Wall clock time and date at job start Wed Apr 1 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35556 * 117.00032 * 2 1 4 4 C 1.46696 * 127.03752 * 270.02824 * 3 2 1 5 5 C 1.39568 * 134.09007 * 0.02562 * 4 3 2 6 6 C 1.36670 * 119.73180 * 179.97438 * 5 4 3 7 7 C 1.38795 * 120.41623 * 0.02562 * 6 5 4 8 8 C 1.37813 * 120.71569 * 359.97438 * 7 6 5 9 9 C 1.39041 * 119.86239 * 0.02562 * 8 7 6 10 10 O 1.34766 * 133.06992 * 180.36354 * 9 8 7 11 11 C 1.35213 * 110.97005 * 180.10420 * 10 9 8 12 12 C 1.46190 * 125.23360 * 179.81299 * 11 10 9 13 13 O 1.21758 * 119.99710 * 179.69757 * 12 11 10 14 14 N 1.34778 * 119.99790 * 359.69879 * 12 11 10 15 15 C 1.47015 * 125.64845 * 359.97278 * 14 12 11 16 16 C 1.54325 * 107.27065 * 178.98781 * 15 14 12 17 17 H 1.08993 * 110.72326 * 96.17079 * 16 15 14 18 18 N 1.46501 * 110.71973 * 219.44858 * 16 15 14 19 19 C 1.36939 * 119.99602 * 268.52068 * 18 16 15 20 20 H 1.07999 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99856 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99812 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99785 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47089 * 90.00539 * 23 21 19 25 25 H 1.48504 * 109.47074 * 209.99969 * 23 21 19 26 26 H 1.48493 * 109.47285 * 330.00361 * 23 21 19 27 27 C 1.55157 * 102.94374 * 337.80787 * 16 15 14 28 28 C 1.47425 * 125.64271 * 180.02562 * 14 12 11 29 29 H 1.08999 * 110.36633 * 85.25141 * 28 14 12 30 30 C 1.52992 * 110.37020 * 322.91993 * 28 14 12 31 31 H 1.08993 * 109.46818 * 299.99877 * 1 2 3 32 32 H 1.09004 * 109.46780 * 60.00024 * 1 2 3 33 33 H 1.09001 * 109.47117 * 179.97438 * 1 2 3 34 34 H 1.08004 * 120.13380 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.78902 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.64439 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.06409 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.88350 * 59.56990 * 15 14 12 39 39 H 1.08997 * 110.01690 * 298.47505 * 15 14 12 40 40 H 0.96994 * 120.00419 * 88.52568 * 18 16 15 41 41 H 0.96997 * 120.00069 * 179.97438 * 22 21 19 42 42 H 1.09001 * 111.00846 * 153.57645 * 27 16 15 43 43 H 1.09000 * 111.00346 * 277.43176 * 27 16 15 44 44 H 1.09007 * 109.47404 * 304.58938 * 30 28 14 45 45 H 1.08998 * 109.47268 * 64.59415 * 30 28 14 46 46 H 1.09004 * 109.47314 * 184.59189 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 2.4451 1.9954 -1.1710 5 6 2.3464 1.8041 -2.5500 6 6 2.8306 2.7561 -3.4027 7 6 3.4197 3.9104 -2.9058 8 6 3.5265 4.1175 -1.5475 9 6 3.0408 3.1626 -0.6612 10 8 2.9992 3.0922 0.6839 11 6 2.4191 1.9405 1.0905 12 6 2.2176 1.5434 2.4829 13 8 1.6775 0.4832 2.7416 14 7 2.6297 2.3508 3.4803 15 6 3.2932 3.6517 3.3109 16 6 3.5542 4.2201 4.7217 17 1 4.5691 3.9926 5.0474 18 7 3.3100 5.6644 4.7520 19 6 4.3361 6.5375 4.5066 20 1 5.3253 6.1614 4.2912 21 6 4.1049 7.9059 4.5358 22 7 5.0912 8.7451 4.3005 23 14 2.3940 8.5563 4.9091 24 1 2.2473 8.7514 6.3739 25 1 2.1953 9.8538 4.2147 26 1 1.3794 7.5809 4.4356 27 6 2.5157 3.4694 5.5965 28 6 2.4907 2.0751 4.9219 29 1 3.3249 1.4684 5.2742 30 6 1.1620 1.3709 5.2037 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8892 0.9074 -2.9416 35 1 2.7543 2.6092 -4.4699 36 1 3.7977 4.6547 -3.5909 37 1 3.9865 5.0198 -1.1723 38 1 2.6458 4.3281 2.7526 39 1 4.2378 3.5228 2.7826 40 1 2.4217 6.0021 4.9459 41 1 4.9296 9.7014 4.3205 42 1 2.8545 3.3975 6.6300 43 1 1.5382 3.9483 5.5398 44 1 0.3419 1.9710 4.8094 45 1 1.1602 0.3926 4.7231 46 1 1.0373 1.2474 6.2795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989302715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:28 Heat of formation + Delta-G solvation = -9.415652 kcal Electronic energy + Delta-G solvation = -30707.703999 eV Core-core repulsion = 26565.353220 eV Total energy + Delta-G solvation = -4142.350778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.63249 -39.99920 -38.50473 -38.04490 -37.36234 -34.38073 -32.26874 -32.01762 -31.58226 -30.52468 -29.51753 -28.96442 -27.19498 -25.52956 -24.66259 -23.53071 -22.85438 -21.89818 -21.10623 -20.47876 -19.50887 -18.20335 -17.79863 -17.54829 -16.84904 -16.48337 -16.31328 -15.65384 -15.40172 -15.08561 -15.00133 -14.63606 -14.60058 -14.09728 -13.96930 -13.73739 -13.53665 -13.41667 -13.02622 -12.65226 -12.47845 -12.29568 -12.28153 -12.17259 -11.99617 -11.94588 -11.59464 -11.32377 -11.20848 -10.88301 -10.75080 -10.47952 -10.22245 -10.13818 -10.07835 -9.81445 -9.68679 -9.07377 -8.87118 -8.59849 -8.23508 -7.44408 -5.87574 -3.25690 0.35209 1.13226 1.56330 2.33275 3.01317 3.03220 3.30388 3.33212 3.39001 3.40432 3.57536 4.15747 4.49387 4.53128 4.67788 4.75773 4.90347 4.95613 5.01587 5.02666 5.08793 5.12828 5.21211 5.25413 5.31770 5.38968 5.48687 5.51402 5.54463 5.67333 5.71807 5.77705 5.87014 5.95633 5.99348 6.06852 6.12781 6.20260 6.22511 6.28804 6.38096 6.41149 6.53135 6.70982 6.86609 7.23390 7.53750 7.86527 8.08423 8.30896 9.07213 9.79423 9.97329 11.30034 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.004032 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.875228 B = 6942.398216 C = 9209.031691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.291 6.291 3 C 0.086 3.914 4 C -0.159 4.159 5 C -0.057 4.057 6 C -0.140 4.140 7 C -0.082 4.082 8 C -0.106 4.106 9 C 0.080 3.920 10 O -0.161 6.161 11 C -0.031 4.031 12 C 0.607 3.393 13 O -0.515 6.515 14 N -0.598 5.598 15 C 0.074 3.926 16 C 0.178 3.822 17 H 0.079 0.921 18 N -0.735 5.735 19 C -0.254 4.254 20 H 0.093 0.907 21 C 0.011 3.989 22 N -0.928 5.928 23 Si 0.882 3.118 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.141 4.141 28 C 0.138 3.862 29 H 0.080 0.920 30 C -0.161 4.161 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 -15.168 -11.082 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.038 3.962 4 C -0.160 4.160 5 C -0.076 4.076 6 C -0.158 4.158 7 C -0.100 4.100 8 C -0.124 4.124 9 C 0.031 3.969 10 O -0.062 6.062 11 C -0.082 4.082 12 C 0.395 3.605 13 O -0.394 6.394 14 N -0.330 5.330 15 C -0.052 4.052 16 C 0.067 3.933 17 H 0.097 0.903 18 N -0.377 5.377 19 C -0.383 4.383 20 H 0.111 0.889 21 C -0.185 4.185 22 N -0.575 5.575 23 Si 0.712 3.288 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.180 4.180 28 C 0.035 3.965 29 H 0.098 0.902 30 C -0.219 4.219 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.919 -15.581 -10.823 20.557 hybrid contribution -1.289 0.853 -0.006 1.546 sum -9.208 -14.727 -10.829 20.468 Atomic orbital electron populations 1.23039 0.78219 1.03519 1.00735 1.85939 1.20225 1.21186 1.93288 1.19353 0.99944 0.87708 0.89193 1.19980 1.05813 0.95711 0.94491 1.20289 0.97981 0.99196 0.90085 1.20805 1.00591 0.94414 0.99998 1.21045 0.97633 0.97556 0.93787 1.20166 1.02489 0.98648 0.91121 1.19617 0.99717 0.96100 0.81437 1.84394 1.66182 1.35164 1.20426 1.22244 1.04383 0.86835 0.94776 1.16074 0.79639 0.83611 0.81171 1.90847 1.44263 1.22436 1.81831 1.48532 1.57561 1.20839 1.06087 1.23372 0.97251 0.82213 1.02334 1.21153 0.97559 0.84381 0.90245 0.90299 1.42722 1.09633 1.00067 1.85229 1.19088 0.90761 0.87058 1.41401 0.88914 1.24664 0.96870 0.95756 1.01224 1.69696 1.30479 1.02096 1.55235 0.86597 0.85396 0.78506 0.78291 1.20884 1.21610 1.20333 1.23238 1.00996 0.93900 0.99886 1.21942 0.98640 0.96909 0.79003 0.90187 1.22143 0.95800 1.02465 1.01490 0.92963 0.93717 0.88382 0.85370 0.85097 0.84373 0.83990 0.90552 0.91315 0.80232 0.92887 0.89553 0.90675 0.92783 0.89939 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.13 101.05 1.12 1.55 16 2 O -0.29 -4.27 9.75 -30.33 -0.30 -4.56 16 3 C 0.09 1.33 6.52 -36.75 -0.24 1.09 16 4 C -0.16 -2.20 6.38 -105.09 -0.67 -2.87 16 5 C -0.06 -0.62 10.05 -39.65 -0.40 -1.02 16 6 C -0.14 -1.27 9.98 -39.94 -0.40 -1.66 16 7 C -0.08 -0.78 10.01 -39.53 -0.40 -1.17 16 8 C -0.11 -1.28 10.07 -39.44 -0.40 -1.68 16 9 C 0.08 1.17 7.39 -38.39 -0.28 0.88 16 10 O -0.16 -2.65 8.08 1.85 0.01 -2.64 16 11 C -0.03 -0.52 6.91 -36.98 -0.26 -0.77 16 12 C 0.61 10.29 7.58 -13.07 -0.10 10.19 16 13 O -0.51 -9.14 13.91 -6.83 -0.09 -9.24 16 14 N -0.60 -9.61 3.24 -164.75 -0.53 -10.15 16 15 C 0.07 1.28 5.28 -3.07 -0.02 1.27 16 16 C 0.18 3.19 3.61 -66.09 -0.24 2.95 16 17 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 18 N -0.74 -16.26 4.95 -51.65 -0.26 -16.52 16 19 C -0.25 -6.75 10.44 -15.06 -0.16 -6.91 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 22 N -0.93 -28.07 13.97 55.49 0.78 -27.30 16 23 Si 0.88 21.24 27.74 -169.99 -4.71 16.53 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 27 C -0.14 -2.04 6.13 -24.58 -0.15 -2.19 16 28 C 0.14 1.92 3.77 -66.42 -0.25 1.67 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 C -0.16 -2.08 8.59 37.15 0.32 -1.77 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.08 1.45 7.52 -51.93 -0.39 1.06 16 39 H 0.07 1.22 7.76 -51.93 -0.40 0.82 16 40 H 0.36 7.98 5.62 -40.82 -0.23 7.75 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.18 6.09 -51.93 -0.32 0.86 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -32.17 380.32 -8.39 -40.56 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.41 Total: 7.80 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.60 Total: -0.22 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.01 Total: -53.96 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.38 Total: -16.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.17 -8.39 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989302715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.141 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds