Wall clock time and date at job start Wed Apr 1 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46964 * 2 1 4 4 C 1.50699 * 109.47142 * 239.99790 * 2 1 3 5 5 H 1.07998 * 120.00229 * 245.42684 * 4 2 1 6 6 C 1.37874 * 120.00081 * 65.43483 * 4 2 1 7 7 N 1.31507 * 120.00201 * 184.91841 * 6 4 2 8 8 Si 1.86801 * 119.99948 * 5.18881 * 6 4 2 9 9 H 1.48497 * 109.47329 * 269.72994 * 8 6 4 10 10 H 1.48499 * 109.46872 * 29.73053 * 8 6 4 11 11 H 1.48497 * 109.47174 * 149.72739 * 8 6 4 12 12 N 1.46501 * 109.47363 * 119.99811 * 2 1 3 13 13 C 1.34778 * 119.99780 * 274.99999 * 12 2 1 14 14 O 1.21361 * 120.00268 * 0.02562 * 13 12 2 15 15 C 1.49341 * 119.99609 * 179.97438 * 13 12 2 16 16 O 1.21387 * 120.00358 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99609 * 179.97438 * 15 13 12 18 18 C 1.39903 * 119.99807 * 185.63230 * 17 15 13 19 19 C 1.38985 * 120.16359 * 34.04548 * 18 17 15 20 20 C 1.38293 * 120.44809 * 179.97438 * 19 18 17 21 21 C 1.38203 * 120.38624 * 0.04716 * 20 19 18 22 22 C 1.39099 * 119.69003 * 359.97438 * 21 20 19 23 23 C 1.38872 * 120.16301 * 213.76847 * 18 17 15 24 24 O 1.35809 * 121.41269 * 0.59655 * 23 18 17 25 25 C 1.42825 * 117.22544 * 146.06161 * 24 23 18 26 26 C 1.53002 * 109.25757 * 287.46493 * 25 24 23 27 27 C 1.53005 * 109.22589 * 168.01136 * 25 24 23 28 28 C 1.50586 * 110.57791 * 47.74891 * 25 24 23 29 29 C 1.33123 * 120.03341 * 328.75656 * 28 25 24 30 30 H 1.08999 * 109.46894 * 174.97433 * 1 2 3 31 31 H 1.08998 * 109.46998 * 294.97230 * 1 2 3 32 32 H 1.08997 * 109.47423 * 54.97437 * 1 2 3 33 33 H 0.97002 * 120.00120 * 355.26669 * 7 6 4 34 34 H 0.96992 * 120.00239 * 94.99765 * 12 2 1 35 35 H 0.96995 * 120.00152 * 5.63785 * 17 15 13 36 36 H 1.08000 * 119.77854 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.80829 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.15558 * 179.97438 * 21 20 19 39 39 H 1.08996 * 109.47030 * 181.09167 * 26 25 24 40 40 H 1.09006 * 109.46823 * 301.09042 * 26 25 24 41 41 H 1.08998 * 109.47159 * 61.08599 * 26 25 24 42 42 H 1.09005 * 109.47040 * 298.93081 * 27 25 24 43 43 H 1.09005 * 109.46917 * 58.92843 * 27 25 24 44 44 H 1.08996 * 109.47022 * 178.93272 * 27 25 24 45 45 H 1.07999 * 119.98493 * 148.77660 * 28 25 24 46 46 H 1.08001 * 120.96484 * 180.59553 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5790 -1.6368 -1.1338 6 6 1.7941 -0.1777 -2.4796 7 7 2.1467 -0.8444 -3.5569 8 14 0.9774 1.4944 -2.6416 9 1 -0.4956 1.3209 -2.7142 10 1 1.3200 2.3290 -1.4621 11 1 1.4586 2.1627 -3.8773 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0181 2.3571 14 8 1.8580 1.1593 2.4117 15 6 2.6444 -0.7222 3.5766 16 8 2.9332 -1.9000 3.5222 17 7 2.7736 -0.0497 4.7374 18 6 3.3493 -0.6758 5.8482 19 6 4.3702 -1.6031 5.6761 20 6 4.9438 -2.2251 6.7700 21 6 4.5080 -1.9327 8.0485 22 6 3.4866 -1.0067 8.2333 23 6 2.9075 -0.3695 7.1286 24 8 1.9082 0.5262 7.3373 25 6 1.0310 0.2821 8.4376 26 6 0.1148 -0.8961 8.1007 27 6 0.1791 1.5279 8.6889 28 6 1.8179 -0.0404 9.6804 29 6 2.9906 -0.6630 9.5837 30 1 -0.3633 -1.0237 -0.0900 31 1 -0.3633 0.4339 0.9316 32 1 -0.3634 0.5898 -0.8415 33 1 2.6355 -1.6781 -3.4731 34 1 2.2490 -1.6316 1.1527 35 1 2.4675 0.8684 4.8027 36 1 4.7179 -1.8396 4.6813 37 1 5.7366 -2.9438 6.6243 38 1 4.9583 -2.4210 8.9001 39 1 -0.5694 -1.0731 8.9306 40 1 -0.4567 -0.6663 7.2014 41 1 0.7176 -1.7880 7.9301 42 1 0.8279 2.3675 8.9385 43 1 -0.3922 1.7645 7.7912 44 1 -0.5053 1.3393 9.5160 45 1 1.4306 0.2333 10.6506 46 1 3.5629 -0.9100 10.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873821861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:59 Heat of formation + Delta-G solvation = -84.223498 kcal Electronic energy + Delta-G solvation = -29917.798040 eV Core-core repulsion = 25772.203350 eV Total energy + Delta-G solvation = -4145.594690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44966 -41.61330 -40.05385 -38.69182 -37.23741 -36.40673 -35.11651 -34.49074 -33.59279 -31.81402 -30.62301 -29.69221 -28.31916 -27.03940 -26.36254 -24.69436 -23.50234 -23.41373 -22.19400 -21.43471 -20.57697 -19.80309 -19.44647 -18.78856 -17.96073 -17.62379 -17.19443 -16.87184 -16.64659 -16.43912 -15.87190 -15.70477 -15.60143 -15.09560 -15.02083 -14.91088 -14.71674 -14.39689 -14.31834 -13.90175 -13.89358 -13.63133 -13.47058 -13.43291 -13.17817 -12.99510 -12.89266 -12.71497 -12.51243 -12.48075 -12.07299 -12.00281 -11.83287 -11.68708 -11.39404 -11.01605 -10.98139 -10.76822 -10.70664 -10.21290 -9.18569 -8.98237 -8.84151 -6.53488 -0.27853 -0.07962 0.47338 1.16133 1.33605 1.42514 1.52763 1.69243 2.01381 2.16967 2.40020 2.56639 2.76082 3.00396 3.31926 3.53182 3.63143 3.75075 3.89419 3.93589 4.06578 4.23758 4.28573 4.38941 4.43190 4.56638 4.57008 4.63583 4.63794 4.71034 4.82107 4.84596 4.91943 4.95664 5.06236 5.11608 5.15259 5.23638 5.25113 5.32156 5.35335 5.45852 5.48792 5.59691 5.80815 5.82861 5.93765 6.27541 6.37612 6.42510 6.62761 6.88895 7.25711 8.56375 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.002579 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.529683 B =10852.216467 C =11897.534231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.236 3.764 3 H 0.041 0.959 4 C -0.611 4.611 5 H 0.038 0.962 6 C -0.009 4.009 7 N -0.931 5.931 8 Si 1.083 2.917 9 H -0.254 1.254 10 H -0.259 1.259 11 H -0.286 1.286 12 N -0.667 5.667 13 C 0.500 3.500 14 O -0.549 6.549 15 C 0.516 3.484 16 O -0.520 6.520 17 N -0.629 5.629 18 C 0.097 3.903 19 C -0.106 4.106 20 C -0.126 4.126 21 C -0.077 4.077 22 C -0.125 4.125 23 C 0.099 3.901 24 O -0.324 6.324 25 C 0.133 3.867 26 C -0.169 4.169 27 C -0.134 4.134 28 C -0.178 4.178 29 C -0.104 4.104 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.257 0.743 34 H 0.410 0.590 35 H 0.427 0.573 36 H 0.126 0.874 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.164 0.836 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 0.987 33.066 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.132 3.868 3 H 0.059 0.941 4 C -0.649 4.649 5 H 0.057 0.943 6 C -0.209 4.209 7 N -0.566 5.566 8 Si 0.905 3.095 9 H -0.179 1.179 10 H -0.184 1.184 11 H -0.213 1.213 12 N -0.317 5.317 13 C 0.280 3.720 14 O -0.428 6.428 15 C 0.298 3.702 16 O -0.396 6.396 17 N -0.275 5.275 18 C 0.004 3.996 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.095 4.095 22 C -0.126 4.126 23 C 0.052 3.948 24 O -0.240 6.240 25 C 0.096 3.904 26 C -0.227 4.227 27 C -0.191 4.191 28 C -0.195 4.195 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.266 0.734 36 H 0.143 0.857 37 H 0.174 0.826 38 H 0.185 0.815 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.181 0.819 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.059 2.242 31.763 31.859 hybrid contribution 0.888 -1.644 0.319 1.895 sum -0.171 0.599 32.081 32.087 Atomic orbital electron populations 1.22312 0.96676 1.01797 1.00539 1.19190 0.92143 0.93787 0.81646 0.94098 1.22302 1.40204 1.09930 0.92458 0.94345 1.27007 0.96372 1.06182 0.91335 1.70929 1.37664 1.16913 1.31143 0.83532 0.77334 0.71912 0.76696 1.17925 1.18409 1.21272 1.46056 1.62106 1.14808 1.08695 1.20023 0.80102 0.86996 0.84859 1.90711 1.51044 1.15904 1.85186 1.20191 0.78839 0.86560 0.84587 1.90744 1.48580 1.15401 1.84841 1.42907 1.58679 1.17566 1.08385 1.17352 0.98305 1.00149 0.83838 1.21214 0.93905 0.96450 1.01067 1.21278 1.01106 1.00699 0.91315 1.21433 0.94370 0.95523 0.98171 1.19347 0.99533 1.00582 0.93165 1.18742 0.91071 0.93482 0.91520 1.85998 1.40199 1.46549 1.51243 1.21045 0.88174 0.97866 0.83280 1.22393 0.99977 0.97004 1.03281 1.21860 0.99020 0.94686 1.03534 1.24142 0.96612 0.99221 0.99563 1.22052 0.96974 0.98559 0.94544 0.92457 0.93017 0.92372 0.93365 0.75479 0.73390 0.85652 0.82575 0.81518 0.88223 0.92516 0.93887 0.91284 0.92001 0.87420 0.81897 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.63 9.07 71.98 0.65 -5.98 16 2 C 0.24 11.28 2.14 44.24 0.09 11.38 16 3 H 0.04 2.08 6.07 -2.39 -0.01 2.07 16 4 C -0.61 -33.76 9.09 25.60 0.23 -33.53 16 5 H 0.04 2.28 7.95 -2.91 -0.02 2.26 16 6 C -0.01 -0.52 5.43 84.66 0.46 -0.06 16 7 N -0.93 -56.85 13.70 21.45 0.29 -56.56 16 8 Si 1.08 49.65 25.29 68.60 1.73 51.38 16 9 H -0.25 -10.57 6.82 99.48 0.68 -9.90 16 10 H -0.26 -11.22 6.35 99.48 0.63 -10.59 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 N -0.67 -28.52 5.06 -447.54 -2.27 -30.78 16 13 C 0.50 19.92 7.85 87.23 0.68 20.61 16 14 O -0.55 -23.45 16.15 -3.28 -0.05 -23.50 16 15 C 0.52 18.19 7.61 87.23 0.66 18.85 16 16 O -0.52 -19.49 14.23 -3.36 -0.05 -19.54 16 17 N -0.63 -19.27 5.20 -304.70 -1.59 -20.86 16 18 C 0.10 2.74 6.27 38.18 0.24 2.98 16 19 C -0.11 -2.80 8.65 22.46 0.19 -2.61 16 20 C -0.13 -2.40 10.03 22.27 0.22 -2.18 16 21 C -0.08 -1.23 9.85 22.47 0.22 -1.01 16 22 C -0.12 -2.41 5.76 -20.07 -0.12 -2.53 16 23 C 0.10 2.45 5.87 22.86 0.13 2.59 16 24 O -0.32 -7.79 9.40 -91.40 -0.86 -8.65 16 25 C 0.13 2.23 1.08 -11.57 -0.01 2.22 16 26 C -0.17 -2.87 8.52 71.98 0.61 -2.25 16 27 C -0.13 -1.63 8.79 71.98 0.63 -1.00 16 28 C -0.18 -2.19 8.74 24.50 0.21 -1.97 16 29 C -0.10 -1.37 10.08 23.68 0.24 -1.14 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.43 4.42 -2.39 -0.01 2.42 16 33 H 0.26 15.83 8.72 -92.71 -0.81 15.02 16 34 H 0.41 16.93 7.99 -92.71 -0.74 16.19 16 35 H 0.43 12.51 8.09 -92.71 -0.75 11.76 16 36 H 0.13 3.67 6.47 -2.91 -0.02 3.66 16 37 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.04 0.88 7.78 -2.39 -0.02 0.86 16 42 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 46 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -70.41 380.86 1.99 -68.42 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -0.60 Total: 35.70 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 5.37 Total: 4.38 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -3.56 Total: -108.20 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.96 Total: -51.69 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.73 Total: 51.38 kcal Total: -70.41 1.99 -68.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873821861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.804 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds