Wall clock time and date at job start Wed Apr 1 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46867 * 2 1 4 4 C 1.34777 * 120.00463 * 83.32206 * 3 2 1 5 5 O 1.21744 * 120.00790 * 184.49926 * 4 3 2 6 6 C 1.46200 * 119.99455 * 4.49478 * 4 3 2 7 7 O 1.35219 * 125.23075 * 353.99999 * 6 4 3 8 8 C 1.34766 * 110.96090 * 180.26432 * 7 6 4 9 9 C 1.39054 * 133.06836 * 179.70695 * 8 7 6 10 10 C 1.37804 * 119.86407 * 180.02562 * 9 8 7 11 11 C 1.38795 * 120.71721 * 0.02562 * 10 9 8 12 12 C 1.36670 * 120.41704 * 359.97438 * 11 10 9 13 13 C 1.39579 * 119.72712 * 0.02562 * 12 11 10 14 14 C 1.36605 * 125.22833 * 173.82511 * 6 4 3 15 15 O 1.35567 * 127.03704 * 0.02562 * 14 6 4 16 16 C 1.42905 * 116.99753 * 269.68518 * 15 14 6 17 17 C 1.46498 * 120.00072 * 263.31980 * 3 2 1 18 18 C 1.53953 * 113.74167 * 222.91863 * 17 3 2 19 19 N 1.47818 * 86.03666 * 222.08215 * 18 17 3 20 20 C 1.36933 * 134.45583 * 204.64229 * 19 18 17 21 21 H 1.07999 * 119.99832 * 179.86960 * 20 19 18 22 22 C 1.38812 * 119.99985 * 359.86967 * 20 19 18 23 23 N 1.31618 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99804 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47251 * 59.99866 * 24 22 20 26 26 H 1.48502 * 109.47438 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47477 * 300.00044 * 24 22 20 28 28 C 1.47586 * 91.04844 * 24.54860 * 19 18 17 29 29 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46973 * 299.99334 * 1 2 3 31 31 H 1.08998 * 109.47652 * 59.99702 * 1 2 3 32 32 H 1.09000 * 109.46973 * 240.00666 * 2 1 3 33 33 H 1.08998 * 109.47652 * 120.00298 * 2 1 3 34 34 H 1.08001 * 120.06419 * 0.04749 * 9 8 7 35 35 H 1.07996 * 119.63816 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.79271 * 180.02562 * 11 10 9 37 37 H 1.07990 * 120.13822 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.46977 * 60.00099 * 16 15 14 39 39 H 1.09002 * 109.46665 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.47064 * 300.00230 * 16 15 14 41 41 H 1.08999 * 112.94656 * 354.50836 * 17 3 2 42 42 H 1.08993 * 113.76858 * 336.34562 * 18 17 3 43 43 H 1.08999 * 113.76679 * 107.74413 * 18 17 3 44 44 H 0.97000 * 120.00377 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.76554 * 221.15108 * 28 19 18 46 46 H 1.09003 * 113.76636 * 89.75673 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1149 2.0619 1.1592 5 8 2.4421 3.2345 1.1513 6 6 1.8267 1.3920 2.4264 7 8 1.3461 0.1344 2.5522 8 6 1.1815 -0.1913 3.8495 9 6 0.7216 -1.3366 4.4901 10 6 0.6638 -1.3768 5.8663 11 6 1.0600 -0.2840 6.6247 12 6 1.5153 0.8520 6.0164 13 6 1.5813 0.9123 4.6235 14 6 2.0048 1.9392 3.6653 15 8 2.4715 3.1796 3.9508 16 6 3.8833 3.3175 4.1239 17 6 2.4015 2.0227 -1.2601 18 6 3.7036 2.8390 -1.1691 19 7 3.0025 3.8552 -1.9820 20 6 3.4073 4.8505 -2.8308 21 1 2.6740 5.4754 -3.3189 22 6 4.7601 5.0562 -3.0640 23 7 5.6538 4.2944 -2.4696 24 14 5.3123 6.4135 -4.2226 25 1 4.8325 7.7238 -3.7144 26 1 6.7953 6.4260 -4.2995 27 1 4.7482 6.1704 -5.5746 28 6 1.6917 3.3650 -1.5133 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.4106 -2.1930 3.9101 35 1 0.3056 -2.2680 6.3600 36 1 1.0089 -0.3319 7.7025 37 1 1.8228 1.6994 6.6109 38 1 4.3927 3.0163 3.2086 39 1 4.1220 4.3572 4.3478 40 1 4.2119 2.6841 4.9479 41 1 2.3691 1.3418 -2.1106 42 1 3.9431 3.1729 -0.1596 43 1 4.5492 2.3754 -1.6771 44 1 6.5991 4.4384 -2.6323 45 1 0.9340 3.3206 -2.2957 46 1 1.3390 3.8537 -0.6051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951121678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:04 Heat of formation + Delta-G solvation = 44.689848 kcal Electronic energy + Delta-G solvation = -31031.531020 eV Core-core repulsion = 26891.526432 eV Total energy + Delta-G solvation = -4140.004588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.70207 -39.96641 -38.34950 -38.11512 -36.77261 -35.33761 -32.27362 -32.05350 -30.64974 -30.13148 -29.68376 -27.45919 -26.89466 -24.82709 -24.66081 -23.32685 -23.00651 -22.68317 -21.33653 -20.25751 -19.19139 -18.20300 -17.36761 -16.92951 -16.62322 -16.48812 -15.74412 -15.37756 -15.32137 -14.99408 -14.83862 -14.72506 -14.51949 -14.23259 -14.16601 -13.66614 -13.54104 -13.01331 -12.89786 -12.58654 -12.35883 -12.35013 -12.25228 -11.82747 -11.63689 -11.40652 -11.36775 -11.26118 -10.96296 -10.79782 -10.58915 -10.14520 -10.08596 -10.04592 -9.94540 -9.54873 -9.41643 -8.92020 -8.62535 -8.39601 -8.07548 -6.73396 -5.66996 -2.97612 0.36603 1.05769 1.58383 2.31489 3.15899 3.22893 3.37099 3.45878 3.49726 3.51082 3.64963 4.18668 4.50007 4.56226 4.63156 4.78453 4.95109 5.00168 5.03588 5.13124 5.25962 5.27933 5.34950 5.38589 5.45390 5.47808 5.59384 5.65030 5.70781 5.75476 5.81664 5.86196 5.88264 5.96140 6.01134 6.13244 6.24669 6.29747 6.38370 6.60702 6.63931 6.81546 6.96741 7.34349 7.36644 7.57246 7.63171 7.71350 8.06792 8.38001 9.14154 9.80358 10.71120 11.50415 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.003038 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.876923 B = 9213.554039 C =10260.969230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.584 3.416 5 O -0.474 6.474 6 C -0.031 4.031 7 O -0.164 6.164 8 C 0.068 3.932 9 C -0.110 4.110 10 C -0.085 4.085 11 C -0.141 4.141 12 C -0.054 4.054 13 C -0.154 4.154 14 C 0.087 3.913 15 O -0.290 6.290 16 C 0.038 3.962 17 C 0.089 3.911 18 C 0.156 3.844 19 N -0.603 5.603 20 C -0.216 4.216 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.112 3.888 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.108 0.892 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.253 0.747 45 H 0.038 0.962 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 -15.828 17.503 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.323 5.323 4 C 0.370 3.630 5 O -0.349 6.349 6 C -0.081 4.081 7 O -0.067 6.067 8 C 0.020 3.980 9 C -0.129 4.129 10 C -0.103 4.103 11 C -0.160 4.160 12 C -0.073 4.073 13 C -0.155 4.155 14 C 0.038 3.962 15 O -0.206 6.206 16 C -0.056 4.056 17 C -0.014 4.014 18 C 0.030 3.970 19 N -0.329 5.329 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.015 4.015 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.408 -14.978 17.061 24.575 hybrid contribution 0.463 0.657 -0.410 0.902 sum -8.945 -14.321 16.651 23.714 Atomic orbital electron populations 1.22169 0.95797 1.01852 1.02419 1.21797 0.94693 0.82731 1.03235 1.48066 1.63540 1.13787 1.06880 1.16567 0.79536 0.85946 0.80966 1.91026 1.45447 1.13585 1.84805 1.22653 1.05602 0.83707 0.96149 1.84510 1.69703 1.28023 1.24429 1.19697 1.00402 0.95791 0.82103 1.19994 1.03419 0.95418 0.94039 1.20997 0.98234 0.98826 0.92264 1.20794 1.01503 0.93327 1.00334 1.20353 0.96957 0.98335 0.91609 1.20034 1.06405 0.94273 0.94837 1.19415 1.01121 0.86579 0.89066 1.85968 1.23687 1.21388 1.89508 1.23077 0.78702 1.03112 1.00662 1.24209 1.00397 0.93579 0.83210 1.22725 0.92190 0.86446 0.95620 1.45660 1.00590 1.37648 1.48983 1.18946 0.91200 1.07654 1.16577 0.90330 1.24767 0.95535 0.99684 1.00562 1.69816 1.00272 1.40648 1.46123 0.86198 0.77407 0.81675 0.80466 1.21246 1.21630 1.21160 1.22939 0.90640 0.90985 0.96969 0.91804 0.92648 0.92197 0.89886 0.89626 0.84629 0.84627 0.85166 0.85289 0.92595 0.88160 0.93844 0.87410 0.92986 0.91320 0.93741 0.94350 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.73 37.16 0.36 -1.46 16 2 C 0.10 1.23 5.74 -4.04 -0.02 1.21 16 3 N -0.59 -9.96 2.75 -169.60 -0.47 -10.42 16 4 C 0.58 10.90 6.99 -13.06 -0.09 10.81 16 5 O -0.47 -10.70 11.92 -6.43 -0.08 -10.78 16 6 C -0.03 -0.49 6.55 -36.98 -0.24 -0.73 16 7 O -0.16 -2.18 5.93 1.84 0.01 -2.17 16 8 C 0.07 0.82 7.39 -38.39 -0.28 0.53 16 9 C -0.11 -0.96 10.07 -39.44 -0.40 -1.36 16 10 C -0.09 -0.61 10.01 -39.53 -0.40 -1.00 16 11 C -0.14 -1.10 9.98 -39.94 -0.40 -1.49 16 12 C -0.05 -0.55 10.05 -39.65 -0.40 -0.95 16 13 C -0.15 -2.00 6.38 -105.09 -0.67 -2.67 16 14 C 0.09 1.36 6.52 -36.76 -0.24 1.12 16 15 O -0.29 -4.80 9.77 -29.97 -0.29 -5.09 16 16 C 0.04 0.52 11.13 101.05 1.12 1.64 16 17 C 0.09 1.76 4.60 -70.13 -0.32 1.44 16 18 C 0.16 3.93 6.79 -2.83 -0.02 3.91 16 19 N -0.60 -16.49 3.70 -177.84 -0.66 -17.15 16 20 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -28.29 11.39 55.49 0.63 -27.66 16 24 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.11 2.52 8.27 -2.96 -0.02 2.50 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.68 7.10 -51.93 -0.37 0.32 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 33 H 0.09 1.03 5.32 -51.93 -0.28 0.75 16 34 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 1.94 7.89 -51.93 -0.41 1.53 16 42 H 0.05 1.42 5.69 -51.93 -0.30 1.13 16 43 H 0.07 1.87 7.16 -51.93 -0.37 1.49 16 44 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.05 1.21 6.31 -51.93 -0.33 0.88 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -35.46 377.32 -8.70 -44.16 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.23 Total: -1.07 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.28 Total: 6.59 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.49 Total: -55.23 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.36 Total: -18.04 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.46 -8.70 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951121678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.849 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds