Wall clock time and date at job start Wed Apr 1 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35956 * 117.00039 * 2 1 4 4 C 1.38331 * 120.05828 * 359.97438 * 3 2 1 5 5 C 1.38607 * 120.58702 * 180.02562 * 4 3 2 6 6 C 1.37866 * 120.25114 * 359.97438 * 5 4 3 7 7 C 1.39190 * 119.73090 * 0.03930 * 6 5 4 8 8 C 1.47657 * 134.22439 * 179.97438 * 7 6 5 9 9 C 1.47077 * 127.13970 * 359.97438 * 8 7 6 10 10 O 1.21649 * 119.99644 * 336.09552 * 9 8 7 11 11 N 1.34777 * 120.00045 * 156.08955 * 9 8 7 12 12 C 1.47420 * 125.64869 * 354.54329 * 11 9 8 13 13 C 1.54910 * 104.83435 * 204.07784 * 12 11 9 14 14 H 1.09003 * 111.03514 * 81.07309 * 13 12 11 15 15 N 1.46495 * 111.00749 * 204.91693 * 13 12 11 16 16 C 1.36933 * 119.99927 * 267.47017 * 15 13 12 17 17 H 1.08004 * 120.00434 * 359.72169 * 16 15 13 18 18 C 1.38814 * 120.00095 * 179.72728 * 16 15 13 19 19 N 1.31611 * 119.99865 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99989 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47288 * 89.99880 * 20 18 16 22 22 H 1.48500 * 109.47047 * 209.99857 * 20 18 16 23 23 H 1.48501 * 109.47129 * 329.99768 * 20 18 16 24 24 C 1.55162 * 101.57796 * 322.99265 * 13 12 11 25 25 C 1.47025 * 125.64758 * 174.48515 * 11 9 8 26 26 H 1.09000 * 109.87811 * 298.40855 * 25 11 9 27 27 C 1.52994 * 109.88126 * 59.57047 * 25 11 9 28 28 C 1.36078 * 105.72610 * 180.24290 * 8 7 6 29 29 O 1.33775 * 109.82600 * 359.60256 * 28 8 7 30 30 C 1.34956 * 111.33669 * 0.42489 * 29 28 8 31 31 H 1.09003 * 109.46917 * 60.00518 * 1 2 3 32 32 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47517 * 299.99958 * 1 2 3 34 34 H 1.07999 * 119.70455 * 0.02562 * 4 3 2 35 35 H 1.07996 * 119.87450 * 180.02562 * 5 4 3 36 36 H 1.08001 * 120.13947 * 180.02562 * 6 5 4 37 37 H 1.09004 * 110.36776 * 85.24121 * 12 11 9 38 38 H 1.08998 * 110.36828 * 322.92019 * 12 11 9 39 39 H 0.97000 * 119.99944 * 87.20122 * 15 13 12 40 40 H 0.97003 * 120.00045 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.71950 * 153.86481 * 24 13 12 42 42 H 1.09003 * 110.72018 * 277.13297 * 24 13 12 43 43 H 1.09002 * 109.47222 * 177.80918 * 27 25 11 44 44 H 1.08999 * 109.47408 * 297.81297 * 27 25 11 45 45 H 1.08996 * 109.47171 * 57.81118 * 27 25 11 46 46 H 1.07997 * 125.08369 * 179.72658 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9118 3.6130 -0.0011 6 6 3.2875 3.7039 -0.0006 7 6 4.0559 2.5434 -0.0003 8 6 5.5068 2.2689 -0.0002 9 6 6.5972 3.2558 -0.0010 10 8 6.4018 4.3777 -0.4286 11 7 7.8129 2.9172 0.4722 12 6 8.1570 1.6386 1.1204 13 6 9.3924 1.9589 1.9984 14 1 9.0941 2.4171 2.9414 15 7 10.1959 0.7566 2.2330 16 6 9.9728 -0.0096 3.3458 17 1 9.2075 0.2748 4.0528 18 6 10.7303 -1.1519 3.5652 19 7 11.6627 -1.4988 2.7035 20 14 10.4254 -2.1976 5.0828 21 1 9.4068 -3.2331 4.7740 22 1 11.6918 -2.8558 5.4930 23 1 9.9353 -1.3351 6.1879 24 6 10.1554 2.9721 1.1047 25 6 9.0159 3.7613 0.4264 26 1 9.2789 3.9757 -0.6094 27 6 8.7645 5.0668 1.1834 28 6 5.6257 0.9133 -0.0055 29 8 4.4117 0.3513 0.0000 30 6 3.4380 1.2858 -0.0002 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 0.2157 2.3113 -0.0005 35 1 1.3133 4.5120 -0.0011 36 1 3.7670 4.6716 -0.0006 37 1 8.4088 0.8887 0.3705 38 1 7.3300 1.2931 1.7407 39 1 10.8834 0.5012 1.5981 40 1 12.1918 -2.2973 2.8566 41 1 10.7736 3.6330 1.7123 42 1 10.7599 2.4521 0.3616 43 1 9.6723 5.6702 1.1785 44 1 7.9589 5.6185 0.6990 45 1 8.4834 4.8419 2.2122 46 1 6.5603 0.3722 -0.0111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988850221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:24 Heat of formation + Delta-G solvation = -37.148782 kcal Electronic energy + Delta-G solvation = -30001.532231 eV Core-core repulsion = 25857.978854 eV Total energy + Delta-G solvation = -4143.553377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.75664 -41.18002 -40.53203 -38.76159 -37.92809 -35.97865 -34.23519 -33.20680 -32.42843 -31.39586 -30.16490 -29.95604 -28.16307 -26.89350 -25.99551 -25.02476 -24.06265 -23.38969 -22.48068 -21.51306 -20.37575 -19.31066 -19.01066 -18.84661 -17.88021 -17.67465 -17.27427 -16.92230 -16.46338 -16.37812 -16.28064 -16.15435 -15.97038 -15.42316 -15.12637 -14.74285 -14.57974 -14.33856 -14.23969 -14.10290 -13.80275 -13.37491 -13.29558 -13.21652 -13.03860 -12.98803 -12.80148 -12.52383 -12.29458 -12.27154 -12.22053 -12.15099 -12.06227 -11.72287 -11.46045 -11.14829 -10.97573 -10.84428 -9.78105 -9.74911 -9.06033 -8.95636 -7.94508 -5.24062 -0.31279 0.14732 0.63978 1.48058 1.50914 1.51728 1.59187 1.76853 2.05879 2.21664 2.57114 2.60785 3.27349 3.28250 3.36903 3.62764 3.80215 3.83415 3.95809 3.96205 4.02407 4.10289 4.12646 4.24907 4.30843 4.38228 4.41656 4.44780 4.47478 4.51719 4.70846 4.71798 4.74936 4.84155 4.90752 5.02180 5.03641 5.15283 5.21404 5.24591 5.32692 5.39620 5.48159 5.49938 5.55698 5.68490 6.26660 6.31359 6.42144 7.04274 7.35302 8.05560 8.30453 9.27912 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.003210 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.064687 B = 8719.664578 C =10961.480643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.337 6.337 3 C 0.138 3.862 4 C -0.181 4.181 5 C -0.075 4.075 6 C -0.124 4.124 7 C -0.070 4.070 8 C -0.255 4.255 9 C 0.604 3.396 10 O -0.567 6.567 11 N -0.603 5.603 12 C 0.074 3.926 13 C 0.169 3.831 14 H 0.064 0.936 15 N -0.720 5.720 16 C -0.243 4.243 17 H 0.077 0.923 18 C -0.065 4.065 19 N -0.963 5.963 20 Si 0.965 3.035 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.271 1.271 24 C -0.125 4.125 25 C 0.140 3.860 26 H 0.079 0.921 27 C -0.155 4.155 28 C 0.088 3.912 29 O -0.184 6.184 30 C -0.014 4.014 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.379 0.621 40 H 0.252 0.748 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.045 9.301 -6.731 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.093 3.907 4 C -0.200 4.200 5 C -0.093 4.093 6 C -0.142 4.142 7 C -0.071 4.071 8 C -0.260 4.260 9 C 0.395 3.605 10 O -0.448 6.448 11 N -0.335 5.335 12 C -0.051 4.051 13 C 0.059 3.941 14 H 0.082 0.918 15 N -0.359 5.359 16 C -0.375 4.375 17 H 0.095 0.905 18 C -0.258 4.258 19 N -0.613 5.613 20 Si 0.794 3.206 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.196 1.196 24 C -0.164 4.164 25 C 0.038 3.962 26 H 0.097 0.903 27 C -0.212 4.212 28 C 0.019 3.981 29 O -0.083 6.083 30 C -0.060 4.060 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.197 0.803 35 H 0.189 0.811 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.212 0.788 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -21.264 9.363 -6.790 24.206 hybrid contribution 0.511 -0.918 0.505 1.166 sum -20.752 8.445 -6.286 23.270 Atomic orbital electron populations 1.23472 0.75370 1.05956 1.03062 1.86139 1.24396 1.25965 1.88623 1.17978 0.86029 0.86860 0.99880 1.21399 1.01592 0.89827 1.07144 1.21273 0.92976 0.98665 0.96409 1.20695 0.94197 0.96697 1.02603 1.19419 0.90883 0.93822 1.03024 1.20901 0.93062 0.93893 1.18124 1.16783 0.80579 0.86029 0.77130 1.90708 1.82415 1.22018 1.49630 1.48422 1.08611 1.18487 1.58026 1.23445 1.00237 0.85014 0.96452 1.21382 0.89837 0.87218 0.95702 0.91828 1.42404 1.41062 1.26324 1.26076 1.19576 1.14660 1.03288 0.99977 0.90543 1.25439 0.98863 1.00176 1.01286 1.69783 1.25772 1.27357 1.38389 0.85279 0.76393 0.78962 0.79945 1.21543 1.22461 1.19618 1.22950 0.96438 0.97848 0.99124 1.21621 0.83393 0.91101 1.00135 0.90304 1.22089 1.02976 0.96367 0.99808 1.25267 0.87498 0.92226 0.93082 1.83910 1.13861 1.35811 1.74701 1.19073 0.88661 0.86608 1.11628 0.90657 0.86499 0.90796 0.80304 0.81110 0.85255 0.90758 0.91055 0.78792 0.93959 0.88699 0.90292 0.89562 0.92664 0.93023 0.74624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.48 10.50 -93.06 -0.98 -8.46 16 3 C 0.14 3.32 6.70 22.57 0.15 3.47 16 4 C -0.18 -3.06 9.02 22.38 0.20 -2.86 16 5 C -0.08 -1.34 10.03 22.27 0.22 -1.12 16 6 C -0.12 -3.18 10.06 22.41 0.23 -2.95 16 7 C -0.07 -2.13 6.32 -20.11 -0.13 -2.26 16 8 C -0.26 -8.11 5.96 -18.97 -0.11 -8.22 16 9 C 0.60 20.36 7.62 86.56 0.66 21.02 16 10 O -0.57 -21.39 15.61 -4.19 -0.07 -21.45 16 11 N -0.60 -18.58 3.08 -792.30 -2.44 -21.02 16 12 C 0.07 2.35 4.89 86.86 0.43 2.78 16 13 C 0.17 5.97 3.71 46.39 0.17 6.14 16 14 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 15 N -0.72 -32.48 5.24 -316.37 -1.66 -34.14 16 16 C -0.24 -12.44 9.96 84.03 0.84 -11.60 16 17 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 18 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 19 N -0.96 -55.54 13.06 21.65 0.28 -55.26 16 20 Si 0.96 44.05 29.55 68.60 2.03 46.08 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C -0.12 -3.59 6.14 31.78 0.20 -3.39 16 25 C 0.14 3.91 3.53 45.34 0.16 4.07 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 C -0.15 -4.02 9.04 71.98 0.65 -3.37 16 28 C 0.09 2.53 10.24 67.32 0.69 3.22 16 29 O -0.18 -5.69 10.53 -4.03 -0.04 -5.73 16 30 C -0.01 -0.40 7.33 23.00 0.17 -0.23 16 31 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 34 H 0.18 1.51 6.26 -2.91 -0.02 1.49 16 35 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.13 3.43 7.91 -2.91 -0.02 3.41 16 37 H 0.07 2.33 7.32 -2.38 -0.02 2.31 16 38 H 0.07 2.28 6.93 -2.39 -0.02 2.27 16 39 H 0.38 18.37 7.76 -92.71 -0.72 17.65 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.09 2.50 7.83 -2.39 -0.02 2.48 16 42 H 0.08 2.27 8.00 -2.39 -0.02 2.25 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.62 6.61 -2.39 -0.02 1.61 16 45 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.24 5.76 5.85 -2.91 -0.02 5.74 16 Total: -1.00 -69.65 379.41 3.53 -66.12 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.30 Total: 30.92 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.10 Total: 2.94 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.82 Total: -110.42 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.09 Total: -35.64 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.65 3.53 -66.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988850221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.974 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds