Wall clock time and date at job start Wed Apr 1 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35956 * 117.00039 * 2 1 4 4 C 1.38331 * 120.05828 * 359.97438 * 3 2 1 5 5 C 1.38607 * 120.58702 * 180.02562 * 4 3 2 6 6 C 1.37866 * 120.25114 * 359.97438 * 5 4 3 7 7 C 1.39190 * 119.73090 * 0.03930 * 6 5 4 8 8 C 1.47657 * 134.22439 * 179.97438 * 7 6 5 9 9 C 1.47077 * 127.13970 * 359.97438 * 8 7 6 10 10 O 1.21649 * 119.99644 * 336.09552 * 9 8 7 11 11 N 1.34777 * 120.00045 * 156.08955 * 9 8 7 12 12 C 1.47420 * 125.64869 * 354.54329 * 11 9 8 13 13 C 1.54910 * 104.83435 * 204.07784 * 12 11 9 14 14 H 1.09003 * 111.03514 * 81.07309 * 13 12 11 15 15 N 1.46495 * 111.00749 * 204.91693 * 13 12 11 16 16 C 1.36933 * 119.99927 * 267.47017 * 15 13 12 17 17 H 1.08004 * 120.00434 * 359.72169 * 16 15 13 18 18 C 1.38814 * 120.00095 * 179.72728 * 16 15 13 19 19 N 1.31611 * 119.99865 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99989 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47288 * 89.99880 * 20 18 16 22 22 H 1.48500 * 109.47047 * 209.99857 * 20 18 16 23 23 H 1.48501 * 109.47129 * 329.99768 * 20 18 16 24 24 C 1.55162 * 101.57796 * 322.99265 * 13 12 11 25 25 C 1.47025 * 125.64758 * 174.48515 * 11 9 8 26 26 H 1.09000 * 109.87811 * 298.40855 * 25 11 9 27 27 C 1.52994 * 109.88126 * 59.57047 * 25 11 9 28 28 C 1.36078 * 105.72610 * 180.24290 * 8 7 6 29 29 O 1.33775 * 109.82600 * 359.60256 * 28 8 7 30 30 C 1.34956 * 111.33669 * 0.42489 * 29 28 8 31 31 H 1.09003 * 109.46917 * 60.00518 * 1 2 3 32 32 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47517 * 299.99958 * 1 2 3 34 34 H 1.07999 * 119.70455 * 0.02562 * 4 3 2 35 35 H 1.07996 * 119.87450 * 180.02562 * 5 4 3 36 36 H 1.08001 * 120.13947 * 180.02562 * 6 5 4 37 37 H 1.09004 * 110.36776 * 85.24121 * 12 11 9 38 38 H 1.08998 * 110.36828 * 322.92019 * 12 11 9 39 39 H 0.97000 * 119.99944 * 87.20122 * 15 13 12 40 40 H 0.97003 * 120.00045 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.71950 * 153.86481 * 24 13 12 42 42 H 1.09003 * 110.72018 * 277.13297 * 24 13 12 43 43 H 1.09002 * 109.47222 * 177.80918 * 27 25 11 44 44 H 1.08999 * 109.47408 * 297.81297 * 27 25 11 45 45 H 1.08996 * 109.47171 * 57.81118 * 27 25 11 46 46 H 1.07997 * 125.08369 * 179.72658 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9118 3.6130 -0.0011 6 6 3.2875 3.7039 -0.0006 7 6 4.0559 2.5434 -0.0003 8 6 5.5068 2.2689 -0.0002 9 6 6.5972 3.2558 -0.0010 10 8 6.4018 4.3777 -0.4286 11 7 7.8129 2.9172 0.4722 12 6 8.1570 1.6386 1.1204 13 6 9.3924 1.9589 1.9984 14 1 9.0941 2.4171 2.9414 15 7 10.1959 0.7566 2.2330 16 6 9.9728 -0.0096 3.3458 17 1 9.2075 0.2748 4.0528 18 6 10.7303 -1.1519 3.5652 19 7 11.6627 -1.4988 2.7035 20 14 10.4254 -2.1976 5.0828 21 1 9.4068 -3.2331 4.7740 22 1 11.6918 -2.8558 5.4930 23 1 9.9353 -1.3351 6.1879 24 6 10.1554 2.9721 1.1047 25 6 9.0159 3.7613 0.4264 26 1 9.2789 3.9757 -0.6094 27 6 8.7645 5.0668 1.1834 28 6 5.6257 0.9133 -0.0055 29 8 4.4117 0.3513 0.0000 30 6 3.4380 1.2858 -0.0002 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2157 2.3113 -0.0005 35 1 1.3133 4.5120 -0.0011 36 1 3.7670 4.6716 -0.0006 37 1 8.4088 0.8887 0.3705 38 1 7.3300 1.2931 1.7407 39 1 10.8834 0.5012 1.5981 40 1 12.1918 -2.2973 2.8566 41 1 10.7736 3.6330 1.7123 42 1 10.7599 2.4521 0.3616 43 1 9.6723 5.6702 1.1785 44 1 7.9589 5.6185 0.6990 45 1 8.4834 4.8419 2.2122 46 1 6.5603 0.3722 -0.0111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988850221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:25 Heat of formation + Delta-G solvation = -17.567651 kcal Electronic energy + Delta-G solvation = -30000.683129 eV Core-core repulsion = 25857.978854 eV Total energy + Delta-G solvation = -4142.704276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.70626 -39.93653 -39.64072 -37.43881 -36.98250 -34.23481 -33.07552 -31.49682 -31.24579 -30.50738 -29.15329 -28.37589 -27.54303 -25.64297 -24.41731 -23.57353 -23.03325 -22.44682 -21.19122 -20.21758 -19.24876 -17.97382 -17.80331 -17.41557 -16.92595 -16.64154 -15.99674 -15.73900 -15.42436 -15.38623 -15.16576 -15.06688 -14.51101 -14.00533 -13.62787 -13.48465 -13.25263 -13.20875 -12.97526 -12.90206 -12.60475 -12.55380 -12.37151 -11.91667 -11.83994 -11.62931 -11.54042 -11.46500 -11.23250 -11.03462 -10.82075 -10.67599 -10.31351 -10.07576 -9.92378 -9.82328 -9.72774 -9.08085 -8.79465 -8.43856 -8.01947 -7.16068 -5.90869 -3.22248 0.69140 1.09446 1.72146 2.50158 2.83789 3.11766 3.25183 3.36721 3.43150 3.43913 3.59819 4.28863 4.41507 4.50802 4.54610 4.75761 4.82635 4.82928 4.93580 5.05353 5.07463 5.12615 5.17596 5.19096 5.25857 5.35429 5.42546 5.54619 5.57894 5.77274 5.79970 5.83776 5.93647 6.02419 6.06415 6.13852 6.15678 6.24895 6.28790 6.38996 6.40756 6.49652 6.61793 6.64305 6.78060 7.14170 7.58736 7.72669 8.26115 8.33743 9.38845 9.91200 10.26237 11.30819 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.003210 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.064687 B = 8719.664578 C =10961.480643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.147 3.853 4 C -0.194 4.194 5 C -0.093 4.093 6 C -0.100 4.100 7 C -0.049 4.049 8 C -0.232 4.232 9 C 0.604 3.396 10 O -0.543 6.543 11 N -0.605 5.605 12 C 0.061 3.939 13 C 0.176 3.824 14 H 0.069 0.931 15 N -0.711 5.711 16 C -0.252 4.252 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.928 5.928 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.138 4.138 25 C 0.142 3.858 26 H 0.071 0.929 27 C -0.162 4.162 28 C 0.079 3.921 29 O -0.172 6.172 30 C 0.017 3.983 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.388 0.612 40 H 0.257 0.743 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.663 8.440 -6.914 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.101 3.899 4 C -0.213 4.213 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.051 4.051 8 C -0.236 4.236 9 C 0.393 3.607 10 O -0.422 6.422 11 N -0.339 5.339 12 C -0.065 4.065 13 C 0.063 3.937 14 H 0.087 0.913 15 N -0.350 5.350 16 C -0.382 4.382 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.738 3.262 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.177 4.177 25 C 0.038 3.962 26 H 0.089 0.911 27 C -0.220 4.220 28 C 0.011 3.989 29 O -0.070 6.070 30 C -0.030 4.030 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.838 8.465 -6.979 21.800 hybrid contribution -0.053 -0.722 0.594 0.936 sum -18.891 7.743 -6.384 21.391 Atomic orbital electron populations 1.23100 0.78013 1.04229 1.01448 1.86166 1.21610 1.26081 1.88758 1.17672 0.86547 0.85572 1.00100 1.20924 0.99830 0.91069 1.09460 1.20828 0.94007 0.97001 0.99289 1.20553 0.92780 0.97610 1.00871 1.19190 0.91004 0.92859 1.02012 1.20864 0.92726 0.93558 1.16454 1.16640 0.80309 0.86149 0.77591 1.90733 1.82037 1.21027 1.48424 1.48442 1.08435 1.18613 1.58383 1.23743 1.01318 0.84711 0.96690 1.21260 0.89243 0.88173 0.95023 0.91260 1.42332 1.40537 1.25234 1.26923 1.19250 1.15795 1.03601 0.99595 0.90928 1.24765 0.98281 0.98575 0.98670 1.69652 1.24365 1.26890 1.36628 0.86197 0.77103 0.80441 0.82471 1.21513 1.21676 1.20615 1.23050 0.96477 0.98579 0.99631 1.21514 0.84126 0.90947 0.99569 0.91061 1.22154 1.02347 0.96816 1.00674 1.25079 0.87200 0.92534 0.94125 1.83941 1.13458 1.35218 1.74420 1.18633 0.87655 0.86818 1.09856 0.92458 0.88023 0.92417 0.84269 0.84852 0.84482 0.91130 0.90954 0.77799 0.93267 0.89994 0.90485 0.91975 0.91209 0.92440 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.70 10.50 -19.60 -0.21 -3.90 16 3 C 0.15 1.85 6.70 -39.12 -0.26 1.59 16 4 C -0.19 -1.93 9.02 -39.41 -0.36 -2.29 16 5 C -0.09 -0.95 10.03 -39.58 -0.40 -1.35 16 6 C -0.10 -1.31 10.06 -39.36 -0.40 -1.70 16 7 C -0.05 -0.74 6.32 -104.99 -0.66 -1.40 16 8 C -0.23 -3.58 5.96 -103.24 -0.62 -4.20 16 9 C 0.60 10.03 7.62 -12.68 -0.10 9.94 16 10 O -0.54 -10.09 15.61 5.23 0.08 -10.01 16 11 N -0.61 -9.39 3.08 -164.41 -0.51 -9.90 16 12 C 0.06 0.98 4.89 -2.53 -0.01 0.97 16 13 C 0.18 3.14 3.71 -65.78 -0.24 2.90 16 14 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 15 N -0.71 -16.07 5.24 -51.35 -0.27 -16.34 16 16 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.93 -26.42 13.06 55.49 0.72 -25.69 16 20 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 C -0.14 -2.07 6.14 -24.90 -0.15 -2.22 16 25 C 0.14 2.04 3.53 -66.96 -0.24 1.81 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 C -0.16 -2.20 9.04 37.15 0.34 -1.87 16 28 C 0.08 1.11 10.24 29.96 0.31 1.42 16 29 O -0.17 -2.59 10.53 5.28 0.06 -2.53 16 30 C 0.02 0.25 7.33 -38.45 -0.28 -0.03 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 34 H 0.14 0.93 6.26 -52.49 -0.33 0.60 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.14 1.79 7.91 -52.49 -0.42 1.38 16 37 H 0.07 1.11 7.32 -51.93 -0.38 0.73 16 38 H 0.07 1.16 6.93 -51.93 -0.36 0.80 16 39 H 0.39 9.33 7.76 -40.82 -0.32 9.01 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.08 1.15 7.83 -51.93 -0.41 0.75 16 42 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.04 6.61 -51.93 -0.34 0.70 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.22 2.67 5.85 -52.49 -0.31 2.36 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -31.71 379.41 -7.90 -39.61 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.15 Total: 8.86 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.33 Total: -2.13 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.05 Total: -51.93 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.07 Total: -16.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.71 -7.90 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988850221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.038 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds