Wall clock time and date at job start Wed Apr 1 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35960 * 117.00313 * 2 1 4 4 C 1.38266 * 120.11957 * 0.02562 * 3 2 1 5 5 C 1.38764 * 120.67699 * 180.02562 * 4 3 2 6 6 C 1.36636 * 120.49561 * 359.97438 * 5 4 3 7 7 C 1.39768 * 119.81254 * 0.02562 * 6 5 4 8 8 C 1.46258 * 134.15082 * 180.26582 * 7 6 5 9 9 C 1.35814 * 106.08845 * 180.16588 * 8 7 6 10 10 C 1.46995 * 125.14238 * 179.86022 * 9 8 7 11 11 O 1.21654 * 119.99462 * 359.72565 * 10 9 8 12 12 N 1.34773 * 120.00145 * 179.72353 * 10 9 8 13 13 C 1.47418 * 125.64758 * 179.97438 * 12 10 9 14 14 C 1.54915 * 104.83107 * 204.17202 * 13 12 10 15 15 H 1.09002 * 111.00539 * 81.06145 * 14 13 12 16 16 C 1.53001 * 111.03575 * 204.90180 * 14 13 12 17 17 C 1.55154 * 101.58176 * 322.98725 * 14 13 12 18 18 H 1.08997 * 110.72125 * 276.96414 * 17 14 13 19 19 N 1.46497 * 110.72310 * 153.86360 * 17 14 13 20 20 C 1.36936 * 120.00157 * 155.00099 * 19 17 14 21 21 H 1.07999 * 120.00237 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00050 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99959 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47272 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47249 * 120.00247 * 24 22 20 27 27 H 1.48507 * 109.47259 * 240.00244 * 24 22 20 28 28 C 1.47029 * 125.64745 * 0.02562 * 12 10 9 29 29 O 1.34928 * 109.71723 * 359.60281 * 9 8 7 30 30 C 1.34774 * 110.84392 * 0.26028 * 29 9 8 31 31 H 1.09000 * 109.46961 * 299.99862 * 1 2 3 32 32 H 1.09001 * 109.46995 * 59.99896 * 1 2 3 33 33 H 1.09001 * 109.47090 * 179.97438 * 1 2 3 34 34 H 1.07997 * 119.65627 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.75014 * 179.97438 * 5 4 3 36 36 H 1.08003 * 120.08807 * 180.02562 * 6 5 4 37 37 H 1.07999 * 126.95687 * 0.06585 * 8 7 6 38 38 H 1.08995 * 110.37279 * 85.33616 * 13 12 10 39 39 H 1.08997 * 110.36990 * 323.00814 * 13 12 10 40 40 H 1.09000 * 109.47012 * 175.39412 * 16 14 13 41 41 H 1.08999 * 109.46864 * 295.38705 * 16 14 13 42 42 H 1.08992 * 109.47148 * 55.39463 * 16 14 13 43 43 H 0.96996 * 119.99952 * 335.00231 * 19 17 14 44 44 H 0.97004 * 120.00137 * 179.97438 * 23 22 20 45 45 H 1.08993 * 109.88066 * 59.47708 * 28 12 10 46 46 H 1.08996 * 110.00664 * 298.38696 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2957 2.3726 0.0005 5 6 1.9137 3.6150 0.0000 6 6 3.2767 3.7115 -0.0005 7 6 4.0554 2.5509 -0.0011 8 6 5.4945 2.2897 0.0032 9 6 5.6318 0.9385 -0.0039 10 6 6.9132 0.2182 -0.0058 11 8 7.9596 0.8387 -0.0059 12 7 6.9287 -1.1294 -0.0075 13 6 8.1364 -1.9747 -0.0100 14 6 7.6771 -3.3207 -0.6242 15 1 7.6497 -3.2644 -1.7124 16 6 8.5733 -4.4705 -0.1598 17 6 6.2471 -3.4586 -0.0383 18 1 6.2810 -3.8786 0.9669 19 7 5.4055 -4.2791 -0.9127 20 6 4.3284 -4.9480 -0.3955 21 1 4.0990 -4.8704 0.6569 22 6 3.5313 -5.7259 -1.2240 23 7 3.8110 -5.8209 -2.5066 24 14 2.0624 -6.6389 -0.5184 25 1 1.9654 -6.3696 0.9387 26 1 0.8219 -6.1755 -1.1906 27 1 2.2316 -8.0972 -0.7425 28 6 5.7438 -2.0000 -0.0080 29 8 4.4141 0.3572 -0.0032 30 6 3.4387 1.2873 -0.0015 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2175 2.3119 0.0005 35 1 1.3128 4.5124 0.0000 36 1 3.7508 4.6819 -0.0005 37 1 6.2875 3.0228 0.0089 38 1 8.4962 -2.1254 1.0078 39 1 8.9145 -1.5229 -0.6253 40 1 8.1803 -5.4136 -0.5395 41 1 9.5840 -4.3193 -0.5387 42 1 8.5939 -4.4979 0.9296 43 1 5.6113 -4.3486 -1.8581 44 1 3.2542 -6.3648 -3.0855 45 1 5.1366 -1.7989 -0.8905 46 1 5.1554 -1.8295 0.8934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939040100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:42 Heat of formation + Delta-G solvation = -39.158027 kcal Electronic energy + Delta-G solvation = -30352.554129 eV Core-core repulsion = 26208.913624 eV Total energy + Delta-G solvation = -4143.640505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.65726 -41.21254 -40.45330 -39.08532 -37.98560 -35.94826 -34.06754 -33.55226 -32.56223 -31.43901 -30.46683 -29.25681 -28.43190 -27.60597 -25.97568 -24.70700 -23.89881 -22.91497 -22.41733 -21.45073 -20.96105 -19.18598 -19.14767 -18.94563 -18.20205 -17.83112 -17.32653 -17.16772 -16.59056 -16.53217 -16.16525 -16.02157 -15.65336 -15.40973 -15.01247 -14.68873 -14.62780 -14.44081 -14.23239 -14.02154 -13.82148 -13.48310 -13.33660 -13.27207 -13.03922 -12.90311 -12.89484 -12.49529 -12.31382 -12.26825 -12.22156 -12.14587 -12.06601 -11.73292 -11.64408 -11.41875 -10.97992 -10.96569 -9.95354 -9.70218 -9.09664 -8.93864 -7.96239 -5.26369 -0.57607 0.25796 0.68537 1.29880 1.46933 1.47134 1.57304 1.82016 1.89606 2.21130 2.54703 2.60607 3.03877 3.34594 3.54398 3.62916 3.76549 3.79697 3.83095 3.90055 4.00417 4.18684 4.22092 4.24998 4.27308 4.33473 4.35560 4.40644 4.53099 4.59727 4.62361 4.69865 4.83361 4.86151 4.94827 4.98705 5.05093 5.11279 5.12715 5.23512 5.30910 5.38277 5.46397 5.52185 5.56855 5.74183 6.15948 6.24690 6.34831 6.72608 7.31789 8.01523 8.26520 9.26928 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008167 B = 0.004404 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.467163 B = 6355.640408 C = 9506.658498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.346 6.346 3 C 0.114 3.886 4 C -0.172 4.172 5 C -0.088 4.088 6 C -0.098 4.098 7 C -0.117 4.117 8 C -0.108 4.108 9 C -0.044 4.044 10 C 0.607 3.393 11 O -0.545 6.545 12 N -0.601 5.601 13 C 0.116 3.884 14 C -0.104 4.104 15 H 0.072 0.928 16 C -0.125 4.125 17 C 0.173 3.827 18 H 0.075 0.925 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.077 0.923 22 C -0.067 4.067 23 N -0.967 5.967 24 Si 0.968 3.032 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.292 1.292 28 C 0.095 3.905 29 O -0.191 6.191 30 C 0.003 3.997 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.047 0.953 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 19.261 6.948 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.069 3.931 4 C -0.191 4.191 5 C -0.106 4.106 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.128 4.128 9 C -0.094 4.094 10 C 0.395 3.605 11 O -0.426 6.426 12 N -0.332 5.332 13 C -0.005 4.005 14 C -0.124 4.124 15 H 0.090 0.910 16 C -0.183 4.183 17 C 0.062 3.938 18 H 0.093 0.907 19 N -0.357 5.357 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.260 4.260 23 N -0.617 5.617 24 Si 0.797 3.203 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.219 1.219 28 C -0.031 4.031 29 O -0.093 6.093 30 C -0.045 4.045 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.189 0.811 35 H 0.195 0.805 36 H 0.183 0.817 37 H 0.211 0.789 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.693 19.031 7.085 20.378 hybrid contribution -1.145 -0.864 -0.432 1.498 sum -2.838 18.167 6.653 19.554 Atomic orbital electron populations 1.23403 0.75688 1.05384 1.03133 1.86215 1.24255 1.26818 1.88784 1.18253 0.86567 0.86886 1.01425 1.21487 1.01444 0.90244 1.05891 1.21071 0.94107 0.97930 0.97480 1.20700 0.93609 0.96854 1.00465 1.19990 0.92397 0.93394 1.06027 1.22993 0.95528 0.93646 1.00657 1.22037 0.83874 0.93332 1.10144 1.16457 0.85771 0.80891 0.77342 1.90815 1.31110 1.67176 1.53545 1.48458 1.10474 1.04294 1.69937 1.22505 0.86590 0.88909 1.02513 1.22589 0.94997 0.94669 1.00184 0.90959 1.21551 0.98807 0.96146 1.01780 1.21453 0.89764 0.87383 0.95164 0.90662 1.42453 1.31031 1.54403 1.07854 1.19634 1.03344 1.20512 0.93857 0.90550 1.25495 1.02362 1.02247 0.95890 1.69820 1.41924 1.45323 1.04604 0.85156 0.79261 0.77843 0.78015 1.19046 1.22202 1.21869 1.23003 0.86786 0.92681 1.00664 1.84242 1.13261 1.35581 1.76216 1.19590 0.88532 0.88067 1.08270 0.90110 0.90650 0.87867 0.81060 0.80485 0.81721 0.78904 0.88892 0.89399 0.93364 0.90423 0.91330 0.79215 0.93998 0.93424 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.35 -11.02 10.50 -93.09 -0.98 -12.00 16 3 C 0.11 3.30 6.70 22.57 0.15 3.45 16 4 C -0.17 -3.21 9.03 22.40 0.20 -3.01 16 5 C -0.09 -1.28 9.97 22.02 0.22 -1.07 16 6 C -0.10 -1.76 10.05 22.27 0.22 -1.54 16 7 C -0.12 -3.13 6.38 -20.25 -0.13 -3.26 16 8 C -0.11 -3.03 10.81 23.79 0.26 -2.78 16 9 C -0.04 -1.53 6.90 24.00 0.17 -1.36 16 10 C 0.61 21.86 7.83 86.54 0.68 22.54 16 11 O -0.55 -20.45 17.08 -4.20 -0.07 -20.52 16 12 N -0.60 -21.12 3.33 -816.15 -2.71 -23.83 16 13 C 0.12 3.39 6.38 86.86 0.55 3.95 16 14 C -0.10 -3.32 3.27 -9.40 -0.03 -3.35 16 15 H 0.07 2.49 8.01 -2.39 -0.02 2.48 16 16 C -0.13 -3.34 9.29 71.98 0.67 -2.67 16 17 C 0.17 6.80 3.09 46.18 0.14 6.95 16 18 H 0.08 2.89 7.99 -2.39 -0.02 2.87 16 19 N -0.72 -35.73 5.15 -317.34 -1.63 -37.36 16 20 C -0.24 -13.23 9.96 84.03 0.84 -12.39 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 23 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 24 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 C 0.09 3.75 5.28 86.73 0.46 4.20 16 29 O -0.19 -7.32 8.10 -13.39 -0.11 -7.43 16 30 C 0.00 0.11 7.35 23.14 0.17 0.28 16 31 H 0.08 1.12 7.66 -2.39 -0.02 1.10 16 32 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.17 1.99 6.26 -2.91 -0.02 1.98 16 35 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 36 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.19 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.09 2.35 8.03 -2.39 -0.02 2.33 16 39 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 43 H 0.38 20.19 7.76 -92.71 -0.72 19.47 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.05 2.19 7.53 -2.39 -0.02 2.17 16 46 H 0.06 2.29 7.76 -2.39 -0.02 2.27 16 Total: -1.00 -74.34 385.24 3.24 -71.10 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.29 Total: 32.60 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.15 Total: 8.05 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -4.07 Total: -119.58 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.16 Total: -39.95 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.34 3.24 -71.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939040100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.938 kcal (2) G-P(sol) polarization free energy of solvation -74.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds