Wall clock time and date at job start Wed Apr 1 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35562 * 116.99592 * 2 1 4 4 C 1.46687 * 127.03695 * 90.00359 * 3 2 1 5 5 C 1.39580 * 134.09282 * 359.97438 * 4 3 2 6 6 C 1.36667 * 119.73539 * 179.97438 * 5 4 3 7 7 C 1.38803 * 120.41166 * 0.02808 * 6 5 4 8 8 C 1.37805 * 120.71775 * 359.97438 * 7 6 5 9 9 C 1.39052 * 119.86407 * 359.97438 * 8 7 6 10 10 O 1.34754 * 133.06524 * 179.97438 * 9 8 7 11 11 C 1.35220 * 110.96504 * 180.02562 * 10 9 8 12 12 C 1.46192 * 125.23099 * 180.02562 * 11 10 9 13 13 O 1.21753 * 119.99863 * 179.97438 * 12 11 10 14 14 N 1.34783 * 120.00107 * 359.97201 * 12 11 10 15 15 C 1.47426 * 125.64465 * 0.02648 * 14 12 11 16 16 C 1.54913 * 104.82914 * 155.83384 * 15 14 12 17 17 C 1.55157 * 101.58236 * 37.00829 * 16 15 14 18 18 H 1.09003 * 110.72204 * 82.85957 * 17 16 15 19 19 N 1.46496 * 110.72359 * 206.13333 * 17 16 15 20 20 C 1.36936 * 120.00305 * 273.54921 * 19 17 16 21 21 H 1.08005 * 119.99445 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00231 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99955 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47193 * 59.99935 * 24 22 20 26 26 H 1.48501 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47049 * 300.00065 * 24 22 20 28 28 C 1.47015 * 125.64881 * 179.71815 * 14 12 11 29 29 H 1.08999 * 109.88090 * 300.51393 * 28 14 12 30 30 C 1.52997 * 109.88169 * 61.67832 * 28 14 12 31 31 H 1.09002 * 109.46942 * 299.99803 * 1 2 3 32 32 H 1.08995 * 109.47662 * 59.99947 * 1 2 3 33 33 H 1.09005 * 109.47148 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.12987 * 0.04180 * 5 4 3 35 35 H 1.07999 * 119.79631 * 180.02562 * 6 5 4 36 36 H 1.08002 * 119.63588 * 180.26354 * 7 6 5 37 37 H 1.08002 * 120.06838 * 179.97438 * 8 7 6 38 38 H 1.08994 * 110.36834 * 274.67281 * 15 14 12 39 39 H 1.09000 * 110.36721 * 36.99883 * 15 14 12 40 40 H 1.08997 * 111.00305 * 155.08127 * 16 15 14 41 41 H 1.09004 * 111.00229 * 278.89722 * 16 15 14 42 42 H 0.97003 * 119.99823 * 93.53716 * 19 17 16 43 43 H 0.97006 * 120.00015 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.47167 * 58.55233 * 30 28 14 45 45 H 1.09007 * 109.46593 * 178.54468 * 30 28 14 46 46 H 1.08996 * 109.47096 * 298.54409 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2079 0.0000 4 6 2.4455 1.9951 1.1709 5 6 2.3474 1.8035 2.5500 6 6 2.8329 2.7548 3.4028 7 6 3.4216 3.9094 2.9057 8 6 3.5277 4.1169 1.5475 9 6 3.0416 3.1620 0.6612 10 8 3.0046 3.0895 -0.6839 11 6 2.4191 1.9404 -1.0905 12 6 2.2173 1.5435 -2.4829 13 8 1.6776 0.4832 -2.7416 14 7 2.6288 2.3513 -3.4804 15 6 3.2936 3.6561 -3.3103 16 6 4.0901 3.8691 -4.6219 17 6 3.1251 3.2623 -5.6744 18 1 2.3643 3.9875 -5.9635 19 7 3.8665 2.7916 -6.8470 20 6 4.1556 3.6578 -7.8674 21 1 3.8367 4.6880 -7.8079 22 6 4.8586 3.2119 -8.9781 23 7 5.2476 1.9567 -9.0504 24 14 5.2524 4.3934 -10.3704 25 1 6.0764 5.5141 -9.8505 26 1 6.0045 3.6758 -11.4309 27 1 3.9887 4.9295 -10.9370 28 6 2.4947 2.0742 -4.9179 29 1 3.0197 1.1524 -5.1683 30 6 1.0153 1.9509 -5.2883 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8908 0.9066 2.9416 35 1 2.7579 2.6074 4.4700 36 1 3.8049 4.6510 3.5910 37 1 3.9874 5.0192 1.1722 38 1 2.5530 4.4456 -3.1838 39 1 3.9700 3.6288 -2.4560 40 1 4.2565 4.9298 -4.8100 41 1 5.0347 3.3257 -4.5979 42 1 4.1527 1.8663 -6.9005 43 1 5.7392 1.6451 -9.8264 44 1 0.4976 2.8743 -5.0287 45 1 0.9227 1.7713 -6.3594 46 1 0.5718 1.1194 -4.7407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986670514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:14 Heat of formation + Delta-G solvation = -13.263527 kcal Electronic energy + Delta-G solvation = -30253.784723 eV Core-core repulsion = 26111.267088 eV Total energy + Delta-G solvation = -4142.517635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.78397 -39.93264 -38.56736 -38.19294 -37.33649 -34.16540 -32.39551 -31.83466 -30.98304 -30.70127 -29.93081 -28.91545 -27.21382 -25.23938 -24.69244 -23.16330 -22.99034 -22.34668 -21.41013 -20.28551 -19.51837 -18.34070 -17.80186 -17.24410 -16.89660 -16.63126 -16.05205 -15.79320 -15.38436 -15.16340 -15.02913 -14.74465 -14.62234 -14.15658 -14.00184 -13.69823 -13.40782 -13.27100 -12.93017 -12.82576 -12.62791 -12.42951 -12.20355 -12.04057 -11.90243 -11.62552 -11.43706 -11.18837 -11.05477 -10.83891 -10.60586 -10.34697 -10.29413 -10.21201 -10.09946 -9.91945 -9.72918 -9.02928 -8.95902 -8.65215 -8.32838 -7.05252 -5.82638 -3.13464 0.23141 0.96833 1.44369 2.18307 2.98133 3.01085 3.27121 3.40810 3.45361 3.46610 3.47573 4.07487 4.39706 4.53416 4.54663 4.67271 4.85689 4.89713 4.98473 5.02254 5.07640 5.19767 5.22642 5.26490 5.36175 5.47302 5.48711 5.58622 5.60684 5.67003 5.75407 5.82308 5.89973 5.94973 6.03771 6.05072 6.12216 6.18108 6.28685 6.41304 6.54908 6.56662 6.61630 6.73194 6.89976 7.17043 7.55401 7.64005 8.08251 8.34431 9.45938 9.99755 10.34666 11.39412 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.002582 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.416960 B =10842.241005 C =11943.123373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.290 6.290 3 C 0.089 3.911 4 C -0.156 4.156 5 C -0.054 4.054 6 C -0.140 4.140 7 C -0.082 4.082 8 C -0.109 4.109 9 C 0.075 3.925 10 O -0.167 6.167 11 C -0.029 4.029 12 C 0.605 3.395 13 O -0.508 6.508 14 N -0.595 5.595 15 C 0.097 3.903 16 C -0.155 4.155 17 C 0.178 3.822 18 H 0.067 0.933 19 N -0.714 5.714 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.128 3.872 29 H 0.083 0.917 30 C -0.155 4.155 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 3.257 25.998 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.041 3.959 4 C -0.158 4.158 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.100 4.100 8 C -0.128 4.128 9 C 0.026 3.974 10 O -0.069 6.069 11 C -0.080 4.080 12 C 0.392 3.608 13 O -0.385 6.385 14 N -0.328 5.328 15 C -0.026 4.026 16 C -0.196 4.196 17 C 0.066 3.934 18 H 0.085 0.915 19 N -0.355 5.355 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.025 3.975 29 H 0.101 0.899 30 C -0.213 4.213 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.026 2.780 25.526 26.902 hybrid contribution 0.303 0.449 -0.643 0.840 sum -7.723 3.229 24.884 26.254 Atomic orbital electron populations 1.23056 0.78008 1.03749 1.00706 1.85959 1.20361 1.21016 1.93234 1.19373 0.99760 0.87681 0.89125 1.20000 1.05582 0.95659 0.94510 1.20338 0.97600 0.99191 0.90114 1.20817 1.00545 0.94370 1.00088 1.21032 0.97637 0.97592 0.93777 1.20046 1.03087 0.98511 0.91125 1.19631 0.99938 0.96221 0.81572 1.84344 1.66278 1.35950 1.20300 1.22321 1.04091 0.86747 0.94838 1.16055 0.80102 0.83712 0.80973 1.90914 1.43762 1.22042 1.81818 1.48462 1.57489 1.20239 1.06582 1.22553 0.96091 0.83990 0.99991 1.23598 0.99985 1.02377 0.93683 1.21249 0.92657 0.92319 0.87205 0.91538 1.42340 1.64856 1.11409 1.16883 1.19144 1.29775 0.92444 0.96201 0.91023 1.24767 1.00931 0.96291 0.98599 1.69654 1.43191 1.14254 1.30610 0.86252 0.77973 0.79899 0.81926 1.21192 1.21676 1.21182 1.22004 0.97246 1.00601 0.77689 0.89940 1.22060 0.94985 1.01742 1.02523 0.93725 0.92841 0.88234 0.85229 0.85030 0.84435 0.84395 0.91414 0.90388 0.90351 0.90510 0.77927 0.93285 0.92975 0.90796 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.13 101.05 1.12 1.54 16 2 O -0.29 -4.16 9.75 -30.34 -0.30 -4.46 16 3 C 0.09 1.28 6.52 -36.76 -0.24 1.04 16 4 C -0.16 -1.90 6.38 -105.10 -0.67 -2.57 16 5 C -0.05 -0.50 10.05 -39.65 -0.40 -0.90 16 6 C -0.14 -0.99 9.98 -39.94 -0.40 -1.39 16 7 C -0.08 -0.56 10.01 -39.53 -0.40 -0.96 16 8 C -0.11 -0.95 10.07 -39.44 -0.40 -1.35 16 9 C 0.07 0.88 7.39 -38.39 -0.28 0.60 16 10 O -0.17 -2.26 7.68 1.87 0.01 -2.25 16 11 C -0.03 -0.45 6.89 -36.98 -0.25 -0.70 16 12 C 0.60 10.35 7.60 -13.06 -0.10 10.25 16 13 O -0.51 -9.76 15.22 -6.82 -0.10 -9.86 16 14 N -0.60 -9.81 3.07 -164.72 -0.50 -10.32 16 15 C 0.10 1.39 6.14 -2.53 -0.02 1.38 16 16 C -0.16 -2.60 6.76 -24.58 -0.17 -2.76 16 17 C 0.18 3.39 3.11 -66.10 -0.21 3.19 16 18 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 19 N -0.71 -17.24 5.25 -51.66 -0.27 -17.51 16 20 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 21 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 24 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.13 2.28 3.20 -66.96 -0.21 2.07 16 29 H 0.08 1.64 7.68 -51.93 -0.40 1.24 16 30 C -0.16 -2.56 9.10 37.16 0.34 -2.22 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.39 10.08 7.50 -40.82 -0.31 9.77 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.05 6.87 -51.93 -0.36 0.70 16 LS Contribution 384.31 15.07 5.79 5.79 Total: -1.00 -32.06 384.31 -8.60 -40.67 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.41 Total: 7.77 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.52 Total: 0.18 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.05 Total: -54.67 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.39 Total: -16.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.06 -8.60 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986670514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.403 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds