Wall clock time and date at job start Wed Apr 1 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35970 * 117.00008 * 2 1 4 4 C 1.39125 * 119.95531 * 359.97438 * 3 2 1 5 5 C 1.37795 * 120.59828 * 179.97438 * 4 3 2 6 6 C 1.38980 * 120.04758 * 0.02562 * 5 4 3 7 7 O 1.34985 * 133.03470 * 179.97438 * 6 5 4 8 8 C 1.33778 * 111.34402 * 180.02562 * 7 6 5 9 9 C 1.36067 * 109.85621 * 0.02562 * 8 7 6 10 10 C 1.47066 * 127.13777 * 179.97438 * 9 8 7 11 11 O 1.21654 * 120.00097 * 171.70952 * 10 9 8 12 12 N 1.34780 * 120.00148 * 351.71388 * 10 9 8 13 13 C 1.47426 * 125.64478 * 1.32309 * 12 10 9 14 14 C 1.54919 * 104.82733 * 204.09022 * 13 12 10 15 15 C 1.55153 * 101.58099 * 322.98972 * 14 13 12 16 16 H 1.09005 * 110.72115 * 277.14180 * 15 14 13 17 17 N 1.46497 * 110.72326 * 153.86762 * 15 14 13 18 18 C 1.36938 * 120.00163 * 86.44774 * 17 15 14 19 19 H 1.08000 * 119.99569 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99932 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99815 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00343 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47245 * 89.99981 * 22 20 18 24 24 H 1.48499 * 109.47307 * 210.00291 * 22 20 18 25 25 H 1.48504 * 109.47001 * 330.00014 * 22 20 18 26 26 C 1.47020 * 125.64834 * 181.00958 * 12 10 9 27 27 H 1.08998 * 109.88458 * 59.56086 * 26 12 10 28 28 C 1.52999 * 109.88348 * 298.39657 * 26 12 10 29 29 C 1.40217 * 119.34637 * 359.97438 * 6 5 4 30 30 C 1.38291 * 119.96003 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46692 * 60.00417 * 1 2 3 32 32 H 1.08994 * 109.46751 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47135 * 300.00152 * 1 2 3 34 34 H 1.08002 * 119.70642 * 0.02562 * 4 3 2 35 35 H 1.07998 * 119.97641 * 180.02562 * 5 4 3 36 36 H 1.08004 * 125.07047 * 180.27130 * 8 7 6 37 37 H 1.08997 * 110.36478 * 322.92039 * 13 12 10 38 38 H 1.08997 * 110.37123 * 85.25334 * 13 12 10 39 39 H 1.09000 * 111.00113 * 81.06106 * 14 13 12 40 40 H 1.08993 * 111.00159 * 204.87511 * 14 13 12 41 41 H 0.97000 * 119.99989 * 266.45547 * 17 15 14 42 42 H 0.96996 * 119.99757 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.47468 * 61.45425 * 28 26 12 44 44 H 1.09000 * 109.47401 * 181.45285 * 28 26 12 45 45 H 1.08999 * 109.47190 * 301.45384 * 28 26 12 46 46 H 1.08002 * 120.20717 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2877 2.3777 -0.0005 5 6 1.8994 3.6124 0.0000 6 6 3.2863 3.7019 0.0005 7 8 4.1421 4.7458 0.0007 8 6 5.4144 4.3324 0.0007 9 6 5.4585 2.9724 0.0000 10 6 6.6590 2.1230 -0.0007 11 8 6.5534 0.9205 0.1507 12 7 7.8763 2.6767 -0.1690 13 6 8.1500 4.1158 -0.3345 14 6 9.5040 4.1781 -1.0847 15 6 10.2671 2.9856 -0.4497 16 1 10.7238 3.2794 0.4954 17 7 11.2763 2.4644 -1.3748 18 6 12.5270 3.0210 -1.4083 19 1 12.7694 3.8441 -0.7524 20 6 13.4832 2.5274 -2.2852 21 7 14.6854 3.0621 -2.3170 22 14 13.0636 1.1043 -3.4202 23 1 12.5236 1.6332 -4.6985 24 1 14.2884 0.3096 -3.6913 25 1 12.0452 0.2387 -2.7730 26 6 9.1514 1.9462 -0.2113 27 1 9.1385 1.2250 -1.0285 28 6 9.3830 1.2260 1.1185 29 6 4.0508 2.5264 0.0011 30 6 3.4274 1.2829 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2095 2.3148 -0.0005 35 1 1.3007 4.5113 0.0000 36 1 6.2778 4.9813 0.0050 37 1 7.3656 4.5853 -0.9280 38 1 8.2327 4.6006 0.6382 39 1 9.3648 4.0272 -2.1552 40 1 10.0165 5.1197 -0.8883 41 1 11.0587 1.7250 -1.9637 42 1 15.3537 2.7170 -2.9295 43 1 8.5844 0.5029 1.2841 44 1 10.3416 0.7080 1.0892 45 1 9.3880 1.9539 1.9299 46 1 4.0182 0.3788 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986531353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:50 Heat of formation + Delta-G solvation = -26.975173 kcal Electronic energy + Delta-G solvation = -29723.564963 eV Core-core repulsion = 25580.452746 eV Total energy + Delta-G solvation = -4143.112216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.68860 -41.22649 -40.69329 -38.82356 -37.57524 -36.09260 -34.37470 -33.40791 -32.38316 -31.60799 -30.96435 -30.11923 -28.00589 -27.07799 -25.37513 -24.86739 -24.24352 -23.01601 -22.80270 -21.69655 -20.47301 -19.56233 -19.26860 -18.68427 -18.04769 -17.65087 -17.31396 -16.80330 -16.60129 -16.53920 -16.36517 -16.17548 -15.74959 -15.28008 -14.89676 -14.74225 -14.65033 -14.43432 -14.30396 -14.10462 -13.95364 -13.81339 -13.41946 -13.40427 -13.33461 -13.01439 -12.82132 -12.64392 -12.50874 -12.24239 -12.02770 -11.88621 -11.85295 -11.80997 -11.58871 -11.28384 -11.10071 -10.94687 -9.80402 -9.47113 -9.32328 -9.11386 -8.01956 -5.35616 -0.35813 0.20201 0.62380 1.38463 1.39343 1.45721 1.52055 1.79961 2.10082 2.28064 2.47382 2.59211 3.24343 3.30392 3.37677 3.50898 3.60819 3.68408 3.80487 3.87767 3.98262 4.10070 4.12879 4.22877 4.28810 4.32301 4.38495 4.42632 4.43632 4.59077 4.63337 4.67410 4.76284 4.85161 4.85647 4.99082 5.00495 5.12612 5.17023 5.19246 5.22892 5.28024 5.32821 5.41994 5.78272 5.85720 6.21738 6.36582 6.43137 7.03855 7.06592 7.81106 7.98284 9.18684 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.002396 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.019879 B =11681.270594 C =12399.243674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.170 4.170 5 C -0.049 4.049 6 C -0.003 4.003 7 O -0.174 6.174 8 C 0.097 3.903 9 C -0.264 4.264 10 C 0.597 3.403 11 O -0.580 6.580 12 N -0.604 5.604 13 C 0.082 3.918 14 C -0.146 4.146 15 C 0.174 3.826 16 H 0.076 0.924 17 N -0.745 5.745 18 C -0.220 4.220 19 H 0.071 0.929 20 C -0.058 4.058 21 N -0.978 5.978 22 Si 0.943 3.057 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.261 1.261 26 C 0.133 3.867 27 H 0.052 0.948 28 C -0.148 4.148 29 C -0.075 4.075 30 C -0.141 4.141 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.267 0.733 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.362 0.638 42 H 0.257 0.743 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.250 4.791 6.551 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.254 6.254 3 C 0.071 3.929 4 C -0.188 4.188 5 C -0.067 4.067 6 C -0.049 4.049 7 O -0.073 6.073 8 C 0.028 3.972 9 C -0.269 4.269 10 C 0.389 3.611 11 O -0.462 6.462 12 N -0.337 5.337 13 C -0.039 4.039 14 C -0.186 4.186 15 C 0.065 3.935 16 H 0.094 0.906 17 N -0.388 5.388 18 C -0.351 4.351 19 H 0.089 0.911 20 C -0.250 4.250 21 N -0.629 5.629 22 Si 0.771 3.229 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.186 1.186 26 C 0.029 3.971 27 H 0.070 0.930 28 C -0.206 4.206 29 C -0.077 4.077 30 C -0.160 4.160 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.198 0.802 35 H 0.194 0.806 36 H 0.282 0.718 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.195 0.805 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -33.236 4.323 6.700 34.179 hybrid contribution 0.751 -1.524 -0.968 1.956 sum -32.485 2.799 5.732 33.106 Atomic orbital electron populations 1.23448 0.75724 1.05821 1.02943 1.86107 1.24109 1.26475 1.88682 1.18871 0.91151 0.85689 0.97158 1.21412 1.01896 0.89653 1.05844 1.20181 0.87919 0.99762 0.98836 1.19764 0.92804 0.83593 1.08734 1.83907 1.15093 1.33718 1.74557 1.26078 0.85694 0.93891 0.91522 1.20769 0.92089 0.94570 1.19474 1.17043 0.81494 0.86488 0.76101 1.90751 1.86441 1.16483 1.52505 1.48350 1.04563 1.09780 1.70978 1.23088 0.98164 0.80216 1.02462 1.23370 0.94574 1.00655 1.00012 1.21416 0.87010 0.91595 0.93515 0.90602 1.42718 1.10376 1.40272 1.45395 1.18984 0.87608 1.12030 1.16501 0.91133 1.25345 0.95721 1.02067 1.01822 1.69844 1.04990 1.45923 1.42114 0.85594 0.77004 0.80483 0.79778 1.20635 1.22481 1.18579 1.21667 0.83005 0.94329 0.98141 0.92964 1.21978 1.01636 1.00708 0.96322 1.19269 0.91628 0.93939 1.02830 1.19674 0.92464 0.96834 1.07001 0.90868 0.86718 0.90785 0.80228 0.80568 0.71813 0.87364 0.87178 0.91649 0.88591 0.80467 0.93411 0.93046 0.91797 0.91096 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -6.92 10.49 -93.21 -0.98 -7.90 16 3 C 0.12 2.53 6.68 22.50 0.15 2.68 16 4 C -0.17 -2.35 9.01 22.38 0.20 -2.14 16 5 C -0.05 -0.68 10.06 22.34 0.22 -0.46 16 6 C 0.00 -0.06 7.39 22.93 0.17 0.11 16 7 O -0.17 -3.10 10.53 -4.36 -0.05 -3.15 16 8 C 0.10 1.63 10.39 67.31 0.70 2.33 16 9 C -0.26 -6.88 6.25 -18.97 -0.12 -6.99 16 10 C 0.60 19.07 7.63 86.56 0.66 19.73 16 11 O -0.58 -23.41 15.33 -4.20 -0.06 -23.47 16 12 N -0.60 -16.86 3.06 -792.25 -2.43 -19.29 16 13 C 0.08 1.55 5.28 86.86 0.46 2.01 16 14 C -0.15 -3.88 6.77 31.99 0.22 -3.66 16 15 C 0.17 5.94 3.12 46.18 0.14 6.09 16 16 H 0.08 2.60 7.82 -2.38 -0.02 2.58 16 17 N -0.75 -32.97 5.06 -317.32 -1.60 -34.57 16 18 C -0.22 -11.81 10.46 84.03 0.88 -10.93 16 19 H 0.07 4.05 8.06 -2.91 -0.02 4.02 16 20 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 21 N -0.98 -61.01 13.97 21.65 0.30 -60.71 16 22 Si 0.94 45.44 27.74 68.60 1.90 47.35 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 26 C 0.13 4.36 3.22 45.34 0.15 4.51 16 27 H 0.05 1.97 7.69 -2.39 -0.02 1.95 16 28 C -0.15 -4.72 9.10 71.98 0.66 -4.07 16 29 C -0.08 -2.03 6.29 -20.10 -0.13 -2.15 16 30 C -0.14 -4.02 9.83 22.49 0.22 -3.80 16 31 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 34 H 0.18 1.00 6.27 -2.91 -0.02 0.98 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.27 2.13 4.68 -2.91 -0.01 2.12 16 37 H 0.11 1.38 5.34 -2.39 -0.01 1.37 16 38 H 0.11 1.41 8.03 -2.39 -0.02 1.39 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.36 16.18 5.38 -92.71 -0.50 15.68 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.05 1.77 6.84 -2.39 -0.02 1.76 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.11 3.80 7.57 -2.91 -0.02 3.78 16 Total: -1.00 -80.40 373.78 3.72 -76.68 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.47 Total: 23.43 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.16 Total: 1.64 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.73 Total: -114.57 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.09 Total: -34.52 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.35 kcal Total: -80.40 3.72 -76.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986531353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.701 kcal (2) G-P(sol) polarization free energy of solvation -80.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds