Wall clock time and date at job start Wed Apr 1 2020 03:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.46867 * 2 1 4 4 C 1.34777 * 120.00463 * 83.32206 * 3 2 1 5 5 O 1.21744 * 120.00790 * 184.49926 * 4 3 2 6 6 C 1.46200 * 119.99455 * 4.49478 * 4 3 2 7 7 O 1.35219 * 125.23075 * 353.99999 * 6 4 3 8 8 C 1.34766 * 110.96090 * 180.26432 * 7 6 4 9 9 C 1.39054 * 133.06836 * 179.70695 * 8 7 6 10 10 C 1.37804 * 119.86407 * 180.02562 * 9 8 7 11 11 C 1.38795 * 120.71721 * 0.02562 * 10 9 8 12 12 C 1.36670 * 120.41704 * 359.97438 * 11 10 9 13 13 C 1.39579 * 119.72712 * 0.02562 * 12 11 10 14 14 C 1.36605 * 125.22833 * 173.82511 * 6 4 3 15 15 O 1.35567 * 127.03704 * 0.02562 * 14 6 4 16 16 C 1.42905 * 116.99753 * 269.68518 * 15 14 6 17 17 C 1.46498 * 120.00072 * 263.31980 * 3 2 1 18 18 C 1.53953 * 113.74167 * 222.91863 * 17 3 2 19 19 N 1.47818 * 86.03666 * 222.08215 * 18 17 3 20 20 C 1.36933 * 134.45583 * 204.64229 * 19 18 17 21 21 H 1.07999 * 119.99832 * 179.86960 * 20 19 18 22 22 C 1.38812 * 119.99985 * 359.86967 * 20 19 18 23 23 N 1.31618 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99804 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47251 * 59.99866 * 24 22 20 26 26 H 1.48502 * 109.47438 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47477 * 300.00044 * 24 22 20 28 28 C 1.47586 * 91.04844 * 24.54860 * 19 18 17 29 29 H 1.09000 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46973 * 299.99334 * 1 2 3 31 31 H 1.08998 * 109.47652 * 59.99702 * 1 2 3 32 32 H 1.09000 * 109.46973 * 240.00666 * 2 1 3 33 33 H 1.08998 * 109.47652 * 120.00298 * 2 1 3 34 34 H 1.08001 * 120.06419 * 0.04749 * 9 8 7 35 35 H 1.07996 * 119.63816 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.79271 * 180.02562 * 11 10 9 37 37 H 1.07990 * 120.13822 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.46977 * 60.00099 * 16 15 14 39 39 H 1.09002 * 109.46665 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.47064 * 300.00230 * 16 15 14 41 41 H 1.08999 * 112.94656 * 354.50836 * 17 3 2 42 42 H 1.08993 * 113.76858 * 336.34562 * 18 17 3 43 43 H 1.08999 * 113.76679 * 107.74413 * 18 17 3 44 44 H 0.97000 * 120.00377 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.76554 * 221.15108 * 28 19 18 46 46 H 1.09003 * 113.76636 * 89.75673 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1149 2.0619 1.1592 5 8 2.4421 3.2345 1.1513 6 6 1.8267 1.3920 2.4264 7 8 1.3461 0.1344 2.5522 8 6 1.1815 -0.1913 3.8495 9 6 0.7216 -1.3366 4.4901 10 6 0.6638 -1.3768 5.8663 11 6 1.0600 -0.2840 6.6247 12 6 1.5153 0.8520 6.0164 13 6 1.5813 0.9123 4.6235 14 6 2.0048 1.9392 3.6653 15 8 2.4715 3.1796 3.9508 16 6 3.8833 3.3175 4.1239 17 6 2.4015 2.0227 -1.2601 18 6 3.7036 2.8390 -1.1691 19 7 3.0025 3.8552 -1.9820 20 6 3.4073 4.8505 -2.8308 21 1 2.6740 5.4754 -3.3189 22 6 4.7601 5.0562 -3.0640 23 7 5.6538 4.2944 -2.4696 24 14 5.3123 6.4135 -4.2226 25 1 4.8325 7.7238 -3.7144 26 1 6.7953 6.4260 -4.2995 27 1 4.7482 6.1704 -5.5746 28 6 1.6917 3.3650 -1.5133 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.4106 -2.1930 3.9101 35 1 0.3056 -2.2680 6.3600 36 1 1.0089 -0.3319 7.7025 37 1 1.8228 1.6994 6.6109 38 1 4.3927 3.0163 3.2086 39 1 4.1220 4.3572 4.3478 40 1 4.2119 2.6841 4.9479 41 1 2.3691 1.3418 -2.1106 42 1 3.9431 3.1729 -0.1596 43 1 4.5492 2.3754 -1.6771 44 1 6.5991 4.4384 -2.6323 45 1 0.9340 3.3206 -2.2957 46 1 1.3390 3.8537 -0.6051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951121678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:03 Heat of formation + Delta-G solvation = 22.286015 kcal Electronic energy + Delta-G solvation = -31032.502523 eV Core-core repulsion = 26891.526432 eV Total energy + Delta-G solvation = -4140.976091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.67826 -41.46285 -39.54146 -38.98918 -38.43264 -36.71503 -34.18313 -33.18415 -31.45287 -31.32931 -30.79111 -29.24195 -28.14094 -26.61467 -26.19262 -24.65360 -24.15838 -23.60952 -22.41298 -21.82336 -20.55636 -19.15064 -18.80346 -18.49049 -17.91532 -17.71322 -17.10301 -16.81312 -16.54930 -16.33163 -16.09330 -16.00756 -15.80948 -15.58714 -15.24955 -15.03188 -14.49372 -14.45004 -14.18722 -13.97924 -13.74052 -13.40071 -13.30654 -13.04408 -13.00781 -12.91244 -12.82221 -12.70148 -12.56305 -12.15211 -12.07817 -11.96831 -11.75546 -11.50904 -11.35003 -11.03440 -11.00156 -10.70213 -9.75490 -9.65901 -9.21329 -8.90957 -7.91125 -5.24976 -0.61747 0.30942 0.64498 1.24277 1.42521 1.47867 1.53611 1.87679 1.90344 2.47669 2.49558 2.71223 3.14632 3.27439 3.47747 3.64609 3.77098 3.79027 3.94109 4.06518 4.20502 4.21575 4.23749 4.28360 4.34667 4.39478 4.44980 4.51983 4.54858 4.59244 4.67328 4.78615 4.84937 4.96464 4.98711 5.00163 5.17695 5.21011 5.22783 5.34893 5.38027 5.46174 5.47167 5.52108 5.79761 5.89557 5.97424 6.22090 6.31349 6.89468 6.97400 7.58253 8.55314 9.26006 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.003038 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.876923 B = 9213.554039 C =10260.969230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.587 5.587 4 C 0.581 3.419 5 O -0.528 6.528 6 C -0.055 4.055 7 O -0.159 6.159 8 C 0.054 3.946 9 C -0.113 4.113 10 C -0.067 4.067 11 C -0.130 4.130 12 C -0.070 4.070 13 C -0.180 4.180 14 C 0.078 3.922 15 O -0.316 6.316 16 C 0.040 3.960 17 C 0.125 3.875 18 C 0.155 3.845 19 N -0.630 5.630 20 C -0.237 4.237 21 H 0.083 0.917 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.985 3.015 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.269 1.269 28 C 0.113 3.887 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.135 0.865 38 H 0.027 0.973 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.023 0.977 43 H 0.042 0.958 44 H 0.249 0.751 45 H 0.061 0.939 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 -18.882 18.952 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.319 5.319 4 C 0.369 3.631 5 O -0.407 6.407 6 C -0.106 4.106 7 O -0.061 6.061 8 C 0.007 3.993 9 C -0.131 4.131 10 C -0.085 4.085 11 C -0.148 4.148 12 C -0.088 4.088 13 C -0.181 4.181 14 C 0.030 3.970 15 O -0.232 6.232 16 C -0.053 4.053 17 C 0.021 3.979 18 C 0.029 3.971 19 N -0.357 5.357 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.812 3.188 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.195 1.195 28 C -0.013 4.013 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.181 0.819 35 H 0.196 0.804 36 H 0.182 0.818 37 H 0.153 0.847 38 H 0.046 0.954 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.155 0.845 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.329 -18.091 18.522 28.261 hybrid contribution 0.965 1.489 -0.605 1.875 sum -10.364 -16.602 17.917 26.534 Atomic orbital electron populations 1.22108 0.94327 1.03616 1.01369 1.22130 0.95821 0.80016 1.04764 1.48051 1.63113 1.15366 1.05335 1.16911 0.78491 0.85539 0.82163 1.90984 1.47860 1.15969 1.85877 1.21976 1.08402 0.85320 0.94897 1.84433 1.69819 1.26382 1.25474 1.20248 1.00995 0.96811 0.81273 1.20486 1.02676 0.94927 0.95013 1.21587 0.95568 0.99784 0.91549 1.21264 0.99169 0.92183 1.02181 1.20612 0.97748 0.99926 0.90475 1.20139 1.08239 0.93736 0.96015 1.19887 1.00411 0.86519 0.90205 1.85882 1.24903 1.22692 1.89761 1.23146 0.77420 1.04511 1.00240 1.23595 0.95841 0.93145 0.85284 1.22516 0.93816 0.87391 0.93369 1.46068 1.02882 1.37752 1.48964 1.19390 0.91791 1.08395 1.16942 0.89905 1.25701 0.95550 1.02278 1.02565 1.70033 1.00161 1.42297 1.47701 0.85073 0.76564 0.78430 0.78755 1.20828 1.21754 1.19490 1.22972 0.89677 0.92096 0.96552 0.88534 0.94267 0.92660 0.87586 0.88839 0.81853 0.80367 0.81772 0.84702 0.95381 0.86913 0.91047 0.84493 0.95929 0.94000 0.94262 0.92134 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.73 71.98 0.70 -2.47 16 2 C 0.09 2.21 5.74 86.38 0.50 2.71 16 3 N -0.59 -20.27 2.75 -808.69 -2.22 -22.50 16 4 C 0.58 23.10 6.99 86.31 0.60 23.70 16 5 O -0.53 -26.02 11.92 6.58 0.08 -25.94 16 6 C -0.06 -1.87 6.55 23.96 0.16 -1.71 16 7 O -0.16 -4.17 5.93 -16.35 -0.10 -4.27 16 8 C 0.05 1.22 7.39 23.04 0.17 1.39 16 9 C -0.11 -1.54 10.07 22.36 0.23 -1.31 16 10 C -0.07 -0.61 10.01 22.30 0.22 -0.39 16 11 C -0.13 -1.46 9.98 22.04 0.22 -1.24 16 12 C -0.07 -1.29 10.05 22.23 0.22 -1.06 16 13 C -0.18 -4.61 6.38 -20.17 -0.13 -4.73 16 14 C 0.08 2.59 6.52 24.10 0.16 2.75 16 15 O -0.32 -11.26 9.77 -77.67 -0.76 -12.02 16 16 C 0.04 1.18 11.13 113.37 1.26 2.44 16 17 C 0.13 5.07 4.60 46.75 0.21 5.29 16 18 C 0.16 8.30 6.79 86.44 0.59 8.89 16 19 N -0.63 -35.93 3.70 -716.56 -2.65 -38.58 16 20 C -0.24 -14.39 10.70 84.03 0.90 -13.49 16 21 H 0.08 4.79 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 23 N -0.95 -61.01 11.39 21.65 0.25 -60.76 16 24 Si 0.98 48.24 29.55 68.60 2.03 50.27 16 25 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 C 0.11 5.28 8.27 86.48 0.72 5.99 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 0.93 7.10 -2.39 -0.02 0.91 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 2.04 7.86 -2.39 -0.02 2.02 16 33 H 0.09 2.12 5.32 -2.39 -0.01 2.11 16 34 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 36 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 37 H 0.14 2.22 8.06 -2.92 -0.02 2.20 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.14 4.77 7.89 -2.39 -0.02 4.75 16 42 H 0.02 1.36 5.69 -2.39 -0.01 1.35 16 43 H 0.04 2.42 7.16 -2.39 -0.02 2.40 16 44 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.03 1.61 6.31 -2.39 -0.02 1.60 16 Total: -1.00 -84.30 377.32 4.82 -79.49 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.00 Total: 11.23 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 7.19 Total: 23.08 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.63 Total: -121.84 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.78 Total: -42.22 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -84.30 4.82 -79.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951121678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.771 kcal (2) G-P(sol) polarization free energy of solvation -84.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds