Wall clock time and date at job start Wed Apr 1 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35959 * 117.00030 * 2 1 4 4 C 1.39129 * 119.96161 * 0.02562 * 3 2 1 5 5 C 1.37787 * 120.60328 * 180.02562 * 4 3 2 6 6 C 1.38980 * 120.04812 * 0.03291 * 5 4 3 7 7 O 1.34982 * 133.03537 * 179.97438 * 6 5 4 8 8 C 1.33787 * 111.34753 * 180.02562 * 7 6 5 9 9 C 1.36071 * 109.84909 * 359.97438 * 8 7 6 10 10 C 1.47072 * 127.13664 * 179.97438 * 9 8 7 11 11 O 1.21643 * 120.00154 * 172.94875 * 10 9 8 12 12 N 1.34780 * 119.99548 * 352.94609 * 10 9 8 13 13 C 1.47425 * 125.65196 * 354.33317 * 12 10 9 14 14 C 1.55386 * 104.87369 * 204.16488 * 13 12 10 15 15 C 1.55153 * 101.36819 * 323.02128 * 14 13 12 16 16 H 1.09002 * 110.72096 * 153.94710 * 15 14 13 17 17 N 1.46495 * 110.71950 * 277.04051 * 15 14 13 18 18 C 1.36943 * 119.99888 * 271.15705 * 17 15 14 19 19 H 1.07997 * 120.00029 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99773 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00109 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47148 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47353 * 300.00508 * 22 20 18 25 25 H 1.48501 * 109.47188 * 60.00213 * 22 20 18 26 26 C 1.47025 * 125.64370 * 174.37719 * 12 10 9 27 27 H 1.08995 * 109.88198 * 59.48658 * 26 12 10 28 28 C 1.53003 * 109.88264 * 298.32133 * 26 12 10 29 29 C 1.40218 * 119.34735 * 0.25258 * 6 5 4 30 30 C 1.38296 * 119.95904 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47625 * 59.99857 * 1 2 3 32 32 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46961 * 299.99578 * 1 2 3 34 34 H 1.08004 * 119.69331 * 0.05280 * 4 3 2 35 35 H 1.08001 * 119.97710 * 179.97438 * 5 4 3 36 36 H 1.07998 * 125.07559 * 180.02562 * 8 7 6 37 37 H 1.08989 * 110.36594 * 323.00473 * 13 12 10 38 38 H 1.09004 * 110.36202 * 85.32703 * 13 12 10 39 39 H 1.08999 * 111.18747 * 204.97897 * 14 13 12 40 40 H 1.09004 * 111.01629 * 80.98733 * 14 13 12 41 41 H 0.96999 * 120.00453 * 91.15480 * 17 15 14 42 42 H 0.97004 * 119.99893 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.46900 * 302.19329 * 28 26 12 44 44 H 1.09004 * 109.47066 * 62.19495 * 28 26 12 45 45 H 1.08994 * 109.47291 * 182.19298 * 28 26 12 46 46 H 1.08003 * 120.20980 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2877 2.3777 0.0005 5 6 1.8995 3.6123 0.0000 6 6 3.2864 3.7018 -0.0018 7 8 4.1422 4.7456 -0.0031 8 6 5.4146 4.3322 -0.0051 9 6 5.4585 2.9723 -0.0047 10 6 6.6590 2.1227 -0.0070 11 8 6.5519 0.9180 0.1230 12 7 7.8779 2.6790 -0.1532 13 6 8.1451 4.1009 -0.4363 14 6 9.5450 4.1172 -1.1105 15 6 10.2777 3.0005 -0.3209 16 1 11.0743 2.5622 -0.9221 17 7 10.8098 3.5215 0.9406 18 6 12.0649 4.0678 0.9807 19 1 12.6622 4.1150 0.0822 20 6 12.5688 4.5619 2.1761 21 7 11.8406 4.5049 3.2709 22 14 14.2806 5.3078 2.2306 23 1 14.5806 5.7576 3.6136 24 1 15.2779 4.2893 1.8145 25 1 14.3442 6.4690 1.3072 26 6 9.1613 1.9680 -0.0577 27 1 9.2036 1.1772 -0.8066 28 6 9.3231 1.3722 1.3422 29 6 4.0508 2.5263 -0.0084 30 6 3.4274 1.2828 -0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2095 2.3147 0.0018 35 1 1.3008 4.5112 0.0000 36 1 6.2779 4.9811 -0.0061 37 1 7.3925 4.5003 -1.1160 38 1 8.1638 4.6751 0.4900 39 1 10.0372 5.0800 -0.9733 40 1 9.4724 3.8645 -2.1684 41 1 10.2731 3.4795 1.7476 42 1 12.1930 4.8499 4.1063 43 1 9.2600 2.1673 2.0850 44 1 8.5317 0.6443 1.5210 45 1 10.2928 0.8804 1.4179 46 1 4.0182 0.3787 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986531355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:55 Heat of formation + Delta-G solvation = -5.316822 kcal Electronic energy + Delta-G solvation = -29985.927526 eV Core-core repulsion = 25843.754486 eV Total energy + Delta-G solvation = -4142.173040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72275 -39.95011 -39.78728 -37.40241 -36.71180 -34.13257 -33.10334 -31.63390 -30.88605 -30.41397 -29.48960 -28.62489 -27.38785 -25.46238 -24.12373 -23.75230 -23.32996 -22.14927 -21.60076 -19.85103 -18.83928 -18.37044 -17.76884 -17.30711 -17.04223 -16.53035 -16.09177 -15.87663 -15.68139 -15.60691 -14.83775 -14.60192 -14.09870 -13.88816 -13.75852 -13.64250 -13.41530 -13.23968 -13.16490 -12.72011 -12.69689 -12.62951 -12.31205 -12.06651 -11.78375 -11.33136 -11.17095 -11.03701 -11.01011 -10.95831 -10.77911 -10.67370 -10.33363 -10.24620 -10.09405 -9.68901 -9.62652 -8.98914 -8.56779 -8.39355 -8.17318 -7.06902 -5.84950 -3.14897 0.56256 1.12380 1.65431 2.47729 2.95342 3.17536 3.25377 3.39094 3.44383 3.45210 3.61062 4.26434 4.38841 4.49821 4.51923 4.72924 4.82048 4.82424 4.84375 4.90820 4.94571 5.13012 5.14982 5.27445 5.37090 5.53101 5.54843 5.58925 5.66197 5.67909 5.77772 5.91929 5.92298 6.00175 6.08488 6.12023 6.21632 6.27115 6.39234 6.47337 6.58393 6.67153 6.77864 6.85046 6.99351 7.13546 7.63022 7.77280 8.33094 8.39607 9.44932 9.99585 10.34612 11.37041 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.002383 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.256471 B =11746.003557 C =12201.443159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.112 3.888 4 C -0.178 4.178 5 C -0.065 4.065 6 C 0.011 3.989 7 O -0.183 6.183 8 C 0.064 3.936 9 C -0.224 4.224 10 C 0.600 3.400 11 O -0.538 6.538 12 N -0.604 5.604 13 C 0.089 3.911 14 C -0.157 4.157 15 C 0.171 3.829 16 H 0.070 0.930 17 N -0.714 5.714 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.292 1.292 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.130 3.870 27 H 0.073 0.927 28 C -0.150 4.150 29 C -0.051 4.051 30 C -0.097 4.097 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.388 0.612 42 H 0.257 0.743 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.136 -1.884 -8.921 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.067 3.933 4 C -0.197 4.197 5 C -0.083 4.083 6 C -0.035 4.035 7 O -0.082 6.082 8 C -0.004 4.004 9 C -0.229 4.229 10 C 0.389 3.611 11 O -0.416 6.416 12 N -0.337 5.337 13 C -0.034 4.034 14 C -0.198 4.198 15 C 0.059 3.941 16 H 0.088 0.912 17 N -0.356 5.356 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.212 1.212 25 H -0.212 1.212 26 C 0.027 3.973 27 H 0.091 0.909 28 C -0.208 4.208 29 C -0.053 4.053 30 C -0.116 4.116 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.244 0.756 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.225 0.775 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.102 -2.434 -8.819 23.920 hybrid contribution 0.636 0.668 0.400 1.005 sum -21.466 -1.766 -8.419 23.125 Atomic orbital electron populations 1.23073 0.78422 1.04083 1.01267 1.86120 1.21246 1.26332 1.88994 1.18715 0.91755 0.84318 0.98496 1.20988 1.00157 0.90972 1.07567 1.19639 0.88788 0.98240 1.01642 1.19477 0.91875 0.84526 1.07585 1.83884 1.15082 1.34121 1.75153 1.25435 0.84923 0.95036 0.95052 1.20947 0.93053 0.93309 1.15562 1.16621 0.80786 0.86654 0.77002 1.90761 1.85923 1.14097 1.50850 1.48450 1.05195 1.10298 1.69790 1.22725 0.98372 0.82313 0.99971 1.23598 0.94446 1.03370 0.98434 1.21203 0.92450 0.90825 0.89587 0.91173 1.42575 1.16667 1.71148 1.05260 1.19182 0.91868 1.31878 0.94686 0.91056 1.24749 0.98439 1.01738 0.95643 1.69648 1.37117 1.51623 0.99378 0.86267 0.84255 0.79038 0.76570 1.21754 1.21230 1.21250 1.22003 0.81911 0.95024 0.98400 0.90873 1.21926 1.01831 1.01044 0.95994 1.19065 0.91079 0.93123 1.01998 1.19760 0.91067 0.97624 1.03109 0.92636 0.88156 0.92609 0.84190 0.84485 0.75589 0.91331 0.90512 0.89116 0.91803 0.77482 0.93336 0.91517 0.92810 0.91248 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.44 10.49 -19.61 -0.21 -3.65 16 3 C 0.11 1.34 6.68 -39.23 -0.26 1.07 16 4 C -0.18 -1.67 9.01 -39.42 -0.36 -2.03 16 5 C -0.06 -0.64 10.06 -39.47 -0.40 -1.04 16 6 C 0.01 0.15 7.39 -38.56 -0.28 -0.14 16 7 O -0.18 -2.27 10.53 5.17 0.05 -2.21 16 8 C 0.06 0.78 10.37 29.95 0.31 1.09 16 9 C -0.22 -3.38 6.23 -103.25 -0.64 -4.02 16 10 C 0.60 10.41 7.58 -12.68 -0.10 10.32 16 11 O -0.54 -10.84 15.59 5.24 0.08 -10.76 16 12 N -0.60 -9.78 3.07 -164.10 -0.50 -10.29 16 13 C 0.09 1.23 5.11 -2.27 -0.01 1.22 16 14 C -0.16 -2.37 6.81 -24.33 -0.17 -2.54 16 15 C 0.17 3.12 3.46 -66.10 -0.23 2.89 16 16 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 17 N -0.71 -16.28 4.61 -51.65 -0.24 -16.52 16 18 C -0.25 -6.29 9.97 -15.06 -0.15 -6.44 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 22 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 26 C 0.13 2.25 3.40 -66.95 -0.23 2.03 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 C -0.15 -2.83 8.47 37.16 0.31 -2.51 16 29 C -0.05 -0.75 6.29 -104.98 -0.66 -1.41 16 30 C -0.10 -1.40 9.83 -39.24 -0.39 -1.78 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.27 7.65 -51.93 -0.40 -0.12 16 34 H 0.14 0.85 6.27 -52.48 -0.33 0.52 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.23 2.17 4.76 -52.49 -0.25 1.92 16 37 H 0.07 0.75 5.98 -51.94 -0.31 0.44 16 38 H 0.08 1.11 7.75 -51.93 -0.40 0.71 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.39 9.57 5.58 -40.82 -0.23 9.34 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.07 1.38 6.21 -51.93 -0.32 1.06 16 44 H 0.05 1.02 7.10 -51.93 -0.37 0.65 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.15 2.29 7.56 -52.48 -0.40 1.89 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -32.26 373.70 -7.73 -39.99 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.91 Total: 9.98 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.35 Total: -2.50 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.02 Total: -52.89 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.07 Total: -16.63 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.26 -7.73 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986531355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.673 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds