Wall clock time and date at job start Wed Apr 1 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35564 * 116.99491 * 2 1 4 4 C 1.46696 * 127.03744 * 270.16310 * 3 2 1 5 5 C 1.39565 * 134.08338 * 359.95014 * 4 3 2 6 6 C 1.36678 * 119.73076 * 180.36672 * 5 4 3 7 7 C 1.38804 * 120.40711 * 0.02562 * 6 5 4 8 8 C 1.37793 * 120.72327 * 359.92569 * 7 6 5 9 9 C 1.39056 * 119.86377 * 0.10840 * 8 7 6 10 10 O 1.34761 * 133.06874 * 179.91867 * 9 8 7 11 11 C 1.35227 * 110.96126 * 179.97438 * 10 9 8 12 12 C 1.46191 * 125.22846 * 179.97438 * 11 10 9 13 13 O 1.21756 * 119.99961 * 180.02562 * 12 11 10 14 14 N 1.34780 * 120.00058 * 0.02786 * 12 11 10 15 15 C 1.46496 * 119.99734 * 180.02562 * 14 12 11 16 16 H 1.08995 * 109.47552 * 324.99740 * 15 14 12 17 17 C 1.53008 * 109.47421 * 84.99427 * 15 14 12 18 18 C 1.52998 * 109.46930 * 204.99506 * 15 14 12 19 19 C 1.53504 * 114.20785 * 179.97438 * 18 15 14 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 15 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.09003 * 109.47099 * 299.99344 * 1 2 3 31 31 H 1.09000 * 109.47390 * 60.00057 * 1 2 3 32 32 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 33 33 H 1.08003 * 120.13960 * 0.34343 * 5 4 3 34 34 H 1.07998 * 119.79492 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.63248 * 179.97438 * 7 6 5 36 36 H 1.08000 * 120.06952 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00127 * 359.97438 * 14 12 11 38 38 H 1.08991 * 109.47021 * 179.97438 * 17 15 14 39 39 H 1.08994 * 109.46942 * 300.00242 * 17 15 14 40 40 H 1.09004 * 109.46240 * 60.00200 * 17 15 14 41 41 H 1.09002 * 113.41395 * 313.19707 * 18 15 14 42 42 H 1.08997 * 113.46758 * 105.56146 * 19 18 15 43 43 H 1.09000 * 113.51898 * 335.13170 * 19 18 15 44 44 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 45 45 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 46 46 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2079 0.0000 4 6 2.4425 1.9968 -1.1710 5 6 2.3420 1.8062 -2.5499 6 6 2.8311 2.7556 -3.4028 7 6 3.4270 3.9066 -2.9058 8 6 3.5347 4.1133 -1.5477 9 6 3.0447 3.1606 -0.6612 10 8 3.0096 3.0870 0.6839 11 6 2.4182 1.9409 1.0905 12 6 2.2166 1.5439 2.4829 13 8 1.6711 0.4866 2.7417 14 7 2.6345 2.3484 3.4803 15 6 2.4329 1.9503 4.8757 16 1 1.4909 1.4096 4.9668 17 6 3.5848 1.0462 5.3196 18 6 2.3930 3.1973 5.7611 19 6 2.1846 2.9034 7.2533 20 7 1.2858 4.0664 7.3036 21 6 0.8855 4.9626 8.2585 22 1 1.3570 4.9629 9.2301 23 6 -0.1259 5.8708 7.9774 24 7 -0.5869 6.6570 8.9271 25 14 -0.8328 5.9770 6.2517 26 1 -1.9733 6.9281 6.2416 27 1 0.2168 6.4528 5.3152 28 1 -1.3041 4.6345 5.8263 29 6 1.0007 3.8391 5.8788 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8800 0.9120 -2.9415 34 1 2.7535 2.6094 -4.4700 35 1 3.8096 4.6485 -3.5911 36 1 3.9999 5.0129 -1.1725 37 1 3.0693 3.1906 3.2742 38 1 3.4350 0.7504 6.3578 39 1 3.6132 0.1578 4.6887 40 1 4.5268 1.5870 5.2285 41 1 3.1974 3.9027 5.5524 42 1 3.0881 3.0269 7.8503 43 1 1.6800 1.9562 7.4437 44 1 -0.2733 6.5516 9.8388 45 1 0.1839 3.1384 5.7060 46 1 0.8956 4.7598 5.3049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970258770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:06 Heat of formation + Delta-G solvation = 26.847942 kcal Electronic energy + Delta-G solvation = -29859.597548 eV Core-core repulsion = 25718.819277 eV Total energy + Delta-G solvation = -4140.778271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.86780 -39.99193 -38.77953 -38.46772 -38.09813 -35.13189 -32.50399 -32.46156 -31.24475 -30.69741 -29.59404 -27.77491 -27.30434 -25.56448 -24.75398 -23.60010 -23.12075 -21.82248 -21.10049 -20.64623 -19.61619 -18.38553 -18.33512 -17.49867 -17.05247 -16.93411 -16.36910 -15.76325 -15.44719 -15.33825 -15.21631 -15.03500 -14.77262 -14.51358 -14.19257 -13.88833 -13.77854 -13.40393 -13.17954 -13.00543 -12.70353 -12.49338 -12.33337 -12.09004 -11.93432 -11.85658 -11.56338 -11.54421 -10.97242 -10.69789 -10.53516 -10.38003 -10.30662 -10.29157 -10.07120 -9.34864 -9.15088 -9.11634 -9.00580 -8.91451 -8.53522 -7.17830 -6.30408 -3.24537 0.13040 0.89255 1.34776 2.08236 2.86788 2.95360 3.19027 3.39324 3.39489 3.43674 3.63643 4.04980 4.33974 4.48429 4.58547 4.60659 4.67532 4.79643 4.83549 4.86866 4.98803 5.03773 5.07822 5.16563 5.19987 5.39750 5.44358 5.45918 5.52220 5.55800 5.72118 5.73571 5.82540 5.84549 5.96512 5.98472 6.07716 6.11024 6.21546 6.24297 6.27253 6.36201 6.46945 6.59482 6.88446 7.07378 7.10621 7.36098 7.95875 8.22639 8.96591 9.48877 10.35332 11.19551 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002800 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.865418 B = 9998.364320 C =10771.267337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.292 6.292 3 C 0.096 3.904 4 C -0.158 4.158 5 C -0.053 4.053 6 C -0.139 4.139 7 C -0.080 4.080 8 C -0.110 4.110 9 C 0.080 3.920 10 O -0.173 6.173 11 C -0.041 4.041 12 C 0.596 3.404 13 O -0.506 6.506 14 N -0.706 5.706 15 C 0.151 3.849 16 H 0.094 0.906 17 C -0.159 4.159 18 C -0.141 4.141 19 C 0.135 3.865 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.083 0.917 23 C -0.025 4.025 24 N -0.934 5.934 25 Si 1.070 2.930 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.102 3.898 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.406 0.594 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.261 0.739 45 H 0.045 0.955 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.980 -10.450 -26.313 29.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.047 3.953 4 C -0.160 4.160 5 C -0.071 4.071 6 C -0.158 4.158 7 C -0.098 4.098 8 C -0.128 4.128 9 C 0.032 3.968 10 O -0.074 6.074 11 C -0.091 4.091 12 C 0.381 3.619 13 O -0.382 6.382 14 N -0.356 5.356 15 C 0.047 3.953 16 H 0.112 0.888 17 C -0.217 4.217 18 C -0.161 4.161 19 C 0.008 3.992 20 N -0.357 5.357 21 C -0.429 4.429 22 H 0.101 0.899 23 C -0.224 4.224 24 N -0.576 5.576 25 Si 0.902 3.098 26 H -0.222 1.222 27 H -0.222 1.222 28 H -0.214 1.214 29 C -0.023 4.023 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.598 -10.165 -26.614 29.485 hybrid contribution 1.077 -0.383 0.825 1.410 sum 8.675 -10.548 -25.789 29.182 Atomic orbital electron populations 1.23086 0.77711 1.03864 1.00957 1.85946 1.20542 1.20956 1.93261 1.19423 0.99191 0.87504 0.89181 1.20007 1.05700 0.95689 0.94575 1.20349 0.97480 0.99232 0.90075 1.20841 1.00353 0.94384 1.00173 1.21052 0.97440 0.97552 0.93766 1.20062 1.03129 0.98517 0.91124 1.19545 0.99908 0.96266 0.81080 1.84160 1.66298 1.36181 1.20809 1.22319 1.04861 0.86929 0.95020 1.16415 0.79565 0.84377 0.81549 1.90931 1.42856 1.22368 1.82083 1.46057 1.60041 1.23205 1.06289 1.21138 1.00038 0.95871 0.78249 0.88838 1.22132 0.98106 0.99455 1.02056 1.23586 0.99890 0.95993 0.96585 1.22252 0.94121 0.91404 0.91400 1.45968 1.53260 1.29751 1.06696 1.20157 1.17543 1.11218 0.94028 0.89899 1.25711 0.94975 0.95593 1.06107 1.70911 1.44722 1.40483 1.01517 0.83722 0.75729 0.75630 0.74683 1.22199 1.22152 1.21437 1.22843 0.93926 0.97920 0.87651 0.92656 0.93578 0.88145 0.85143 0.84928 0.84328 0.84310 0.75903 0.90958 0.92343 0.92383 0.88238 0.93412 0.94218 0.92920 0.93719 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.13 101.05 1.12 1.50 16 2 O -0.29 -3.85 9.76 -30.34 -0.30 -4.14 16 3 C 0.10 1.26 6.52 -36.76 -0.24 1.02 16 4 C -0.16 -1.79 6.38 -105.10 -0.67 -2.46 16 5 C -0.05 -0.46 10.05 -39.65 -0.40 -0.85 16 6 C -0.14 -0.91 9.98 -39.94 -0.40 -1.31 16 7 C -0.08 -0.51 10.01 -39.53 -0.40 -0.90 16 8 C -0.11 -0.90 10.07 -39.44 -0.40 -1.29 16 9 C 0.08 0.89 7.39 -38.39 -0.28 0.60 16 10 O -0.17 -2.13 10.28 1.83 0.02 -2.11 16 11 C -0.04 -0.55 7.07 -36.98 -0.26 -0.81 16 12 C 0.60 8.70 7.73 -13.07 -0.10 8.60 16 13 O -0.51 -8.56 15.85 -6.82 -0.11 -8.67 16 14 N -0.71 -9.33 5.07 -55.26 -0.28 -9.62 16 15 C 0.15 2.13 2.47 -67.93 -0.17 1.97 16 16 H 0.09 1.47 7.32 -51.93 -0.38 1.09 16 17 C -0.16 -1.95 9.29 37.16 0.35 -1.60 16 18 C -0.14 -2.30 3.67 -89.96 -0.33 -2.63 16 19 C 0.14 2.57 7.33 -8.50 -0.06 2.51 16 20 N -0.63 -15.49 3.69 -184.57 -0.68 -16.17 16 21 C -0.30 -8.81 11.08 -15.06 -0.17 -8.98 16 22 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 23 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 24 N -0.93 -29.76 13.70 55.49 0.76 -29.00 16 25 Si 1.07 27.21 25.16 -169.99 -4.28 22.93 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.29 -7.01 6.51 56.52 0.37 -6.64 16 28 H -0.29 -6.90 6.21 56.52 0.35 -6.55 16 29 C 0.10 2.15 5.27 -8.36 -0.04 2.10 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 34 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.41 4.68 8.31 -40.82 -0.34 4.34 16 38 H 0.07 0.84 7.48 -51.93 -0.39 0.46 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 45 H 0.05 0.95 7.44 -51.93 -0.39 0.57 16 46 H 0.05 1.13 4.73 -51.93 -0.25 0.88 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -35.41 383.69 -8.10 -43.51 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.47 Total: 0.87 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.54 Total: -3.39 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.20 Total: -54.78 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.39 Total: -14.92 kcal Atomic # 14 Polarization: 27.21 SS G_CDS: -4.28 Total: 22.93 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.41 -8.10 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970258770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.356 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds