Wall clock time and date at job start Wed Apr 1 2020 02:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35556 * 117.00032 * 2 1 4 4 C 1.46696 * 127.03752 * 270.02824 * 3 2 1 5 5 C 1.39568 * 134.09007 * 0.02562 * 4 3 2 6 6 C 1.36670 * 119.73180 * 179.97438 * 5 4 3 7 7 C 1.38795 * 120.41623 * 0.02562 * 6 5 4 8 8 C 1.37813 * 120.71569 * 359.97438 * 7 6 5 9 9 C 1.39041 * 119.86239 * 0.02562 * 8 7 6 10 10 O 1.34766 * 133.06992 * 180.36354 * 9 8 7 11 11 C 1.35213 * 110.97005 * 180.10420 * 10 9 8 12 12 C 1.46190 * 125.23360 * 179.81299 * 11 10 9 13 13 O 1.21758 * 119.99710 * 179.69757 * 12 11 10 14 14 N 1.34778 * 119.99790 * 359.69879 * 12 11 10 15 15 C 1.47015 * 125.64845 * 359.97278 * 14 12 11 16 16 C 1.54325 * 107.27065 * 178.98781 * 15 14 12 17 17 H 1.08993 * 110.72326 * 96.17079 * 16 15 14 18 18 N 1.46501 * 110.71973 * 219.44858 * 16 15 14 19 19 C 1.36939 * 119.99602 * 268.52068 * 18 16 15 20 20 H 1.07999 * 120.00120 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99856 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99812 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99785 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47089 * 90.00539 * 23 21 19 25 25 H 1.48504 * 109.47074 * 209.99969 * 23 21 19 26 26 H 1.48493 * 109.47285 * 330.00361 * 23 21 19 27 27 C 1.55157 * 102.94374 * 337.80787 * 16 15 14 28 28 C 1.47425 * 125.64271 * 180.02562 * 14 12 11 29 29 H 1.08999 * 110.36633 * 85.25141 * 28 14 12 30 30 C 1.52992 * 110.37020 * 322.91993 * 28 14 12 31 31 H 1.08993 * 109.46818 * 299.99877 * 1 2 3 32 32 H 1.09004 * 109.46780 * 60.00024 * 1 2 3 33 33 H 1.09001 * 109.47117 * 179.97438 * 1 2 3 34 34 H 1.08004 * 120.13380 * 359.97438 * 5 4 3 35 35 H 1.07999 * 119.78902 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.64439 * 180.02562 * 7 6 5 37 37 H 1.08001 * 120.06409 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.88350 * 59.56990 * 15 14 12 39 39 H 1.08997 * 110.01690 * 298.47505 * 15 14 12 40 40 H 0.96994 * 120.00419 * 88.52568 * 18 16 15 41 41 H 0.96997 * 120.00069 * 179.97438 * 22 21 19 42 42 H 1.09001 * 111.00846 * 153.57645 * 27 16 15 43 43 H 1.09000 * 111.00346 * 277.43176 * 27 16 15 44 44 H 1.09007 * 109.47404 * 304.58938 * 30 28 14 45 45 H 1.08998 * 109.47268 * 64.59415 * 30 28 14 46 46 H 1.09004 * 109.47314 * 184.59189 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 2.4451 1.9954 -1.1710 5 6 2.3464 1.8041 -2.5500 6 6 2.8306 2.7561 -3.4027 7 6 3.4197 3.9104 -2.9058 8 6 3.5265 4.1175 -1.5475 9 6 3.0408 3.1626 -0.6612 10 8 2.9992 3.0922 0.6839 11 6 2.4191 1.9405 1.0905 12 6 2.2176 1.5434 2.4829 13 8 1.6775 0.4832 2.7416 14 7 2.6297 2.3508 3.4803 15 6 3.2932 3.6517 3.3109 16 6 3.5542 4.2201 4.7217 17 1 4.5691 3.9926 5.0474 18 7 3.3100 5.6644 4.7520 19 6 4.3361 6.5375 4.5066 20 1 5.3253 6.1614 4.2912 21 6 4.1049 7.9059 4.5358 22 7 5.0912 8.7451 4.3005 23 14 2.3940 8.5563 4.9091 24 1 2.2473 8.7514 6.3739 25 1 2.1953 9.8538 4.2147 26 1 1.3794 7.5809 4.4356 27 6 2.5157 3.4694 5.5965 28 6 2.4907 2.0751 4.9219 29 1 3.3249 1.4684 5.2742 30 6 1.1620 1.3709 5.2037 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8892 0.9074 -2.9416 35 1 2.7543 2.6092 -4.4699 36 1 3.7977 4.6547 -3.5909 37 1 3.9865 5.0198 -1.1723 38 1 2.6458 4.3281 2.7526 39 1 4.2378 3.5228 2.7826 40 1 2.4217 6.0021 4.9459 41 1 4.9296 9.7014 4.3205 42 1 2.8545 3.3975 6.6300 43 1 1.5382 3.9483 5.5398 44 1 0.3419 1.9710 4.8094 45 1 1.1602 0.3926 4.7231 46 1 1.0373 1.2474 6.2795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989302715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:27 Heat of formation + Delta-G solvation = -29.149937 kcal Electronic energy + Delta-G solvation = -30708.559741 eV Core-core repulsion = 26565.353220 eV Total energy + Delta-G solvation = -4143.206521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.69854 -41.27351 -39.61384 -38.99316 -38.65994 -36.13568 -33.60016 -33.30931 -33.06976 -31.43631 -30.69330 -30.42796 -28.14121 -26.77916 -25.94784 -25.16833 -23.83905 -23.03239 -22.25236 -21.96823 -20.68951 -19.74964 -19.16547 -18.72995 -18.03966 -17.59046 -17.50135 -16.88919 -16.65437 -16.31877 -16.09331 -15.91754 -15.63898 -15.62329 -15.17529 -14.97446 -14.83589 -14.68082 -14.48990 -14.01571 -13.74610 -13.55449 -13.36330 -13.21613 -13.09923 -13.01879 -12.91291 -12.85314 -12.43745 -12.21959 -12.14965 -12.04518 -11.85642 -11.64038 -11.29317 -11.09457 -11.08387 -10.93808 -9.90789 -9.76469 -9.41755 -9.28612 -8.03251 -5.39097 -0.69890 0.23119 0.56299 1.24826 1.38619 1.40928 1.47569 1.78149 1.82402 2.41127 2.47277 2.63371 3.01115 3.25635 3.45021 3.60206 3.66837 3.73776 3.76691 3.94658 4.08833 4.16034 4.20133 4.22180 4.31649 4.35045 4.37264 4.38127 4.43823 4.50525 4.66816 4.68307 4.75601 4.80720 4.90090 5.03375 5.05729 5.10000 5.15828 5.23852 5.28321 5.38934 5.44261 5.51619 5.75366 5.90541 6.17673 6.19688 6.23127 6.80696 7.04449 7.77624 7.96981 9.17650 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009640 B = 0.004032 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.875228 B = 6942.398216 C = 9209.031691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.095 3.905 4 C -0.177 4.177 5 C -0.060 4.060 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.130 4.130 9 C 0.052 3.948 10 O -0.183 6.183 11 C -0.070 4.070 12 C 0.606 3.394 13 O -0.529 6.529 14 N -0.599 5.599 15 C 0.091 3.909 16 C 0.171 3.829 17 H 0.077 0.923 18 N -0.737 5.737 19 C -0.235 4.235 20 H 0.062 0.938 21 C -0.054 4.054 22 N -0.979 5.979 23 Si 0.950 3.050 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.256 1.256 27 C -0.126 4.126 28 C 0.134 3.866 29 H 0.093 0.907 30 C -0.151 4.151 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.150 0.850 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.140 0.860 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.368 0.632 41 H 0.258 0.742 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -16.352 -12.458 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.046 3.954 4 C -0.178 4.178 5 C -0.077 4.077 6 C -0.145 4.145 7 C -0.082 4.082 8 C -0.148 4.148 9 C 0.005 3.995 10 O -0.085 6.085 11 C -0.121 4.121 12 C 0.394 3.606 13 O -0.409 6.409 14 N -0.331 5.331 15 C -0.034 4.034 16 C 0.061 3.939 17 H 0.095 0.905 18 N -0.379 5.379 19 C -0.366 4.366 20 H 0.080 0.920 21 C -0.246 4.246 22 N -0.629 5.629 23 Si 0.777 3.223 24 H -0.200 1.200 25 H -0.225 1.225 26 H -0.181 1.181 27 C -0.164 4.164 28 C 0.032 3.968 29 H 0.111 0.889 30 C -0.209 4.209 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.190 0.810 36 H 0.192 0.808 37 H 0.158 0.842 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.834 -16.833 -12.188 22.991 hybrid contribution -0.637 1.113 0.219 1.301 sum -10.471 -15.719 -11.970 22.361 Atomic orbital electron populations 1.23251 0.76227 1.05323 1.00908 1.85882 1.22087 1.20994 1.93413 1.19615 0.98730 0.87355 0.89660 1.20164 1.06842 0.95298 0.95541 1.20677 0.97743 1.00536 0.88788 1.21306 0.98364 0.93077 1.01791 1.21553 0.95505 0.98250 0.92861 1.20459 1.03587 0.98550 0.92220 1.20145 1.00907 0.97507 0.80976 1.84321 1.66958 1.35447 1.21780 1.22218 1.06962 0.87926 0.94976 1.16184 0.79319 0.83475 0.81573 1.90820 1.44972 1.22823 1.82255 1.48535 1.57408 1.20109 1.07061 1.22940 0.96350 0.82745 1.01413 1.21329 0.98859 0.82494 0.91258 0.90542 1.42653 1.08663 1.01295 1.85278 1.19036 0.90619 0.87766 1.39199 0.92031 1.25421 1.00920 0.96095 1.02208 1.69871 1.33016 1.02223 1.57788 0.85501 0.80931 0.77630 0.78237 1.20048 1.22468 1.18082 1.23169 0.99737 0.93118 1.00412 1.22156 0.99978 0.96983 0.77642 0.88874 1.22050 0.94559 1.01147 1.03132 0.94430 0.91878 0.85783 0.83197 0.80965 0.80813 0.84186 0.92486 0.92577 0.79781 0.93265 0.87060 0.90429 0.93633 0.91346 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 11.13 113.37 1.26 2.02 16 2 O -0.31 -8.99 9.75 -77.18 -0.75 -9.74 16 3 C 0.09 2.99 6.52 24.10 0.16 3.14 16 4 C -0.18 -4.89 6.38 -20.17 -0.13 -5.02 16 5 C -0.06 -1.15 10.05 22.22 0.22 -0.93 16 6 C -0.13 -1.82 9.98 22.04 0.22 -1.60 16 7 C -0.06 -1.03 10.01 22.30 0.22 -0.80 16 8 C -0.13 -3.11 10.07 22.36 0.23 -2.89 16 9 C 0.05 1.59 7.39 23.04 0.17 1.76 16 10 O -0.18 -6.45 8.08 -16.28 -0.13 -6.58 16 11 C -0.07 -2.45 6.91 23.96 0.17 -2.28 16 12 C 0.61 21.22 7.58 86.31 0.65 21.88 16 13 O -0.53 -19.14 13.91 6.91 0.10 -19.04 16 14 N -0.60 -19.61 3.24 -793.35 -2.57 -22.18 16 15 C 0.09 3.30 5.28 86.73 0.46 3.75 16 16 C 0.17 6.10 3.61 46.18 0.17 6.27 16 17 H 0.08 2.78 8.09 -2.39 -0.02 2.76 16 18 N -0.74 -32.53 4.95 -317.32 -1.57 -34.10 16 19 C -0.24 -12.84 10.44 84.03 0.88 -11.96 16 20 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 21 C -0.05 -3.10 5.50 84.86 0.47 -2.63 16 22 N -0.98 -61.08 13.97 21.65 0.30 -60.78 16 23 Si 0.95 44.08 27.74 68.60 1.90 45.98 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.26 -10.84 6.52 99.48 0.65 -10.19 16 27 C -0.13 -3.41 6.13 31.99 0.20 -3.21 16 28 C 0.13 3.60 3.77 45.47 0.17 3.77 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 C -0.15 -3.67 8.59 71.98 0.62 -3.06 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.06 2.28 7.52 -2.39 -0.02 2.26 16 39 H 0.06 2.13 7.76 -2.39 -0.02 2.11 16 40 H 0.37 15.67 5.62 -92.71 -0.52 15.15 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.08 2.11 7.92 -2.39 -0.02 2.09 16 44 H 0.04 1.17 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.89 6.09 -2.39 -0.01 1.88 16 46 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -73.42 380.32 3.83 -69.59 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.43 Total: 28.64 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.13 Total: 8.22 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -3.84 Total: -117.06 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.79 Total: -35.37 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Total: -73.42 3.83 -69.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989302715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.443 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds