Wall clock time and date at job start Wed Apr 1 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99875 * 2 1 4 4 O 1.20827 * 120.00026 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99689 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47260 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47533 * 179.97438 * 6 5 3 8 8 C 1.37091 * 120.00223 * 264.49520 * 7 6 5 9 9 H 1.07997 * 119.99947 * 41.92651 * 8 7 6 10 10 C 1.38949 * 120.00207 * 221.91980 * 8 7 6 11 11 N 1.31411 * 120.00034 * 357.98182 * 10 8 7 12 12 Si 1.86800 * 120.00007 * 177.98026 * 10 8 7 13 13 H 1.48500 * 109.47146 * 90.00403 * 12 10 8 14 14 H 1.48506 * 109.46932 * 210.00326 * 12 10 8 15 15 H 1.48501 * 109.47256 * 330.00145 * 12 10 8 16 16 C 1.34785 * 119.99647 * 84.49476 * 7 6 5 17 17 O 1.21290 * 119.99613 * 183.62906 * 16 7 6 18 18 C 1.50696 * 119.99873 * 3.63547 * 16 7 6 19 19 H 1.08999 * 109.47276 * 320.80750 * 18 16 7 20 20 C 1.53002 * 109.47371 * 80.80964 * 18 16 7 21 21 C 1.53001 * 109.46861 * 200.80765 * 18 16 7 22 22 C 1.50702 * 109.47236 * 174.99977 * 21 18 16 23 23 C 1.38364 * 119.84555 * 89.99915 * 22 21 18 24 24 C 1.37948 * 120.14667 * 179.70557 * 23 22 21 25 25 C 1.39626 * 119.85161 * 0.27499 * 24 23 22 26 26 C 1.43195 * 120.15502 * 180.02562 * 25 24 23 27 27 N 9.49955 * 97.98889 * 277.17627 * 2 1 3 28 28 C 1.39634 * 119.69852 * 359.97438 * 25 24 23 29 29 C 1.37948 * 119.84451 * 0.02562 * 28 25 24 30 30 H 1.08997 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47596 * 300.00551 * 1 2 3 32 32 H 1.09002 * 109.47240 * 60.00337 * 1 2 3 33 33 H 1.08998 * 109.47863 * 59.99794 * 5 3 2 34 34 H 1.09004 * 109.47083 * 299.99202 * 5 3 2 35 35 H 1.09003 * 109.47041 * 59.99259 * 6 5 3 36 36 H 1.09000 * 109.47330 * 300.00117 * 6 5 3 37 37 H 0.96999 * 120.00099 * 184.09204 * 11 10 8 38 38 H 1.09006 * 109.46859 * 302.53463 * 20 18 16 39 39 H 1.08997 * 109.47394 * 62.53655 * 20 18 16 40 40 H 1.08998 * 109.47114 * 182.53698 * 20 18 16 41 41 H 1.08995 * 109.47150 * 55.00071 * 21 18 16 42 42 H 1.09007 * 109.46999 * 295.00013 * 21 18 16 43 43 H 1.08001 * 119.92651 * 359.97438 * 23 22 21 44 44 H 1.08005 * 120.07104 * 180.29813 * 24 23 22 45 45 H 1.08001 * 120.08307 * 179.97438 * 28 25 24 46 46 H 1.07996 * 119.92658 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1407 2.9693 1.1832 9 1 5.8363 2.4095 2.0551 10 6 7.2192 3.8420 1.2596 11 7 7.6146 4.4932 0.1889 12 14 8.1071 4.0896 2.8843 13 1 9.2138 3.1060 2.9986 14 1 8.6606 5.4664 2.9411 15 1 7.1527 3.8932 4.0050 16 6 6.1429 2.7413 -1.1603 17 8 7.3558 2.7385 -1.1539 18 6 5.3960 2.6583 -2.4665 19 1 4.5224 2.0178 -2.3454 20 6 4.9469 4.0591 -2.8872 21 6 6.3129 2.0722 -3.5419 22 6 5.5315 1.8748 -4.8153 23 6 5.4692 2.8932 -5.7499 24 6 4.7607 2.7170 -6.9204 25 6 4.1009 1.5097 -7.1583 26 6 3.3640 1.3195 -8.3713 27 7 2.7723 1.1752 -9.3337 28 6 4.1637 0.4881 -6.2085 29 6 4.8757 0.6778 -5.0423 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.9564 0.7805 -0.8891 34 1 3.9556 0.7810 0.8909 35 1 3.6099 3.2368 0.8893 36 1 3.6108 3.2356 -0.8906 37 1 8.4033 5.0565 0.2275 38 1 4.3303 4.4945 -2.1007 39 1 5.8224 4.6871 -3.0520 40 1 4.3681 3.9937 -3.8084 41 1 6.7036 1.1128 -3.2029 42 1 7.1408 2.7570 -3.7261 43 1 5.9800 3.8266 -5.5646 44 1 4.7169 3.5110 -7.6512 45 1 3.6553 -0.4481 -6.3859 46 1 4.9248 -0.1113 -4.3066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871347830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:24 Heat of formation + Delta-G solvation = -72.246281 kcal Electronic energy + Delta-G solvation = -30041.546871 eV Core-core repulsion = 25896.471552 eV Total energy + Delta-G solvation = -4145.075319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49956 -40.81418 -40.00507 -37.65638 -37.53503 -36.29493 -35.61764 -33.97411 -32.07800 -31.87068 -31.67284 -28.54817 -28.03928 -26.96059 -25.33962 -24.23964 -23.55331 -22.55357 -21.58930 -20.33011 -19.82843 -18.82493 -18.32017 -17.59604 -17.51770 -17.06285 -16.78386 -16.49389 -16.02167 -15.97184 -15.41261 -15.30903 -15.07690 -14.98033 -14.77343 -14.34846 -14.28757 -14.26383 -13.91886 -13.80533 -13.66416 -13.51074 -13.21337 -13.05294 -12.98885 -12.87395 -12.74341 -12.69357 -12.43163 -12.17753 -12.08779 -11.97327 -11.93897 -11.76216 -11.67598 -11.61576 -11.49162 -10.79461 -9.88470 -9.74957 -9.57929 -8.99442 -7.88575 -5.90723 -0.16102 0.49552 1.22532 1.47034 1.48409 1.56678 1.61394 1.78016 1.95043 2.41427 2.72993 2.89606 2.94192 3.30388 3.32909 3.83826 3.90962 3.95986 4.05914 4.08113 4.15992 4.24524 4.33987 4.38275 4.40645 4.42379 4.51472 4.56248 4.60145 4.76629 4.79106 4.86401 4.89377 4.94846 5.00198 5.07672 5.15215 5.19307 5.35190 5.40532 5.40928 5.43419 5.47326 5.58939 5.77221 5.94993 6.28630 6.46140 6.78193 7.16820 7.34594 7.83543 8.60552 9.01686 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.003682 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.163277 B = 7602.440778 C =10282.352075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.475 3.525 4 O -0.535 6.535 5 C -0.123 4.123 6 C 0.123 3.877 7 N -0.476 5.476 8 C -0.348 4.348 9 H 0.083 0.917 10 C -0.007 4.007 11 N -0.845 5.845 12 Si 0.971 3.029 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.258 1.258 16 C 0.462 3.538 17 O -0.551 6.551 18 C -0.090 4.090 19 H 0.094 0.906 20 C -0.129 4.129 21 C -0.057 4.057 22 C -0.041 4.041 23 C -0.122 4.122 24 C -0.061 4.061 25 C -0.051 4.051 26 C 0.283 3.717 27 N -0.471 5.471 28 C -0.058 4.058 29 C -0.119 4.119 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.137 0.863 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 -8.612 -7.528 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.162 4.162 6 C -0.002 4.002 7 N -0.199 5.199 8 C -0.476 4.476 9 H 0.101 0.899 10 C -0.213 4.213 11 N -0.482 5.482 12 Si 0.797 3.203 13 H -0.213 1.213 14 H -0.216 1.216 15 H -0.182 1.182 16 C 0.250 3.750 17 O -0.428 6.428 18 C -0.112 4.112 19 H 0.112 0.888 20 C -0.187 4.187 21 C -0.095 4.095 22 C -0.042 4.042 23 C -0.139 4.139 24 C -0.081 4.081 25 C -0.055 4.055 26 C -0.031 4.031 27 N -0.147 5.147 28 C -0.078 4.078 29 C -0.137 4.137 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.165 0.835 45 H 0.170 0.830 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.888 -8.375 -9.074 16.463 hybrid contribution 0.788 0.690 1.359 1.716 sum -10.100 -7.685 -7.715 14.852 Atomic orbital electron populations 1.23546 0.74907 1.05627 1.02526 1.86517 1.24948 1.32706 1.83767 1.23797 0.92005 0.81207 0.71116 1.90655 1.67834 1.37261 1.46726 1.21877 0.86658 1.00554 1.07125 1.21270 0.82467 0.93660 1.02768 1.43514 1.03430 1.67154 1.05799 1.19379 1.15293 1.23180 0.89793 0.89906 1.26118 0.99884 0.95588 0.99694 1.70270 1.22814 1.26480 1.28626 0.85271 0.78526 0.76718 0.79787 1.21269 1.21614 1.18221 1.20616 0.87765 0.81242 0.85355 1.90509 1.15936 1.49490 1.86866 1.21179 0.98594 0.98881 0.92508 0.88758 1.21689 1.00711 0.94790 1.01470 1.20332 0.96510 1.01739 0.90884 1.20184 0.95146 0.94179 0.94695 1.21162 0.99948 0.99579 0.93260 1.21285 0.94067 0.95614 0.97150 1.16043 1.02269 0.97481 0.89672 1.26042 0.92232 0.92234 0.92587 1.81393 1.11498 1.09357 1.12487 1.21332 0.96598 0.98150 0.91756 1.21201 0.97244 0.97528 0.97755 0.85050 0.92196 0.91798 0.86176 0.86977 0.91786 0.90707 0.94037 0.93826 0.93968 0.89665 0.90898 0.91818 0.84484 0.83470 0.83015 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.20 10.57 -51.40 -0.54 -8.74 16 3 C 0.47 12.85 7.96 71.23 0.57 13.42 16 4 O -0.54 -17.27 15.73 21.96 0.35 -16.93 16 5 C -0.12 -3.45 5.91 29.85 0.18 -3.27 16 6 C 0.12 4.44 4.30 86.38 0.37 4.81 16 7 N -0.48 -21.81 2.59 -635.54 -1.64 -23.46 16 8 C -0.35 -18.07 9.27 84.04 0.78 -17.29 16 9 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 10 C -0.01 -0.37 5.00 84.93 0.42 0.06 16 11 N -0.85 -49.34 10.19 21.66 0.22 -49.12 16 12 Si 0.97 43.53 29.56 68.60 2.03 45.55 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 14 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 C 0.46 21.13 5.98 87.65 0.52 21.66 16 17 O -0.55 -30.68 13.05 -3.06 -0.04 -30.72 16 18 C -0.09 -2.94 1.87 -11.54 -0.02 -2.96 16 19 H 0.09 2.61 5.70 -2.39 -0.01 2.60 16 20 C -0.13 -4.05 8.40 71.98 0.60 -3.45 16 21 C -0.06 -1.63 4.22 29.85 0.13 -1.50 16 22 C -0.04 -0.86 4.72 -19.80 -0.09 -0.95 16 23 C -0.12 -2.28 8.00 22.23 0.18 -2.10 16 24 C -0.06 -0.98 9.76 22.54 0.22 -0.76 16 25 C -0.05 -0.86 5.73 -21.36 -0.12 -0.98 16 26 C 0.28 5.75 15.34 88.30 1.35 7.10 16 27 N -0.47 -11.90 18.56 19.04 0.35 -11.55 16 28 C -0.06 -0.86 9.76 22.54 0.22 -0.64 16 29 C -0.12 -2.00 9.68 22.23 0.22 -1.78 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 32 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.12 2.92 6.88 -2.39 -0.02 2.90 16 34 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 35 H 0.06 2.47 7.95 -2.39 -0.02 2.45 16 36 H 0.07 2.58 5.13 -2.39 -0.01 2.56 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.04 1.48 6.63 -2.38 -0.02 1.47 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 2.07 6.43 -2.39 -0.02 2.06 16 41 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 42 H 0.06 2.11 7.99 -2.38 -0.02 2.09 16 43 H 0.14 2.50 8.03 -2.91 -0.02 2.48 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -73.63 391.85 8.45 -65.19 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.01 Total: 16.78 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 6.72 Total: 12.99 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.07 Total: -84.12 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.24 Total: -56.39 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -73.63 8.45 -65.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871347830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.058 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds