Wall clock time and date at job start Wed Apr 1 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35975 * 116.99745 * 2 1 4 4 C 1.39128 * 119.95741 * 359.97438 * 3 2 1 5 5 C 1.37785 * 120.59676 * 180.02562 * 4 3 2 6 6 C 1.38973 * 120.05247 * 359.97438 * 5 4 3 7 7 O 1.34984 * 133.03888 * 179.97438 * 6 5 4 8 8 C 1.33786 * 111.34955 * 180.02562 * 7 6 5 9 9 C 1.36077 * 109.85064 * 0.02562 * 8 7 6 10 10 C 1.47065 * 127.13825 * 179.97438 * 9 8 7 11 11 O 1.21645 * 120.00209 * 188.33163 * 10 9 8 12 12 N 1.34782 * 119.99785 * 8.32961 * 10 9 8 13 13 C 1.47423 * 125.65058 * 358.75634 * 12 10 9 14 14 C 1.54900 * 104.93040 * 155.83200 * 13 12 10 15 15 H 1.08997 * 111.00958 * 278.98675 * 14 13 12 16 16 N 1.46505 * 111.00530 * 155.13470 * 14 13 12 17 17 C 1.36943 * 119.99552 * 86.45649 * 16 14 13 18 18 H 1.07998 * 119.99935 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99639 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99765 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00144 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46880 * 90.00296 * 21 19 17 23 23 H 1.48497 * 109.46852 * 210.00021 * 21 19 17 24 24 H 1.48499 * 109.46921 * 330.00227 * 21 19 17 25 25 C 1.55450 * 101.45132 * 37.00293 * 14 13 12 26 26 C 1.47016 * 125.64811 * 178.76977 * 12 10 9 27 27 H 1.09001 * 109.88794 * 300.46442 * 26 12 10 28 28 C 1.53003 * 109.87855 * 61.47345 * 26 12 10 29 29 C 1.40226 * 119.34753 * 0.26246 * 6 5 4 30 30 C 1.38296 * 119.95542 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47237 * 300.00305 * 1 2 3 32 32 H 1.09003 * 109.47010 * 60.00196 * 1 2 3 33 33 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 34 34 H 1.08000 * 119.69743 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.97579 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.07829 * 180.02562 * 8 7 6 37 37 H 1.08998 * 110.36457 * 274.72886 * 13 12 10 38 38 H 1.09004 * 110.36676 * 36.93551 * 13 12 10 39 39 H 0.96993 * 120.00291 * 266.45776 * 16 14 13 40 40 H 0.97002 * 119.99980 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.70483 * 206.14173 * 25 14 13 42 42 H 1.09004 * 110.70193 * 82.88948 * 25 14 13 43 43 H 1.08994 * 109.47506 * 58.54468 * 28 26 12 44 44 H 1.09002 * 109.47285 * 178.54653 * 28 26 12 45 45 H 1.09008 * 109.47028 * 298.54300 * 28 26 12 46 46 H 1.07992 * 120.20791 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2876 2.3778 -0.0005 5 6 1.8994 3.6124 -0.0011 6 6 3.2862 3.7020 -0.0005 7 8 4.1420 4.7458 -0.0013 8 6 5.4144 4.3325 -0.0008 9 6 5.4585 2.9725 -0.0003 10 6 6.6590 2.1230 -0.0002 11 8 6.5534 0.9208 -0.1523 12 7 7.8762 2.6767 0.1684 13 6 8.1499 4.1155 0.3366 14 6 9.5031 4.1792 1.0878 15 1 9.3635 4.0264 2.1580 16 7 10.1901 5.4463 0.8257 17 6 9.9146 6.5461 1.5936 18 1 9.1906 6.4795 2.3922 19 6 10.5652 7.7469 1.3449 20 7 10.3000 8.8041 2.0827 21 14 11.8170 7.8622 -0.0369 22 1 11.1321 8.2592 -1.2933 23 1 12.8439 8.8775 0.3092 24 1 12.4698 6.5418 -0.2248 25 6 10.2670 2.9854 0.4493 26 6 9.1510 1.9458 0.2148 27 1 9.1364 1.2265 1.0337 28 6 9.3826 1.2192 -1.1116 29 6 4.0508 2.5265 -0.0051 30 6 3.4274 1.2829 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2095 2.3147 -0.0014 35 1 1.3007 4.5113 -0.0019 36 1 6.2777 4.9814 -0.0009 37 1 8.2322 4.6021 -0.6352 38 1 7.3644 4.5843 0.9294 39 1 10.8401 5.5062 0.1082 40 1 10.7549 9.6431 1.9091 41 1 11.0181 2.5965 1.1369 42 1 10.7235 3.2810 -0.4953 43 1 9.3883 1.9431 -1.9263 44 1 10.3410 0.7009 -1.0794 45 1 8.5836 0.4957 -1.2740 46 1 4.0182 0.3789 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989157213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:36 Heat of formation + Delta-G solvation = -27.163674 kcal Electronic energy + Delta-G solvation = -29896.810326 eV Core-core repulsion = 25753.689936 eV Total energy + Delta-G solvation = -4143.120390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.71663 -41.19208 -40.69397 -38.78772 -37.57947 -36.09498 -34.46259 -33.50284 -32.72456 -31.21599 -30.52808 -30.19633 -27.99684 -27.07087 -25.82325 -24.73750 -24.46104 -23.08918 -22.20050 -21.88129 -20.36224 -19.66133 -19.25217 -18.67303 -18.08152 -17.67573 -17.33227 -16.93868 -16.59199 -16.51186 -16.30320 -16.11871 -15.56411 -15.38044 -15.01188 -14.84515 -14.45695 -14.44113 -14.35647 -14.01010 -13.97331 -13.80952 -13.60866 -13.40868 -13.17356 -12.94343 -12.87949 -12.79198 -12.24738 -12.17058 -11.93432 -11.88908 -11.85298 -11.79348 -11.53313 -11.31067 -11.13556 -10.95155 -9.80034 -9.49956 -9.33812 -9.11986 -7.98949 -5.35209 -0.38861 0.18747 0.60009 1.44400 1.46222 1.51343 1.54050 1.83650 2.08613 2.27214 2.52237 2.57906 3.19200 3.29989 3.34848 3.53916 3.66772 3.70258 3.81794 3.85025 3.97386 4.08129 4.08872 4.22329 4.25157 4.39333 4.41282 4.44102 4.44947 4.62759 4.64794 4.70446 4.75946 4.80963 4.84542 4.98150 5.03881 5.06649 5.10812 5.17232 5.21968 5.29248 5.33589 5.42413 5.80783 5.83798 6.23772 6.35858 6.39248 7.03736 7.09900 7.82438 8.02049 9.21506 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002773 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.646610 B =10094.957366 C =11556.606873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.119 3.881 4 C -0.167 4.167 5 C -0.053 4.053 6 C -0.009 4.009 7 O -0.182 6.182 8 C 0.084 3.916 9 C -0.261 4.261 10 C 0.600 3.400 11 O -0.572 6.572 12 N -0.603 5.603 13 C 0.063 3.937 14 C 0.171 3.829 15 H 0.065 0.935 16 N -0.735 5.735 17 C -0.233 4.233 18 H 0.063 0.937 19 C -0.057 4.057 20 N -0.980 5.980 21 Si 0.949 3.051 22 H -0.278 1.278 23 H -0.303 1.303 24 H -0.246 1.246 25 C -0.124 4.124 26 C 0.138 3.862 27 H 0.076 0.924 28 C -0.154 4.154 29 C -0.072 4.072 30 C -0.133 4.133 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.183 0.817 35 H 0.173 0.827 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.371 0.629 40 H 0.257 0.743 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 -15.086 -7.121 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.249 6.249 3 C 0.073 3.927 4 C -0.185 4.185 5 C -0.071 4.071 6 C -0.055 4.055 7 O -0.081 6.081 8 C 0.015 3.985 9 C -0.266 4.266 10 C 0.391 3.609 11 O -0.453 6.453 12 N -0.336 5.336 13 C -0.062 4.062 14 C 0.061 3.939 15 H 0.083 0.917 16 N -0.378 5.378 17 C -0.363 4.363 18 H 0.081 0.919 19 C -0.249 4.249 20 N -0.630 5.630 21 Si 0.776 3.224 22 H -0.205 1.205 23 H -0.230 1.230 24 H -0.171 1.171 25 C -0.163 4.163 26 C 0.035 3.965 27 H 0.094 0.906 28 C -0.212 4.212 29 C -0.074 4.074 30 C -0.152 4.152 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.200 0.800 35 H 0.190 0.810 36 H 0.261 0.739 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.205 0.795 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.116 -15.555 -7.036 24.175 hybrid contribution 0.898 0.544 -0.471 1.151 sum -16.219 -15.011 -7.508 23.340 Atomic orbital electron populations 1.23460 0.75729 1.05913 1.02903 1.86103 1.24069 1.26113 1.88657 1.18822 0.91121 0.85641 0.97093 1.21409 1.01954 0.89514 1.05606 1.20176 0.87732 0.99976 0.99183 1.19918 0.93007 0.83756 1.08793 1.83914 1.15168 1.34308 1.74668 1.25942 0.85446 0.94618 0.92453 1.20898 0.92991 0.93949 1.18721 1.16855 0.81434 0.86340 0.76223 1.90719 1.86430 1.15618 1.52557 1.48395 1.05441 1.09105 1.70636 1.23628 1.00850 0.80017 1.01696 1.21405 0.89945 0.85054 0.97496 0.91678 1.42566 1.48758 1.07282 1.39176 1.18995 1.18834 0.88188 1.10321 0.91873 1.25455 1.02273 0.95472 1.01725 1.69876 1.47494 1.01844 1.43768 0.85509 0.79188 0.78189 0.79481 1.20453 1.23050 1.17062 1.23030 0.96764 0.93785 1.02685 1.21643 0.81699 0.94113 0.99002 0.90625 1.22069 1.02715 1.00433 0.95935 1.19231 0.91185 0.94003 1.02964 1.19649 0.92416 0.96557 1.06618 0.90945 0.90894 0.86454 0.80032 0.81000 0.73866 0.89869 0.90124 0.79481 0.93395 0.88146 0.89257 0.92439 0.89334 0.93367 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -7.01 10.50 -93.27 -0.98 -7.99 16 3 C 0.12 2.77 6.68 22.50 0.15 2.92 16 4 C -0.17 -2.78 9.01 22.38 0.20 -2.58 16 5 C -0.05 -0.99 10.06 22.34 0.22 -0.76 16 6 C -0.01 -0.24 7.39 22.93 0.17 -0.07 16 7 O -0.18 -4.98 10.53 -4.42 -0.05 -5.03 16 8 C 0.08 2.32 10.40 67.32 0.70 3.02 16 9 C -0.26 -8.30 6.25 -18.97 -0.12 -8.42 16 10 C 0.60 20.45 7.63 86.56 0.66 21.11 16 11 O -0.57 -22.41 15.32 -4.17 -0.06 -22.48 16 12 N -0.60 -17.95 3.07 -792.33 -2.43 -20.38 16 13 C 0.06 1.85 4.97 86.85 0.43 2.28 16 14 C 0.17 5.49 3.70 46.48 0.17 5.66 16 15 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 16 N -0.74 -29.34 5.08 -315.89 -1.61 -30.95 16 17 C -0.23 -11.83 10.47 84.03 0.88 -10.95 16 18 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 19 C -0.06 -3.11 5.50 84.86 0.47 -2.65 16 20 N -0.98 -59.31 13.97 21.65 0.30 -59.01 16 21 Si 0.95 41.78 27.74 68.60 1.90 43.68 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.25 -9.52 6.52 99.48 0.65 -8.88 16 25 C -0.12 -3.09 6.12 31.88 0.20 -2.89 16 26 C 0.14 3.61 3.46 45.34 0.16 3.77 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 28 C -0.15 -3.69 9.11 71.98 0.66 -3.03 16 29 C -0.07 -2.25 6.29 -20.10 -0.13 -2.37 16 30 C -0.13 -4.03 9.83 22.49 0.22 -3.81 16 31 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 32 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.18 1.46 6.27 -2.91 -0.02 1.44 16 35 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.25 5.92 4.67 -2.91 -0.01 5.91 16 37 H 0.08 2.34 8.03 -2.39 -0.02 2.32 16 38 H 0.08 2.35 5.33 -2.39 -0.01 2.34 16 39 H 0.37 14.10 5.58 -92.71 -0.52 13.59 16 40 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.09 2.07 7.72 -2.38 -0.02 2.05 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.38 6.83 -2.38 -0.02 1.36 16 46 H 0.12 4.07 7.57 -2.91 -0.02 4.05 16 Total: -1.00 -73.09 374.20 3.69 -69.40 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.45 Total: 30.27 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 6.15 Total: 2.47 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -3.73 Total: -110.33 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.09 Total: -35.50 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.90 Total: 43.68 kcal Total: -73.09 3.69 -69.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989157213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.240 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds