Wall clock time and date at job start Wed Apr 1 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35565 * 117.00085 * 2 1 4 4 C 1.46695 * 127.03743 * 270.14203 * 3 2 1 5 5 C 1.39569 * 134.08670 * 0.02562 * 4 3 2 6 6 C 1.36669 * 119.73224 * 180.32372 * 5 4 3 7 7 C 1.38800 * 120.41327 * 0.02562 * 6 5 4 8 8 C 1.37804 * 120.71495 * 0.02562 * 7 6 5 9 9 C 1.39048 * 119.86526 * 359.96690 * 8 7 6 10 10 O 1.34769 * 133.06748 * 180.02562 * 9 8 7 11 11 C 1.35219 * 110.96317 * 180.02562 * 10 9 8 12 12 C 1.46183 * 125.23258 * 180.02562 * 11 10 9 13 13 O 1.21764 * 120.00529 * 180.02562 * 12 11 10 14 14 N 1.34777 * 120.00286 * 0.02562 * 12 11 10 15 15 C 1.47422 * 125.64361 * 359.94786 * 14 12 11 16 16 C 1.54906 * 104.83284 * 204.17309 * 15 14 12 17 17 H 1.09000 * 111.03945 * 204.89940 * 16 15 14 18 18 N 1.46504 * 111.00538 * 81.06220 * 16 15 14 19 19 C 1.36943 * 119.99781 * 92.80655 * 18 16 15 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 16 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.55153 * 101.58297 * 322.99022 * 16 15 14 28 28 C 1.47023 * 125.65309 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.88266 * 59.47387 * 28 14 12 30 30 C 1.53003 * 109.87964 * 298.31322 * 28 14 12 31 31 H 1.08994 * 109.47185 * 300.00166 * 1 2 3 32 32 H 1.09008 * 109.46809 * 59.99885 * 1 2 3 33 33 H 1.08995 * 109.47385 * 179.97438 * 1 2 3 34 34 H 1.08001 * 120.13563 * 0.34214 * 5 4 3 35 35 H 1.08004 * 119.79400 * 179.97438 * 6 5 4 36 36 H 1.07995 * 119.64359 * 180.02562 * 7 6 5 37 37 H 1.08005 * 120.06584 * 180.02562 * 8 7 6 38 38 H 1.09006 * 110.36998 * 85.33360 * 15 14 12 39 39 H 1.09005 * 110.37180 * 323.01170 * 15 14 12 40 40 H 0.97000 * 120.00410 * 272.80980 * 18 16 15 41 41 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 42 42 H 1.09003 * 110.72723 * 153.86049 * 27 16 15 43 43 H 1.09000 * 110.72556 * 277.13946 * 27 16 15 44 44 H 1.09002 * 109.46729 * 302.19093 * 30 28 14 45 45 H 1.08997 * 109.47153 * 62.19314 * 30 28 14 46 46 H 1.08998 * 109.46547 * 182.19329 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 6 2.4431 1.9965 -1.1710 5 6 2.3419 1.8064 -2.5499 6 6 2.8309 2.7558 -3.4028 7 6 3.4275 3.9063 -2.9059 8 6 3.5377 4.1117 -1.5477 9 6 3.0470 3.1593 -0.6613 10 8 3.0122 3.0856 0.6839 11 6 2.4207 1.9396 1.0905 12 6 2.2185 1.5429 2.4828 13 8 1.6730 0.4855 2.7416 14 7 2.6357 2.3476 3.4803 15 6 3.3082 3.6484 3.3104 16 6 4.1073 3.8559 4.6211 17 1 4.2810 4.9153 4.8100 18 7 5.3721 3.1173 4.5876 19 6 6.5134 3.7335 4.1483 20 1 6.4811 4.7638 3.8262 21 6 7.7106 3.0318 4.1111 22 7 7.7499 1.7760 4.5031 23 14 9.2659 3.8700 3.5046 24 1 9.5640 5.0429 4.3652 25 1 10.3994 2.9126 3.5635 26 1 9.0708 4.3213 2.1033 27 6 3.1398 3.2545 5.6743 28 6 2.4970 2.0728 4.9179 29 1 3.0132 1.1464 5.1697 30 6 1.0160 1.9634 5.2862 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8787 0.9128 -2.9415 35 1 2.7535 2.6095 -4.4700 36 1 3.8094 4.6486 -3.5910 37 1 4.0035 5.0110 -1.1725 38 1 2.5721 4.4426 3.1851 39 1 3.9835 3.6177 2.4552 40 1 5.4011 2.1918 4.8765 41 1 8.5865 1.2859 4.4774 42 1 3.6903 2.9003 6.5460 43 1 2.3838 3.9840 5.9647 44 1 0.5046 2.8864 5.0131 45 1 0.5688 1.1274 4.7486 46 1 0.9198 1.7985 6.3594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989302721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:51 Heat of formation + Delta-G solvation = -14.559505 kcal Electronic energy + Delta-G solvation = -31007.518109 eV Core-core repulsion = 26864.944276 eV Total energy + Delta-G solvation = -4142.573833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52621 -39.78858 -38.38486 -37.96832 -37.21482 -34.00307 -32.16035 -31.83685 -31.32718 -30.44200 -29.40613 -28.45303 -27.08468 -25.50427 -24.54086 -23.69726 -22.82727 -21.99066 -21.09972 -20.05343 -19.30784 -18.12099 -17.63188 -17.25904 -16.66668 -16.38843 -16.07788 -15.56618 -15.19447 -14.96591 -14.83319 -14.65266 -14.45183 -13.91278 -13.88768 -13.69532 -13.41219 -13.23957 -12.84612 -12.75386 -12.38874 -12.24931 -12.22143 -11.94655 -11.86801 -11.65787 -11.25969 -11.17925 -10.94199 -10.74857 -10.63850 -10.34920 -10.15898 -10.04882 -9.98074 -9.80179 -9.72092 -9.04429 -8.78531 -8.43943 -8.10413 -7.04484 -5.81586 -3.12345 0.46982 1.20769 1.67770 2.44711 3.18037 3.24993 3.41013 3.45427 3.47061 3.50900 3.67151 4.30483 4.53756 4.62965 4.76362 4.87004 5.00684 5.09452 5.12369 5.17789 5.20681 5.27037 5.30422 5.35196 5.47301 5.51536 5.58252 5.61956 5.64770 5.79214 5.82998 5.85655 5.98750 6.05415 6.12938 6.20055 6.26447 6.26933 6.35492 6.40834 6.43517 6.57867 6.67397 6.79299 6.95739 7.36695 7.64092 7.75655 8.28485 8.35363 9.47128 10.01699 10.36299 11.40308 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008676 B = 0.004505 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.695514 B = 6214.324655 C = 8375.009806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.289 6.289 3 C 0.082 3.918 4 C -0.156 4.156 5 C -0.056 4.056 6 C -0.141 4.141 7 C -0.084 4.084 8 C -0.107 4.107 9 C 0.077 3.923 10 O -0.161 6.161 11 C -0.021 4.021 12 C 0.607 3.393 13 O -0.518 6.518 14 N -0.585 5.585 15 C 0.066 3.934 16 C 0.169 3.831 17 H 0.077 0.923 18 N -0.711 5.711 19 C -0.249 4.249 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.928 5.928 23 Si 0.907 3.093 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.139 4.139 28 C 0.138 3.862 29 H 0.079 0.921 30 C -0.160 4.160 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.002 3.944 -10.850 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.034 3.966 4 C -0.157 4.157 5 C -0.075 4.075 6 C -0.159 4.159 7 C -0.103 4.103 8 C -0.125 4.125 9 C 0.029 3.971 10 O -0.062 6.062 11 C -0.072 4.072 12 C 0.395 3.605 13 O -0.397 6.397 14 N -0.316 5.316 15 C -0.060 4.060 16 C 0.057 3.943 17 H 0.094 0.906 18 N -0.350 5.350 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.575 5.575 23 Si 0.737 3.263 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.178 4.178 28 C 0.036 3.964 29 H 0.097 0.903 30 C -0.218 4.218 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.220 0.780 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.954 3.453 -10.593 19.460 hybrid contribution 0.853 0.128 -0.473 0.984 sum -15.101 3.581 -11.066 19.061 Atomic orbital electron populations 1.23023 0.78464 1.03483 1.00527 1.85974 1.20075 1.21145 1.93250 1.19337 1.00371 0.87723 0.89168 1.19979 1.05563 0.95682 0.94471 1.20295 0.97944 0.99085 0.90129 1.20780 1.00716 0.94511 0.99932 1.20999 0.97843 0.97659 0.93752 1.20069 1.02609 0.98711 0.91129 1.19637 0.99581 0.96238 0.81680 1.84405 1.65584 1.36003 1.20190 1.22258 1.03223 0.86902 0.94812 1.16029 0.79881 0.83490 0.81149 1.90875 1.44504 1.22245 1.82048 1.48307 1.56572 1.20909 1.05809 1.23627 0.95718 0.82790 1.03873 1.21340 0.86300 0.96552 0.90154 0.90557 1.42335 1.02457 1.13042 1.77185 1.19182 0.86491 0.95808 1.36500 0.90998 1.24760 0.97941 0.95988 1.01695 1.69650 1.26310 1.08778 1.52761 0.86283 0.83056 0.78267 0.78648 1.21128 1.21667 1.21201 1.23106 0.98874 0.96704 0.99098 1.21569 0.96048 0.99586 0.79222 0.90327 1.22140 0.95786 1.02322 1.01528 0.93040 0.93842 0.88449 0.85381 0.85172 0.84540 0.84355 0.92450 0.89179 0.77997 0.93299 0.89532 0.90628 0.92789 0.91568 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.13 101.05 1.12 1.60 16 2 O -0.29 -4.80 9.75 -30.35 -0.30 -5.10 16 3 C 0.08 1.42 6.52 -36.76 -0.24 1.18 16 4 C -0.16 -2.35 6.38 -105.10 -0.67 -3.03 16 5 C -0.06 -0.67 10.05 -39.65 -0.40 -1.07 16 6 C -0.14 -1.37 9.98 -39.94 -0.40 -1.77 16 7 C -0.08 -0.82 10.01 -39.53 -0.40 -1.22 16 8 C -0.11 -1.30 10.07 -39.44 -0.40 -1.70 16 9 C 0.08 1.19 7.39 -38.39 -0.28 0.90 16 10 O -0.16 -2.81 7.68 1.83 0.01 -2.80 16 11 C -0.02 -0.39 6.89 -36.98 -0.25 -0.64 16 12 C 0.61 11.80 7.59 -13.07 -0.10 11.71 16 13 O -0.52 -10.75 15.24 -6.82 -0.10 -10.86 16 14 N -0.58 -10.62 3.06 -164.71 -0.50 -11.12 16 15 C 0.07 1.16 5.83 -2.53 -0.01 1.15 16 16 C 0.17 3.14 3.72 -65.78 -0.24 2.90 16 17 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 18 N -0.71 -17.16 5.23 -51.35 -0.27 -17.43 16 19 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.14 -2.12 6.07 -24.90 -0.15 -2.27 16 28 C 0.14 2.27 3.45 -66.95 -0.23 2.04 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 C -0.16 -2.19 9.10 37.16 0.34 -1.85 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.82 6.18 -51.93 -0.32 1.50 16 40 H 0.39 10.19 7.86 -40.82 -0.32 9.87 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.01 6.90 -51.93 -0.36 0.65 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -33.08 384.96 -8.67 -41.75 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.45 Total: 9.10 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.56 Total: 0.80 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.05 Total: -55.77 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.39 Total: -18.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.08 -8.67 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989302721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds