0.92377 0.95853 1.22087 1.11923 1.00140 0.91355 1.22659 0.98173 0.85590 0.98041 1.44154 1.55225 1.09656 1.07614 1.22306 1.04837 0.77275 1.02902 1.18051 1.05498 0.93785 0.87631 1.20008 0.97711 0.99964 0.88945 1.20619 0.79516 0.85951 0.85138 1.90670 1.46653 1.21107 1.86610 1.47824 1.55977 1.22512 1.06652 1.22372 0.98217 0.83022 1.04798 1.19434 0.93564 0.93284 0.83526 1.21512 0.98869 1.26469 1.10577 0.95073 1.25858 1.01723 0.94052 0.97155 1.70051 1.36673 1.29496 1.22141 0.85709 0.79296 0.78702 0.79245 1.17334 1.20784 1.18057 0.88552 0.91763 0.87995 0.85323 0.83332 0.81285 0.76754 0.89939 0.90133 0.86725 0.84147 0.89889 0.88604 0.90385 0.96186 0.92476 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 9.09 71.98 0.65 -4.03 16 2 C 0.08 2.76 2.17 29.85 0.06 2.82 16 3 H 0.13 3.69 6.75 -2.38 -0.02 3.67 16 4 O -0.34 -12.10 8.67 -50.40 -0.44 -12.54 16 5 C 0.51 16.37 7.86 70.25 0.55 16.93 16 6 O -0.53 -16.99 15.57 19.81 0.31 -16.68 16 7 C -0.13 -3.71 5.87 -20.09 -0.12 -3.82 16 8 C -0.10 -2.81 9.53 22.29 0.21 -2.60 16 9 C -0.09 -1.97 10.03 22.20 0.22 -1.74 16 10 C -0.09 -1.88 6.37 -20.13 -0.13 -2.01 16 11 C -0.23 -3.22 11.08 23.49 0.26 -2.96 16 12 C 0.08 0.79 11.28 83.10 0.94 1.72 16 13 N -0.48 -6.33 3.18 -539.41 -1.71 -8.05 16 14 C 0.07 0.37 11.02 127.77 1.41 1.78 16 15 C 0.06 1.15 6.80 38.96 0.26 1.42 16 16 C -0.05 -1.08 9.49 22.64 0.21 -0.86 16 17 C 0.50 21.97 7.00 87.65 0.61 22.59 16 18 O -0.57 -30.95 16.18 15.40 0.25 -30.70 16 19 N -0.60 -25.02 2.86 -851.14 -2.43 -27.46 16 20 C 0.06 1.66 9.85 127.77 1.26 2.92 16 21 C 0.22 11.07 4.21 85.64 0.36 11.43 16 22 C -0.54 -31.81 9.94 25.60 0.25 -31.56 16 23 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 24 C 0.01 0.61 5.47 84.65 0.46 1.07 16 25 N -0.94 -60.04 13.96 21.45 0.30 -59.74 16 26 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 27 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 28 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 29 H -0.26 -11.72 6.54 99.48 0.65 -11.07 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 2.64 5.49 -2.39 -0.01 2.63 16 33 H 0.13 3.76 7.58 -2.91 -0.02 3.74 16 34 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 37 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.08 0.52 8.10 -2.39 -0.02 0.50 16 39 H 0.11 -0.02 8.13 -2.39 -0.02 -0.04 16 40 H 0.14 2.96 7.62 -2.91 -0.02 2.93 16 41 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 2.28 4.14 -2.39 -0.01 2.27 16 43 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 44 H 0.02 1.08 6.55 -2.39 -0.02 1.06 16 45 H 0.06 2.51 7.50 -2.38 -0.02 2.49 16 46 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -86.36 388.76 6.60 -79.76 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.95 Total: 15.72 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 7.50 Total: 13.08 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.85 Total: -95.24 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: 0.12 Total: -59.92 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -86.36 6.60 -79.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869806357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.031 kcal (2) G-P(sol) polarization free energy of solvation -86.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds