Wall clock time and date at job start Wed Apr 1 2020 02:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35562 * 116.99592 * 2 1 4 4 C 1.46687 * 127.03695 * 90.00359 * 3 2 1 5 5 C 1.39580 * 134.09282 * 359.97438 * 4 3 2 6 6 C 1.36667 * 119.73539 * 179.97438 * 5 4 3 7 7 C 1.38803 * 120.41166 * 0.02808 * 6 5 4 8 8 C 1.37805 * 120.71775 * 359.97438 * 7 6 5 9 9 C 1.39052 * 119.86407 * 359.97438 * 8 7 6 10 10 O 1.34754 * 133.06524 * 179.97438 * 9 8 7 11 11 C 1.35220 * 110.96504 * 180.02562 * 10 9 8 12 12 C 1.46192 * 125.23099 * 180.02562 * 11 10 9 13 13 O 1.21753 * 119.99863 * 179.97438 * 12 11 10 14 14 N 1.34783 * 120.00107 * 359.97201 * 12 11 10 15 15 C 1.47426 * 125.64465 * 0.02648 * 14 12 11 16 16 C 1.54913 * 104.82914 * 155.83384 * 15 14 12 17 17 C 1.55157 * 101.58236 * 37.00829 * 16 15 14 18 18 H 1.09003 * 110.72204 * 82.85957 * 17 16 15 19 19 N 1.46496 * 110.72359 * 206.13333 * 17 16 15 20 20 C 1.36936 * 120.00305 * 273.54921 * 19 17 16 21 21 H 1.08005 * 119.99445 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00231 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99955 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47193 * 59.99935 * 24 22 20 26 26 H 1.48501 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47049 * 300.00065 * 24 22 20 28 28 C 1.47015 * 125.64881 * 179.71815 * 14 12 11 29 29 H 1.08999 * 109.88090 * 300.51393 * 28 14 12 30 30 C 1.52997 * 109.88169 * 61.67832 * 28 14 12 31 31 H 1.09002 * 109.46942 * 299.99803 * 1 2 3 32 32 H 1.08995 * 109.47662 * 59.99947 * 1 2 3 33 33 H 1.09005 * 109.47148 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.12987 * 0.04180 * 5 4 3 35 35 H 1.07999 * 119.79631 * 180.02562 * 6 5 4 36 36 H 1.08002 * 119.63588 * 180.26354 * 7 6 5 37 37 H 1.08002 * 120.06838 * 179.97438 * 8 7 6 38 38 H 1.08994 * 110.36834 * 274.67281 * 15 14 12 39 39 H 1.09000 * 110.36721 * 36.99883 * 15 14 12 40 40 H 1.08997 * 111.00305 * 155.08127 * 16 15 14 41 41 H 1.09004 * 111.00229 * 278.89722 * 16 15 14 42 42 H 0.97003 * 119.99823 * 93.53716 * 19 17 16 43 43 H 0.97006 * 120.00015 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.47167 * 58.55233 * 30 28 14 45 45 H 1.09007 * 109.46593 * 178.54468 * 30 28 14 46 46 H 1.08996 * 109.47096 * 298.54409 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2079 0.0000 4 6 2.4455 1.9951 1.1709 5 6 2.3474 1.8035 2.5500 6 6 2.8329 2.7548 3.4028 7 6 3.4216 3.9094 2.9057 8 6 3.5277 4.1169 1.5475 9 6 3.0416 3.1620 0.6612 10 8 3.0046 3.0895 -0.6839 11 6 2.4191 1.9404 -1.0905 12 6 2.2173 1.5435 -2.4829 13 8 1.6776 0.4832 -2.7416 14 7 2.6288 2.3513 -3.4804 15 6 3.2936 3.6561 -3.3103 16 6 4.0901 3.8691 -4.6219 17 6 3.1251 3.2623 -5.6744 18 1 2.3643 3.9875 -5.9635 19 7 3.8665 2.7916 -6.8470 20 6 4.1556 3.6578 -7.8674 21 1 3.8367 4.6880 -7.8079 22 6 4.8586 3.2119 -8.9781 23 7 5.2476 1.9567 -9.0504 24 14 5.2524 4.3934 -10.3704 25 1 6.0764 5.5141 -9.8505 26 1 6.0045 3.6758 -11.4309 27 1 3.9887 4.9295 -10.9370 28 6 2.4947 2.0742 -4.9179 29 1 3.0197 1.1524 -5.1683 30 6 1.0153 1.9509 -5.2883 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8908 0.9066 2.9416 35 1 2.7579 2.6074 4.4700 36 1 3.8049 4.6510 3.5910 37 1 3.9874 5.0192 1.1722 38 1 2.5530 4.4456 -3.1838 39 1 3.9700 3.6288 -2.4560 40 1 4.2565 4.9298 -4.8100 41 1 5.0347 3.3257 -4.5979 42 1 4.1527 1.8663 -6.9005 43 1 5.7392 1.6451 -9.8264 44 1 0.4976 2.8743 -5.0287 45 1 0.9227 1.7713 -6.3594 46 1 0.5718 1.1194 -4.7407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986670514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:13 Heat of formation + Delta-G solvation = -32.587364 kcal Electronic energy + Delta-G solvation = -30254.622667 eV Core-core repulsion = 26111.267088 eV Total energy + Delta-G solvation = -4143.355579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.68398 -41.25575 -39.62059 -38.97737 -38.65156 -35.96707 -33.52923 -33.21708 -32.41321 -31.50855 -31.17942 -30.19667 -28.12850 -26.89874 -25.76514 -24.78188 -23.92336 -23.40629 -22.38259 -21.69952 -20.77919 -19.31515 -19.12232 -18.78116 -17.95131 -17.60243 -17.44722 -16.79220 -16.55036 -16.39638 -16.06802 -15.86314 -15.65508 -15.44337 -15.37097 -14.91375 -14.77312 -14.62042 -14.29556 -14.01366 -13.71821 -13.39543 -13.27740 -13.16159 -13.03045 -12.91560 -12.83291 -12.67150 -12.57494 -12.22829 -12.15024 -12.09487 -11.74387 -11.65068 -11.46376 -11.07309 -11.05718 -10.90538 -9.93624 -9.73438 -9.26789 -9.04492 -7.93649 -5.24303 -0.67953 0.27235 0.59835 1.18950 1.49818 1.52698 1.58532 1.76896 1.81542 2.44387 2.57524 2.67192 3.07917 3.38071 3.56422 3.63829 3.70234 3.75813 3.91157 3.98312 4.11861 4.19876 4.23339 4.26832 4.30718 4.35245 4.37497 4.42490 4.45149 4.52610 4.61194 4.67426 4.71420 4.86929 4.93732 4.98443 5.13375 5.15389 5.17062 5.22416 5.32546 5.38687 5.44153 5.49506 5.54407 5.93457 6.19942 6.24976 6.27495 6.77760 7.32653 8.03231 8.27839 9.29662 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.002582 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.416960 B =10842.241005 C =11943.123373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.093 3.907 4 C -0.180 4.180 5 C -0.064 4.064 6 C -0.130 4.130 7 C -0.065 4.065 8 C -0.119 4.119 9 C 0.057 3.943 10 O -0.173 6.173 11 C -0.063 4.063 12 C 0.603 3.397 13 O -0.541 6.541 14 N -0.598 5.598 15 C 0.107 3.893 16 C -0.146 4.146 17 C 0.174 3.826 18 H 0.076 0.924 19 N -0.728 5.728 20 C -0.238 4.238 21 H 0.085 0.915 22 C -0.075 4.075 23 N -0.972 5.972 24 Si 0.975 3.025 25 H -0.275 1.275 26 H -0.301 1.301 27 H -0.277 1.277 28 C 0.133 3.867 29 H 0.053 0.947 30 C -0.144 4.144 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 5.978 29.443 31.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.044 3.956 4 C -0.182 4.182 5 C -0.082 4.082 6 C -0.148 4.148 7 C -0.083 4.083 8 C -0.137 4.137 9 C 0.009 3.991 10 O -0.075 6.075 11 C -0.113 4.113 12 C 0.392 3.608 13 O -0.421 6.421 14 N -0.329 5.329 15 C -0.015 4.015 16 C -0.186 4.186 17 C 0.064 3.936 18 H 0.094 0.906 19 N -0.367 5.367 20 C -0.369 4.369 21 H 0.102 0.898 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.803 3.197 25 H -0.201 1.201 26 H -0.227 1.227 27 H -0.203 1.203 28 C 0.030 3.970 29 H 0.071 0.929 30 C -0.202 4.202 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.185 0.815 36 H 0.195 0.805 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.401 5.558 29.025 30.723 hybrid contribution 0.376 -0.384 -1.418 1.516 sum -8.025 5.174 27.607 29.212 Atomic orbital electron populations 1.23227 0.76196 1.05176 1.01008 1.85882 1.22161 1.21573 1.93464 1.19756 0.98534 0.87178 0.90122 1.20140 1.07116 0.95688 0.95213 1.20638 0.98016 1.00496 0.89083 1.21293 0.98502 0.93403 1.01566 1.21593 0.95342 0.97892 0.93427 1.20487 1.03038 0.98616 0.91535 1.20177 1.00667 0.97236 0.80989 1.84252 1.66593 1.35147 1.21520 1.21817 1.07163 0.88483 0.93834 1.16301 0.79399 0.83217 0.81853 1.90874 1.45289 1.23317 1.82662 1.48462 1.57731 1.20996 1.05739 1.22590 0.96437 0.83572 0.98914 1.23416 0.98598 1.02701 0.93921 1.21416 0.92979 0.92852 0.86317 0.90580 1.42505 1.65530 1.10565 1.18141 1.19578 1.27972 0.93096 0.96259 0.89759 1.25591 1.01979 0.97803 1.01381 1.69831 1.44957 1.16278 1.31125 0.85198 0.77844 0.77909 0.78706 1.20124 1.22731 1.20252 1.21753 0.97616 0.98818 0.78855 0.92924 1.21950 0.94128 1.02369 1.01790 0.91435 0.94425 0.86332 0.84067 0.81528 0.80483 0.82398 0.88945 0.89302 0.88707 0.92583 0.79644 0.94094 0.91161 0.91590 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 11.13 113.37 1.26 2.05 16 2 O -0.31 -9.25 9.75 -77.25 -0.75 -10.00 16 3 C 0.09 2.71 6.52 24.10 0.16 2.86 16 4 C -0.18 -4.20 6.38 -20.17 -0.13 -4.33 16 5 C -0.06 -1.03 10.05 22.23 0.22 -0.80 16 6 C -0.13 -1.26 9.98 22.04 0.22 -1.04 16 7 C -0.06 -0.57 10.01 22.30 0.22 -0.35 16 8 C -0.12 -1.68 10.07 22.36 0.23 -1.45 16 9 C 0.06 1.27 7.39 23.04 0.17 1.44 16 10 O -0.17 -4.61 7.68 -16.24 -0.12 -4.74 16 11 C -0.06 -1.95 6.89 23.96 0.17 -1.79 16 12 C 0.60 21.51 7.60 86.31 0.66 22.16 16 13 O -0.54 -22.02 15.22 6.91 0.11 -21.91 16 14 N -0.60 -20.11 3.07 -793.26 -2.43 -22.54 16 15 C 0.11 2.99 6.14 86.86 0.53 3.52 16 16 C -0.15 -4.80 6.76 31.99 0.22 -4.58 16 17 C 0.17 6.69 3.11 46.18 0.14 6.84 16 18 H 0.08 2.81 7.84 -2.39 -0.02 2.79 16 19 N -0.73 -36.03 5.25 -317.34 -1.67 -37.69 16 20 C -0.24 -12.70 9.98 84.03 0.84 -11.86 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 24 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 28 C 0.13 4.94 3.20 45.34 0.15 5.09 16 29 H 0.05 2.26 7.68 -2.39 -0.02 2.24 16 30 C -0.14 -4.89 9.10 71.98 0.66 -4.23 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 36 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 37 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 2.35 6.17 -2.39 -0.01 2.34 16 40 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.37 20.37 7.50 -92.71 -0.70 19.67 16 43 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 44 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.05 1.96 6.87 -2.39 -0.02 1.94 16 Total: -1.00 -73.08 384.31 3.93 -69.15 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.31 Total: 29.86 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.17 Total: 9.74 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -3.81 Total: -119.45 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.77 Total: -36.65 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.08 3.93 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986670514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.566 kcal (2) G-P(sol) polarization free energy of solvation -73.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds