Wall clock time and date at job start Wed Apr 1 2020 02:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35975 * 116.99745 * 2 1 4 4 C 1.39128 * 119.95741 * 359.97438 * 3 2 1 5 5 C 1.37785 * 120.59676 * 180.02562 * 4 3 2 6 6 C 1.38973 * 120.05247 * 359.97438 * 5 4 3 7 7 O 1.34984 * 133.03888 * 179.97438 * 6 5 4 8 8 C 1.33786 * 111.34955 * 180.02562 * 7 6 5 9 9 C 1.36077 * 109.85064 * 0.02562 * 8 7 6 10 10 C 1.47065 * 127.13825 * 179.97438 * 9 8 7 11 11 O 1.21645 * 120.00209 * 188.33163 * 10 9 8 12 12 N 1.34782 * 119.99785 * 8.32961 * 10 9 8 13 13 C 1.47423 * 125.65058 * 358.75634 * 12 10 9 14 14 C 1.54900 * 104.93040 * 155.83200 * 13 12 10 15 15 H 1.08997 * 111.00958 * 278.98675 * 14 13 12 16 16 N 1.46505 * 111.00530 * 155.13470 * 14 13 12 17 17 C 1.36943 * 119.99552 * 86.45649 * 16 14 13 18 18 H 1.07998 * 119.99935 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99639 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99765 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00144 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46880 * 90.00296 * 21 19 17 23 23 H 1.48497 * 109.46852 * 210.00021 * 21 19 17 24 24 H 1.48499 * 109.46921 * 330.00227 * 21 19 17 25 25 C 1.55450 * 101.45132 * 37.00293 * 14 13 12 26 26 C 1.47016 * 125.64811 * 178.76977 * 12 10 9 27 27 H 1.09001 * 109.88794 * 300.46442 * 26 12 10 28 28 C 1.53003 * 109.87855 * 61.47345 * 26 12 10 29 29 C 1.40226 * 119.34753 * 0.26246 * 6 5 4 30 30 C 1.38296 * 119.95542 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47237 * 300.00305 * 1 2 3 32 32 H 1.09003 * 109.47010 * 60.00196 * 1 2 3 33 33 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 34 34 H 1.08000 * 119.69743 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.97579 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.07829 * 180.02562 * 8 7 6 37 37 H 1.08998 * 110.36457 * 274.72886 * 13 12 10 38 38 H 1.09004 * 110.36676 * 36.93551 * 13 12 10 39 39 H 0.96993 * 120.00291 * 266.45776 * 16 14 13 40 40 H 0.97002 * 119.99980 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.70483 * 206.14173 * 25 14 13 42 42 H 1.09004 * 110.70193 * 82.88948 * 25 14 13 43 43 H 1.08994 * 109.47506 * 58.54468 * 28 26 12 44 44 H 1.09002 * 109.47285 * 178.54653 * 28 26 12 45 45 H 1.09008 * 109.47028 * 298.54300 * 28 26 12 46 46 H 1.07992 * 120.20791 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2876 2.3778 -0.0005 5 6 1.8994 3.6124 -0.0011 6 6 3.2862 3.7020 -0.0005 7 8 4.1420 4.7458 -0.0013 8 6 5.4144 4.3325 -0.0008 9 6 5.4585 2.9725 -0.0003 10 6 6.6590 2.1230 -0.0002 11 8 6.5534 0.9208 -0.1523 12 7 7.8762 2.6767 0.1684 13 6 8.1499 4.1155 0.3366 14 6 9.5031 4.1792 1.0878 15 1 9.3635 4.0264 2.1580 16 7 10.1901 5.4463 0.8257 17 6 9.9146 6.5461 1.5936 18 1 9.1906 6.4795 2.3922 19 6 10.5652 7.7469 1.3449 20 7 10.3000 8.8041 2.0827 21 14 11.8170 7.8622 -0.0369 22 1 11.1321 8.2592 -1.2933 23 1 12.8439 8.8775 0.3092 24 1 12.4698 6.5418 -0.2248 25 6 10.2670 2.9854 0.4493 26 6 9.1510 1.9458 0.2148 27 1 9.1364 1.2265 1.0337 28 6 9.3826 1.2192 -1.1116 29 6 4.0508 2.5265 -0.0051 30 6 3.4274 1.2829 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2095 2.3147 -0.0014 35 1 1.3007 4.5113 -0.0019 36 1 6.2777 4.9814 -0.0009 37 1 8.2322 4.6021 -0.6352 38 1 7.3644 4.5843 0.9294 39 1 10.8401 5.5062 0.1082 40 1 10.7549 9.6431 1.9091 41 1 11.0181 2.5965 1.1369 42 1 10.7235 3.2810 -0.4953 43 1 9.3883 1.9431 -1.9263 44 1 10.3410 0.7009 -1.0794 45 1 8.5836 0.4957 -1.2740 46 1 4.0182 0.3789 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989157213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:37 Heat of formation + Delta-G solvation = -6.420036 kcal Electronic energy + Delta-G solvation = -29895.910815 eV Core-core repulsion = 25753.689936 eV Total energy + Delta-G solvation = -4142.220879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.67551 -39.98636 -39.81177 -37.45484 -36.68138 -34.41433 -33.34589 -31.75738 -31.57502 -30.29166 -29.21394 -28.99107 -27.38527 -25.90301 -24.32930 -23.54154 -23.20104 -22.13532 -20.96647 -20.53565 -19.20524 -18.37137 -17.84099 -17.57697 -17.05980 -16.52306 -16.22302 -15.86765 -15.67195 -15.59217 -14.99764 -14.55490 -14.18463 -14.06244 -13.93274 -13.59421 -13.43636 -13.26947 -13.09686 -12.92341 -12.70484 -12.65270 -12.51751 -12.34381 -12.14376 -11.85150 -11.46740 -11.21100 -11.14694 -10.99743 -10.86303 -10.77848 -10.46529 -10.25826 -10.15309 -9.81729 -9.73682 -9.13741 -8.55393 -8.47864 -8.15942 -7.49369 -5.92555 -3.31815 0.60741 1.15534 1.67842 2.54582 2.93219 3.09765 3.23952 3.27218 3.29740 3.36745 3.60763 4.31868 4.37446 4.44981 4.52482 4.72239 4.75975 4.83524 4.86286 4.88778 4.89640 5.06339 5.08477 5.15352 5.23552 5.30262 5.39725 5.47115 5.59908 5.60936 5.67074 5.71675 5.83020 5.85757 5.93191 5.98075 6.03506 6.15189 6.17804 6.22045 6.23441 6.32263 6.55379 6.61464 6.83976 7.15469 7.65002 7.80837 8.25625 8.30673 9.01960 9.74024 9.91570 11.24657 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002773 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.646610 B =10094.957366 C =11556.606873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.112 3.888 4 C -0.179 4.179 5 C -0.063 4.063 6 C 0.011 3.989 7 O -0.180 6.180 8 C 0.072 3.928 9 C -0.235 4.235 10 C 0.603 3.397 11 O -0.542 6.542 12 N -0.606 5.606 13 C 0.055 3.945 14 C 0.180 3.820 15 H 0.076 0.924 16 N -0.736 5.736 17 C -0.258 4.258 18 H 0.093 0.907 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.139 4.139 26 C 0.142 3.858 27 H 0.076 0.924 28 C -0.162 4.162 29 C -0.050 4.050 30 C -0.099 4.099 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.235 0.765 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.365 0.635 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 -14.378 -5.753 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.067 3.933 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.035 4.035 7 O -0.079 6.079 8 C 0.003 3.997 9 C -0.239 4.239 10 C 0.393 3.607 11 O -0.421 6.421 12 N -0.340 5.340 13 C -0.070 4.070 14 C 0.068 3.932 15 H 0.094 0.906 16 N -0.377 5.377 17 C -0.388 4.388 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.572 5.572 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.178 4.178 26 C 0.039 3.961 27 H 0.094 0.906 28 C -0.220 4.220 29 C -0.051 4.051 30 C -0.118 4.118 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.251 0.749 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.199 0.801 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.962 -14.775 -5.650 22.473 hybrid contribution 0.752 0.474 -0.969 1.315 sum -15.210 -14.301 -6.620 21.902 Atomic orbital electron populations 1.23068 0.78440 1.04023 1.01307 1.86113 1.21237 1.26379 1.89054 1.18711 0.91755 0.84285 0.98574 1.20979 1.00144 0.90961 1.07715 1.19663 0.88861 0.98279 1.01330 1.19508 0.91938 0.84592 1.07500 1.83934 1.15137 1.34070 1.74755 1.25856 0.85051 0.95183 0.93569 1.20834 0.92895 0.93270 1.16918 1.16655 0.80818 0.86555 0.76646 1.90743 1.86001 1.14397 1.50984 1.48394 1.05263 1.09107 1.71225 1.23819 1.01855 0.79827 1.01538 1.21285 0.88897 0.85540 0.97511 0.90629 1.42672 1.48182 1.07239 1.39630 1.19053 1.21046 0.87005 1.11658 0.88913 1.24693 0.99426 0.95676 0.98697 1.69697 1.45334 1.01152 1.41052 0.86585 0.82003 0.77361 0.82764 1.20908 1.21588 1.20175 1.23097 0.96931 0.95709 1.02073 1.21496 0.82350 0.94010 0.98249 0.90599 1.22144 1.02197 1.00912 0.96724 1.19047 0.91030 0.93103 1.01931 1.19712 0.91028 0.97494 1.03554 0.92594 0.92636 0.88203 0.84207 0.84418 0.74907 0.90676 0.90237 0.80119 0.92798 0.89844 0.90455 0.92589 0.91820 0.91278 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.45 10.50 -19.66 -0.21 -3.66 16 3 C 0.11 1.35 6.68 -39.23 -0.26 1.08 16 4 C -0.18 -1.76 9.01 -39.42 -0.36 -2.11 16 5 C -0.06 -0.67 10.06 -39.47 -0.40 -1.07 16 6 C 0.01 0.15 7.39 -38.56 -0.28 -0.14 16 7 O -0.18 -2.50 10.53 5.17 0.05 -2.45 16 8 C 0.07 0.98 10.40 29.96 0.31 1.29 16 9 C -0.23 -3.60 6.25 -103.25 -0.64 -4.25 16 10 C 0.60 9.95 7.63 -12.68 -0.10 9.86 16 11 O -0.54 -10.13 15.32 5.24 0.08 -10.05 16 12 N -0.61 -9.08 3.07 -164.42 -0.50 -9.58 16 13 C 0.06 0.83 4.97 -2.54 -0.01 0.81 16 14 C 0.18 2.99 3.70 -65.62 -0.24 2.75 16 15 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 16 N -0.74 -15.24 5.08 -51.20 -0.26 -15.50 16 17 C -0.26 -6.56 10.47 -15.06 -0.16 -6.72 16 18 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 20 N -0.93 -27.34 13.97 55.49 0.78 -26.56 16 21 Si 0.88 20.49 27.74 -169.99 -4.71 15.77 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -5.97 6.52 56.52 0.37 -5.60 16 25 C -0.14 -1.90 6.12 -24.74 -0.15 -2.06 16 26 C 0.14 1.95 3.46 -66.96 -0.23 1.71 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.16 -2.06 9.11 37.16 0.34 -1.72 16 29 C -0.05 -0.75 6.29 -104.98 -0.66 -1.41 16 30 C -0.10 -1.43 9.83 -39.24 -0.39 -1.81 16 31 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 32 H 0.06 0.27 7.65 -51.93 -0.40 -0.12 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.14 0.91 6.27 -52.49 -0.33 0.58 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.24 2.84 4.67 -52.49 -0.25 2.60 16 37 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 38 H 0.08 1.16 5.33 -51.93 -0.28 0.88 16 39 H 0.37 7.47 5.58 -40.82 -0.23 7.24 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.03 7.72 -51.93 -0.40 0.63 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.00 6.83 -51.92 -0.35 0.64 16 46 H 0.14 2.22 7.57 -52.49 -0.40 1.82 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -32.19 374.20 -7.47 -39.66 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.99 Total: 9.12 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.34 Total: -2.39 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.01 Total: -51.65 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.07 Total: -16.15 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.71 Total: 15.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.19 -7.47 -39.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989157213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.240 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds