Wall clock time and date at job start Wed Apr 1 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99875 * 2 1 4 4 O 1.20827 * 120.00026 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99689 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47260 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47533 * 179.97438 * 6 5 3 8 8 C 1.37091 * 120.00223 * 264.49520 * 7 6 5 9 9 H 1.07997 * 119.99947 * 41.92651 * 8 7 6 10 10 C 1.38949 * 120.00207 * 221.91980 * 8 7 6 11 11 N 1.31411 * 120.00034 * 357.98182 * 10 8 7 12 12 Si 1.86800 * 120.00007 * 177.98026 * 10 8 7 13 13 H 1.48500 * 109.47146 * 90.00403 * 12 10 8 14 14 H 1.48506 * 109.46932 * 210.00326 * 12 10 8 15 15 H 1.48501 * 109.47256 * 330.00145 * 12 10 8 16 16 C 1.34785 * 119.99647 * 84.49476 * 7 6 5 17 17 O 1.21290 * 119.99613 * 183.62906 * 16 7 6 18 18 C 1.50696 * 119.99873 * 3.63547 * 16 7 6 19 19 H 1.08999 * 109.47276 * 320.80750 * 18 16 7 20 20 C 1.53002 * 109.47371 * 80.80964 * 18 16 7 21 21 C 1.53001 * 109.46861 * 200.80765 * 18 16 7 22 22 C 1.50702 * 109.47236 * 174.99977 * 21 18 16 23 23 C 1.38364 * 119.84555 * 89.99915 * 22 21 18 24 24 C 1.37948 * 120.14667 * 179.70557 * 23 22 21 25 25 C 1.39626 * 119.85161 * 0.27499 * 24 23 22 26 26 C 1.43195 * 120.15502 * 180.02562 * 25 24 23 27 27 N 9.49955 * 97.98889 * 277.17627 * 2 1 3 28 28 C 1.39634 * 119.69852 * 359.97438 * 25 24 23 29 29 C 1.37948 * 119.84451 * 0.02562 * 28 25 24 30 30 H 1.08997 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47596 * 300.00551 * 1 2 3 32 32 H 1.09002 * 109.47240 * 60.00337 * 1 2 3 33 33 H 1.08998 * 109.47863 * 59.99794 * 5 3 2 34 34 H 1.09004 * 109.47083 * 299.99202 * 5 3 2 35 35 H 1.09003 * 109.47041 * 59.99259 * 6 5 3 36 36 H 1.09000 * 109.47330 * 300.00117 * 6 5 3 37 37 H 0.96999 * 120.00099 * 184.09204 * 11 10 8 38 38 H 1.09006 * 109.46859 * 302.53463 * 20 18 16 39 39 H 1.08997 * 109.47394 * 62.53655 * 20 18 16 40 40 H 1.08998 * 109.47114 * 182.53698 * 20 18 16 41 41 H 1.08995 * 109.47150 * 55.00071 * 21 18 16 42 42 H 1.09007 * 109.46999 * 295.00013 * 21 18 16 43 43 H 1.08001 * 119.92651 * 359.97438 * 23 22 21 44 44 H 1.08005 * 120.07104 * 180.29813 * 24 23 22 45 45 H 1.08001 * 120.08307 * 179.97438 * 28 25 24 46 46 H 1.07996 * 119.92658 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1407 2.9693 1.1832 9 1 5.8363 2.4095 2.0551 10 6 7.2192 3.8420 1.2596 11 7 7.6146 4.4932 0.1889 12 14 8.1071 4.0896 2.8843 13 1 9.2138 3.1060 2.9986 14 1 8.6606 5.4664 2.9411 15 1 7.1527 3.8932 4.0050 16 6 6.1429 2.7413 -1.1603 17 8 7.3558 2.7385 -1.1539 18 6 5.3960 2.6583 -2.4665 19 1 4.5224 2.0178 -2.3454 20 6 4.9469 4.0591 -2.8872 21 6 6.3129 2.0722 -3.5419 22 6 5.5315 1.8748 -4.8153 23 6 5.4692 2.8932 -5.7499 24 6 4.7607 2.7170 -6.9204 25 6 4.1009 1.5097 -7.1583 26 6 3.3640 1.3195 -8.3713 27 7 2.7723 1.1752 -9.3337 28 6 4.1637 0.4881 -6.2085 29 6 4.8757 0.6778 -5.0423 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.9564 0.7805 -0.8891 34 1 3.9556 0.7810 0.8909 35 1 3.6099 3.2368 0.8893 36 1 3.6108 3.2356 -0.8906 37 1 8.4033 5.0565 0.2275 38 1 4.3303 4.4945 -2.1007 39 1 5.8224 4.6871 -3.0520 40 1 4.3681 3.9937 -3.8084 41 1 6.7036 1.1128 -3.2029 42 1 7.1408 2.7570 -3.7261 43 1 5.9800 3.8266 -5.5646 44 1 4.7169 3.5110 -7.6512 45 1 3.6553 -0.4481 -6.3859 46 1 4.9248 -0.1113 -4.3066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871347830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:25 Heat of formation + Delta-G solvation = -55.212863 kcal Electronic energy + Delta-G solvation = -30040.808247 eV Core-core repulsion = 25896.471552 eV Total energy + Delta-G solvation = -4144.336694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34472 -39.81696 -38.55159 -36.65386 -36.43292 -34.79631 -34.14567 -32.24369 -31.24379 -30.81281 -30.18175 -27.60138 -26.92258 -25.17886 -23.99206 -23.03584 -22.75224 -21.27488 -20.39849 -19.02702 -18.71319 -17.55017 -16.86092 -16.43291 -16.34987 -15.73195 -15.60511 -15.14765 -14.81721 -14.58680 -14.43609 -14.08473 -13.82177 -13.72356 -13.64658 -13.44443 -13.14508 -12.98213 -12.89079 -12.72252 -12.46413 -12.18755 -12.10374 -11.92459 -11.58141 -11.50992 -11.25311 -11.09360 -11.01680 -10.91383 -10.80122 -10.76462 -10.57790 -10.39567 -10.35322 -10.24936 -10.07746 -9.12987 -8.88065 -8.73116 -7.89072 -7.12548 -5.90970 -3.90365 0.66877 1.23859 2.36951 2.49474 2.81089 2.82938 3.30215 3.35201 3.36376 3.74220 3.76540 4.23957 4.43250 4.72153 4.74090 4.74644 4.91031 5.05840 5.12269 5.16335 5.26682 5.28568 5.29694 5.36609 5.44442 5.46293 5.53257 5.60810 5.71299 5.77498 5.87063 5.88217 6.11219 6.14512 6.16889 6.20101 6.25405 6.34454 6.41297 6.45667 6.58242 6.63436 6.67551 6.78115 6.84364 7.32685 7.59618 7.88496 8.24876 9.08614 9.18598 9.66916 10.38712 11.00845 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.003682 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.163277 B = 7602.440778 C =10282.352075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.132 4.132 6 C 0.120 3.880 7 N -0.462 5.462 8 C -0.337 4.337 9 H 0.078 0.922 10 C 0.047 3.953 11 N -0.810 5.810 12 Si 0.911 3.089 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.469 3.531 17 O -0.500 6.500 18 C -0.101 4.101 19 H 0.071 0.929 20 C -0.138 4.138 21 C -0.068 4.068 22 C -0.032 4.032 23 C -0.116 4.116 24 C -0.068 4.068 25 C -0.049 4.049 26 C 0.261 3.739 27 N -0.432 5.432 28 C -0.067 4.067 29 C -0.122 4.122 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.259 0.741 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -6.946 -6.911 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.396 6.396 5 C -0.172 4.172 6 C -0.006 4.006 7 N -0.184 5.184 8 C -0.464 4.464 9 H 0.096 0.904 10 C -0.164 4.164 11 N -0.446 5.446 12 Si 0.739 3.261 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.255 3.745 17 O -0.373 6.373 18 C -0.123 4.123 19 H 0.089 0.911 20 C -0.195 4.195 21 C -0.105 4.105 22 C -0.033 4.033 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.052 4.052 26 C -0.054 4.054 27 N -0.108 5.108 28 C -0.088 4.088 29 C -0.140 4.140 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.929 -6.682 -8.472 14.006 hybrid contribution 0.287 0.255 1.173 1.235 sum -8.642 -6.428 -7.299 13.011 Atomic orbital electron populations 1.23202 0.77035 1.03273 1.02413 1.86545 1.22972 1.34183 1.84392 1.24098 0.92399 0.81008 0.71759 1.90655 1.67347 1.36273 1.45301 1.22127 0.85851 1.03185 1.06002 1.21295 0.85135 0.91118 1.03049 1.43274 1.01662 1.67251 1.06256 1.19044 1.15180 1.23705 0.88519 0.90400 1.25316 0.98672 0.95449 0.96929 1.70103 1.22493 1.25188 1.26787 0.86202 0.79680 0.77434 0.82811 1.20749 1.21264 1.19878 1.19679 0.87917 0.83159 0.83712 1.90541 1.13513 1.47490 1.85778 1.21269 0.98184 0.97752 0.95062 0.91122 1.21763 1.01454 0.95838 1.00468 1.20546 0.97177 1.02890 0.89898 1.20439 0.94317 0.92814 0.95731 1.21123 0.99674 0.99607 0.93041 1.21147 0.95052 0.95280 0.97367 1.15953 1.02273 0.96957 0.90064 1.25941 0.93105 0.93403 0.92926 1.81360 1.10090 1.08042 1.11267 1.21126 0.97403 0.97586 0.92686 1.21070 0.97825 0.97915 0.97142 0.88478 0.92069 0.92060 0.88022 0.87284 0.90389 0.91474 0.93083 0.92343 0.91964 0.93089 0.90377 0.89505 0.84669 0.85267 0.85290 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.62 10.57 -39.25 -0.41 -5.04 16 3 C 0.46 6.76 7.96 36.00 0.29 7.05 16 4 O -0.51 -8.59 15.73 -18.75 -0.29 -8.88 16 5 C -0.13 -1.96 5.91 -27.88 -0.16 -2.13 16 6 C 0.12 2.18 4.30 -4.04 -0.02 2.17 16 7 N -0.46 -10.44 2.59 -114.81 -0.30 -10.74 16 8 C -0.34 -8.60 9.27 -14.94 -0.14 -8.74 16 9 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 10 C 0.05 1.24 5.00 -17.47 -0.09 1.15 16 11 N -0.81 -22.75 10.19 55.50 0.57 -22.18 16 12 Si 0.91 20.72 29.56 -169.99 -5.02 15.69 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.47 10.53 5.98 -10.98 -0.07 10.47 16 17 O -0.50 -13.40 13.05 5.55 0.07 -13.32 16 18 C -0.10 -1.67 1.87 -91.77 -0.17 -1.84 16 19 H 0.07 1.05 5.70 -51.93 -0.30 0.76 16 20 C -0.14 -2.19 8.40 37.16 0.31 -1.88 16 21 C -0.07 -0.98 4.22 -27.88 -0.12 -1.10 16 22 C -0.03 -0.37 4.72 -104.53 -0.49 -0.86 16 23 C -0.12 -1.21 8.00 -39.64 -0.32 -1.53 16 24 C -0.07 -0.64 9.76 -39.17 -0.38 -1.02 16 25 C -0.05 -0.49 5.73 -106.93 -0.61 -1.10 16 26 C 0.26 2.97 15.34 -22.38 -0.34 2.63 16 27 N -0.43 -5.82 18.56 41.95 0.78 -5.05 16 28 C -0.07 -0.62 9.76 -39.17 -0.38 -1.00 16 29 C -0.12 -1.21 9.68 -39.64 -0.38 -1.59 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.10 1.37 6.88 -51.93 -0.36 1.01 16 34 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 36 H 0.07 1.18 5.13 -51.93 -0.27 0.91 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.00 6.63 -51.93 -0.34 0.66 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.67 6.43 -51.93 -0.33 0.33 16 41 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.09 1.39 7.99 -51.93 -0.42 0.98 16 43 H 0.14 1.32 8.03 -52.49 -0.42 0.90 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -32.74 391.85 -6.92 -39.66 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.19 Total: 1.90 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -2.01 Total: 2.05 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 1.05 Total: -37.96 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.64 Total: -27.24 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.74 -6.92 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871347830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.556 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds