Wall clock time and date at job start Wed Apr 1 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35951 * 116.99627 * 2 1 4 4 C 1.38336 * 120.06352 * 0.69617 * 3 2 1 5 5 C 1.38607 * 120.58578 * 179.85580 * 4 3 2 6 6 C 1.37870 * 120.25371 * 359.65783 * 5 4 3 7 7 C 1.39188 * 119.73054 * 359.97438 * 6 5 4 8 8 C 1.47662 * 134.22533 * 179.97438 * 7 6 5 9 9 C 1.47072 * 127.13679 * 0.02562 * 8 7 6 10 10 O 1.21643 * 120.00154 * 352.63458 * 9 8 7 11 11 N 1.34780 * 119.99548 * 172.63192 * 9 8 7 12 12 C 1.47425 * 125.65196 * 354.33317 * 11 9 8 13 13 C 1.55386 * 104.87369 * 204.16488 * 12 11 9 14 14 C 1.55158 * 101.36712 * 323.01812 * 13 12 11 15 15 H 1.09002 * 110.71864 * 153.94684 * 14 13 12 16 16 N 1.46496 * 110.71882 * 277.04114 * 14 13 12 17 17 C 1.36934 * 120.00008 * 271.15534 * 16 14 13 18 18 H 1.07998 * 119.99851 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99910 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00143 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99895 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47140 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47519 * 300.00151 * 21 19 17 24 24 H 1.48501 * 109.47188 * 60.00213 * 21 19 17 25 25 C 1.47027 * 125.64413 * 174.37251 * 11 9 8 26 26 H 1.09001 * 109.88166 * 59.48710 * 25 11 9 27 27 C 1.53001 * 109.88053 * 298.32488 * 25 11 9 28 28 C 1.36068 * 105.72219 * 179.74358 * 8 7 6 29 29 O 1.33779 * 109.83548 * 0.25717 * 28 8 7 30 30 C 1.34954 * 111.33109 * 0.02562 * 29 28 8 31 31 H 1.08997 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47136 * 300.00091 * 1 2 3 33 33 H 1.09004 * 109.47498 * 60.00203 * 1 2 3 34 34 H 1.07994 * 119.70386 * 359.49259 * 4 3 2 35 35 H 1.08002 * 119.87473 * 179.63884 * 5 4 3 36 36 H 1.08003 * 120.13481 * 180.02562 * 6 5 4 37 37 H 1.08996 * 110.36433 * 323.00105 * 12 11 9 38 38 H 1.08995 * 110.36355 * 85.32542 * 12 11 9 39 39 H 1.08999 * 111.18747 * 204.97897 * 13 12 11 40 40 H 1.09005 * 111.01772 * 80.98195 * 13 12 11 41 41 H 0.97006 * 120.00083 * 91.15782 * 16 14 13 42 42 H 0.96995 * 119.99817 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.47178 * 302.18938 * 27 25 11 44 44 H 1.08995 * 109.47314 * 62.19641 * 27 25 11 45 45 H 1.09008 * 109.46606 * 182.19033 * 27 25 11 46 46 H 1.08005 * 125.08221 * 180.30137 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2940 2.3723 0.0145 5 6 1.9119 3.6130 0.0177 6 6 3.2876 3.7039 0.0135 7 6 4.0560 2.5433 0.0065 8 6 5.5069 2.2688 0.0002 9 6 6.5973 3.2557 0.0001 10 8 6.3467 4.4390 -0.1293 11 7 7.8742 2.8489 0.1436 12 6 8.3100 1.4691 0.4257 13 6 9.7033 1.6202 1.0968 14 6 10.2956 2.8164 0.3059 15 1 11.0355 3.3467 0.9055 16 7 10.8833 2.3627 -0.9570 17 6 12.1945 1.9702 -0.9999 18 1 12.7952 1.9948 -0.1027 19 6 12.7513 1.5398 -2.1964 20 7 12.0191 1.5093 -3.2897 21 14 14.5398 1.0037 -2.2549 22 1 14.8884 0.5929 -3.6387 23 1 15.4092 2.1341 -1.8408 24 1 14.7437 -0.1415 -1.3318 25 6 9.0633 3.7081 0.0454 26 1 9.0124 4.4984 0.7944 27 6 9.1496 4.3190 -1.3547 28 6 5.6256 0.9133 0.0008 29 8 4.4116 0.3513 0.0011 30 6 3.4380 1.2858 0.0002 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 0.2158 2.3114 0.0176 35 1 1.3135 4.5120 0.0232 36 1 3.7671 4.6716 0.0163 37 1 7.6119 0.9827 1.1070 38 1 8.3951 0.9013 -0.5008 39 1 10.3066 0.7231 0.9583 40 1 9.6034 1.8625 2.1549 41 1 10.3437 2.3403 -1.7627 42 1 12.4083 1.2089 -4.1258 43 1 9.1804 3.5220 -2.0976 44 1 8.2766 4.9471 -1.5316 45 1 10.0536 4.9232 -1.4323 46 1 6.5603 0.3720 0.0017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986290732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:35 Heat of formation + Delta-G solvation = -24.993310 kcal Electronic energy + Delta-G solvation = -30082.814619 eV Core-core repulsion = 25939.788342 eV Total energy + Delta-G solvation = -4143.026276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.75325 -41.22494 -40.52092 -38.83974 -37.91678 -35.80845 -34.16361 -32.99678 -32.24426 -31.40740 -30.80160 -29.88320 -28.15992 -26.91860 -25.60886 -25.27800 -24.07500 -23.33217 -22.80761 -21.15989 -20.25171 -19.44603 -18.95121 -18.76820 -17.85540 -17.73862 -17.43247 -16.85704 -16.48955 -16.31087 -16.22335 -16.05025 -15.92363 -15.58496 -15.31116 -14.76989 -14.42376 -14.26151 -14.19385 -14.10390 -13.70863 -13.37157 -13.29056 -13.21856 -12.94746 -12.82237 -12.57190 -12.50481 -12.35445 -12.26793 -12.21503 -12.20333 -12.09142 -11.65428 -11.45438 -11.07281 -10.92203 -10.87756 -9.77620 -9.72697 -8.97546 -8.95849 -7.89579 -5.17590 -0.31751 0.14725 0.62999 1.47903 1.52122 1.53586 1.59327 1.82894 2.10029 2.23012 2.59816 2.62485 3.27869 3.31053 3.42718 3.66454 3.74357 3.83375 3.90612 3.96513 4.03750 4.10955 4.22834 4.26283 4.27996 4.36152 4.39419 4.43007 4.45861 4.51701 4.64484 4.76618 4.81186 4.84817 4.91840 5.02797 5.05207 5.19961 5.22979 5.33385 5.35378 5.40927 5.46544 5.49757 5.59868 5.68367 6.31554 6.31676 6.46754 7.06158 7.39441 8.12848 8.36589 9.33406 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.002462 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.034125 B =11368.828583 C =12021.021368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.140 3.860 4 C -0.182 4.182 5 C -0.077 4.077 6 C -0.126 4.126 7 C -0.072 4.072 8 C -0.257 4.257 9 C 0.600 3.400 10 O -0.574 6.574 11 N -0.603 5.603 12 C 0.087 3.913 13 C -0.144 4.144 14 C 0.164 3.836 15 H 0.076 0.924 16 N -0.724 5.724 17 C -0.233 4.233 18 H 0.082 0.918 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.968 3.032 22 H -0.303 1.303 23 H -0.281 1.281 24 H -0.276 1.276 25 C 0.135 3.865 26 H 0.083 0.917 27 C -0.137 4.137 28 C 0.085 3.915 29 O -0.179 6.179 30 C -0.011 4.011 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.377 0.623 42 H 0.248 0.752 43 H 0.043 0.957 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.043 -1.903 10.851 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.094 3.906 4 C -0.200 4.200 5 C -0.095 4.095 6 C -0.144 4.144 7 C -0.073 4.073 8 C -0.261 4.261 9 C 0.392 3.608 10 O -0.455 6.455 11 N -0.335 5.335 12 C -0.034 4.034 13 C -0.184 4.184 14 C 0.054 3.946 15 H 0.093 0.907 16 N -0.366 5.366 17 C -0.365 4.365 18 H 0.099 0.901 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.230 1.230 23 H -0.208 1.208 24 H -0.202 1.202 25 C 0.031 3.969 26 H 0.101 0.899 27 C -0.196 4.196 28 C 0.017 3.983 29 O -0.078 6.078 30 C -0.057 4.057 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.197 0.803 35 H 0.186 0.814 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.212 0.788 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -24.067 -1.776 10.820 26.447 hybrid contribution 1.118 -0.021 -0.925 1.451 sum -22.950 -1.797 9.895 25.057 Atomic orbital electron populations 1.23476 0.75392 1.06015 1.03013 1.86131 1.24346 1.25806 1.88610 1.17936 0.86047 0.86796 0.99804 1.21391 1.01598 0.89844 1.07169 1.21263 0.92945 0.98730 0.96520 1.20721 0.94241 0.96881 1.02557 1.19427 0.91039 0.93855 1.02992 1.20874 0.92780 0.94053 1.18415 1.16867 0.80813 0.86984 0.76171 1.90715 1.83625 1.18469 1.52703 1.48436 1.04309 1.11286 1.69484 1.22862 0.97459 0.82563 1.00522 1.23450 0.94462 1.00938 0.99585 1.21411 0.91864 0.93175 0.88147 0.90652 1.42692 1.09682 1.77618 1.06589 1.19577 0.88430 1.33845 0.94610 0.90057 1.25465 1.01667 1.03710 0.95684 1.69807 1.37084 1.55419 0.99685 0.85291 0.80808 0.78247 0.75845 1.23012 1.20781 1.20241 1.21865 0.84374 0.93218 0.97423 0.89892 1.21767 1.01000 1.00169 0.96619 1.25822 0.87731 0.92166 0.92606 1.83921 1.13788 1.35571 1.74561 1.19001 0.88637 0.86487 1.11568 0.86330 0.90702 0.90934 0.80342 0.81385 0.85600 0.87697 0.91174 0.89863 0.88901 0.78819 0.94291 0.93836 0.93383 0.91910 0.73184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.74 10.50 -93.00 -0.98 -7.72 16 3 C 0.14 3.14 6.70 22.57 0.15 3.29 16 4 C -0.18 -2.95 9.02 22.38 0.20 -2.75 16 5 C -0.08 -1.38 10.03 22.27 0.22 -1.16 16 6 C -0.13 -3.30 9.89 22.41 0.22 -3.08 16 7 C -0.07 -2.14 6.29 -20.10 -0.13 -2.27 16 8 C -0.26 -7.87 6.23 -18.97 -0.12 -7.99 16 9 C 0.60 20.95 7.58 86.56 0.66 21.60 16 10 O -0.57 -23.37 15.60 -4.17 -0.06 -23.44 16 11 N -0.60 -19.24 3.07 -791.32 -2.43 -21.67 16 12 C 0.09 2.31 5.11 87.02 0.44 2.75 16 13 C -0.14 -4.04 6.81 32.15 0.22 -3.82 16 14 C 0.16 5.81 3.46 46.18 0.16 5.97 16 15 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 16 N -0.72 -33.17 4.61 -317.33 -1.46 -34.64 16 17 C -0.23 -11.90 9.97 84.03 0.84 -11.06 16 18 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 20 N -0.97 -57.37 13.06 21.65 0.28 -57.09 16 21 Si 0.97 44.47 29.55 68.60 2.03 46.49 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.13 4.63 3.40 45.34 0.15 4.79 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 C -0.14 -5.32 8.47 71.98 0.61 -4.71 16 28 C 0.09 2.14 10.38 67.31 0.70 2.84 16 29 O -0.18 -4.91 10.53 -4.04 -0.04 -4.95 16 30 C -0.01 -0.30 7.33 23.00 0.17 -0.13 16 31 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.41 7.63 -2.39 -0.02 0.39 16 33 H 0.07 0.43 7.68 -2.38 -0.02 0.41 16 34 H 0.18 1.40 6.26 -2.91 -0.02 1.38 16 35 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.13 3.57 7.56 -2.91 -0.02 3.55 16 37 H 0.11 2.04 5.97 -2.39 -0.01 2.02 16 38 H 0.07 1.99 7.75 -2.39 -0.02 1.97 16 39 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.38 19.07 5.58 -92.70 -0.52 18.56 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.04 1.88 6.21 -2.39 -0.01 1.86 16 44 H 0.05 1.88 7.10 -2.39 -0.02 1.86 16 45 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.25 4.66 4.76 -2.91 -0.01 4.64 16 Total: -1.00 -72.88 373.72 3.93 -68.95 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.52 Total: 32.06 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.08 Total: 2.00 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -3.60 Total: -113.40 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.08 Total: -36.10 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.88 3.93 -68.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986290732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.953 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds