Wall clock time and date at job start Wed Apr 1 2020 02:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 H 1.09002 * 110.64274 * 36.68138 * 7 6 4 9 9 C 1.54324 * 110.71867 * 273.54063 * 7 6 4 10 10 N 1.47018 * 107.27515 * 219.44135 * 9 7 6 11 11 C 1.36932 * 125.65101 * 178.90466 * 10 9 7 12 12 H 1.08003 * 120.00047 * 0.02562 * 11 10 9 13 13 C 1.38818 * 119.99953 * 179.97438 * 11 10 9 14 14 N 1.31614 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99802 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47026 * 90.00489 * 15 13 11 17 17 H 1.48500 * 109.46920 * 210.00246 * 15 13 11 18 18 H 1.48508 * 109.47306 * 330.00285 * 15 13 11 19 19 C 1.47427 * 108.69893 * 358.94270 * 10 9 7 20 20 C 1.54904 * 104.83424 * 24.12757 * 19 10 9 21 21 H 1.09007 * 111.00420 * 81.06235 * 20 19 10 22 22 O 1.42897 * 111.00616 * 204.91295 * 20 19 10 23 23 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 24 24 C 1.33989 * 124.92148 * 119.99906 * 23 2 1 25 25 C 1.46788 * 106.18451 * 179.97438 * 24 23 2 26 26 C 1.39400 * 134.37227 * 179.97438 * 25 24 23 27 27 C 1.36745 * 119.71745 * 179.97438 * 26 25 24 28 28 C 1.38742 * 120.41629 * 0.02562 * 27 26 25 29 29 C 1.37854 * 120.68575 * 0.02562 * 28 27 26 30 30 C 1.38947 * 119.81598 * 359.97438 * 29 28 27 31 31 O 1.34450 * 124.92055 * 299.70040 * 23 2 1 32 32 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 33 33 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 35 35 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 36 36 H 1.08994 * 109.88217 * 338.86515 * 9 7 6 37 37 H 1.09007 * 109.87920 * 100.02710 * 9 7 6 38 38 H 0.97000 * 120.00072 * 179.97438 * 14 13 11 39 39 H 1.09005 * 110.36516 * 142.96384 * 19 10 9 40 40 H 1.09001 * 110.36870 * 265.28517 * 19 10 9 41 41 H 0.96697 * 114.00591 * 292.19531 * 22 20 19 42 42 H 1.07995 * 126.91360 * 359.96766 * 24 23 2 43 43 H 1.08005 * 120.14407 * 359.97438 * 26 25 24 44 44 H 1.08000 * 119.79088 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.65704 * 180.02562 * 28 27 26 46 46 H 1.07991 * 120.08732 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 1 3.2068 -1.3145 3.4922 9 6 1.2436 -2.0892 4.0453 10 7 1.1492 -2.0936 5.5124 11 6 0.3851 -2.9489 6.2605 12 1 -0.2163 -3.7022 5.7733 13 6 0.3844 -2.8486 7.6450 14 7 1.1176 -1.9310 8.2387 15 14 -0.6574 -4.0160 8.6654 16 1 0.1380 -5.2240 9.0016 17 1 -1.0797 -3.3372 9.9169 18 1 -1.8589 -4.4147 7.8889 19 6 2.0127 -1.0238 6.0449 20 6 2.1400 -0.0034 4.8864 21 1 1.2680 0.6493 4.8430 22 8 3.3426 0.7592 5.0053 23 6 2.0324 -0.7104 -1.2304 24 6 2.8060 -0.1565 -2.1738 25 6 3.0477 -1.2049 -3.1724 26 6 3.7593 -1.2655 -4.3696 27 6 3.7862 -2.4313 -5.0839 28 6 3.1098 -3.5522 -4.6246 29 6 2.4000 -3.5108 -3.4436 30 6 2.3598 -2.3362 -2.7025 31 8 1.7741 -1.9936 -1.5377 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.1492 0.5389 2.5435 36 1 0.2584 -1.9201 3.6109 37 1 1.6464 -3.0403 3.6970 38 1 1.1168 -1.8606 9.2062 39 1 1.5466 -0.5566 6.9124 40 1 2.9923 -1.4228 6.3083 41 1 3.3544 1.3594 5.7633 42 1 3.1771 0.8575 -2.1954 43 1 4.2871 -0.3955 -4.7315 44 1 4.3368 -2.4794 -6.0117 45 1 3.1397 -4.4667 -5.1984 46 1 1.8774 -4.3892 -3.0949 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077970643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:48 Heat of formation + Delta-G solvation = -23.267259 kcal Electronic energy + Delta-G solvation = -29626.841658 eV Core-core repulsion = 25483.890229 eV Total energy + Delta-G solvation = -4142.951429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60772 -39.88178 -38.15081 -37.74803 -35.11886 -34.51944 -34.01729 -32.54619 -31.62373 -30.55045 -28.95458 -28.33227 -27.03574 -25.10687 -24.35514 -23.10094 -22.23378 -21.43057 -20.75604 -20.30158 -19.83097 -17.66217 -17.48669 -17.10952 -16.88267 -16.46932 -16.16500 -15.86767 -15.38322 -15.09083 -14.72030 -14.31295 -14.18045 -14.02441 -13.72145 -13.51946 -13.29940 -13.18866 -12.91694 -12.70307 -12.40422 -12.31186 -12.22626 -12.00660 -11.88240 -11.76264 -11.53095 -11.29010 -11.08498 -11.01317 -10.85440 -10.28518 -10.20608 -9.96005 -9.80881 -9.74930 -9.30315 -8.83673 -8.75462 -8.74324 -8.29404 -6.94686 -5.74671 -3.16993 0.73948 1.22053 2.15491 2.54837 2.70129 3.24954 3.36573 3.41748 3.43277 3.56405 4.04816 4.36685 4.48872 4.57711 4.59618 4.69163 4.74761 4.77216 4.94244 5.03855 5.12468 5.23178 5.24517 5.38290 5.39344 5.43382 5.53735 5.58231 5.63388 5.68920 5.82243 5.84980 6.04104 6.06493 6.08971 6.15988 6.25117 6.26425 6.43118 6.50548 6.65766 6.87855 7.09611 7.28589 7.49414 7.60341 7.69771 8.05848 8.22236 8.32180 9.11573 9.71960 10.34239 11.29713 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.002305 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.523714 B =12145.935549 C =12973.196153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 H 0.129 0.871 4 C 0.515 3.485 5 O -0.524 6.524 6 N -0.711 5.711 7 C 0.143 3.857 8 H 0.099 0.901 9 C 0.130 3.870 10 N -0.600 5.600 11 C -0.222 4.222 12 H 0.080 0.920 13 C -0.011 4.011 14 N -0.925 5.925 15 Si 0.918 3.082 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.129 3.871 20 C 0.068 3.932 21 H 0.062 0.938 22 O -0.566 6.566 23 C 0.071 3.929 24 C -0.209 4.209 25 C -0.129 4.129 26 C -0.073 4.073 27 C -0.139 4.139 28 C -0.098 4.098 29 C -0.105 4.105 30 C 0.057 3.943 31 O -0.174 6.174 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.398 0.602 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.253 0.747 39 H 0.113 0.887 40 H 0.026 0.974 41 H 0.378 0.622 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.133 0.867 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 8.121 -22.871 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 H 0.146 0.854 4 C 0.299 3.701 5 O -0.399 6.399 6 N -0.362 5.362 7 C 0.038 3.962 8 H 0.117 0.883 9 C 0.003 3.997 10 N -0.328 5.328 11 C -0.350 4.350 12 H 0.098 0.902 13 C -0.206 4.206 14 N -0.573 5.573 15 Si 0.748 3.252 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.206 1.206 19 C 0.004 3.996 20 C 0.007 3.993 21 H 0.080 0.920 22 O -0.371 6.371 23 C 0.023 3.977 24 C -0.228 4.228 25 C -0.129 4.129 26 C -0.091 4.091 27 C -0.158 4.158 28 C -0.116 4.116 29 C -0.123 4.123 30 C 0.009 3.991 31 O -0.074 6.074 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.044 0.956 41 H 0.225 0.775 42 H 0.175 0.825 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.151 0.849 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.706 6.824 -23.100 24.147 hybrid contribution -0.736 0.146 1.077 1.313 sum 0.970 6.970 -22.023 23.120 Atomic orbital electron populations 1.21829 0.90861 1.04165 1.03530 1.20087 0.98649 0.99355 0.87772 0.85361 1.20201 0.80720 0.84900 0.84238 1.90771 1.37120 1.25569 1.86401 1.45923 1.53355 1.31680 1.05279 1.22027 0.99214 0.92724 0.82220 0.88270 1.21622 0.95936 0.95405 0.86706 1.44293 1.51977 1.37462 0.99066 1.19107 1.18412 1.09229 0.88247 0.90203 1.24803 1.00131 0.99373 0.96336 1.69729 1.43460 1.35510 1.08636 0.86018 0.79595 0.79923 0.79643 1.21505 1.21592 1.20618 1.22552 0.94891 0.87686 0.94506 1.23634 0.85965 0.92819 0.96864 0.91974 1.86411 1.39685 1.58747 1.52230 1.21469 0.98267 0.81918 0.96091 1.22146 1.04789 1.00438 0.95457 1.19915 1.01919 0.93819 0.97289 1.20258 0.97786 0.98397 0.92700 1.20748 1.01361 0.92983 1.00664 1.20903 0.96753 0.98898 0.95065 1.19989 1.02651 0.94956 0.94749 1.19654 0.96980 0.96128 0.86295 1.84001 1.61928 1.27043 1.34440 0.90831 0.91055 0.90594 0.76720 0.95148 0.94849 0.93583 0.86916 0.95648 0.77536 0.82452 0.85668 0.85505 0.84899 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.07 37.16 0.34 -0.95 16 2 C -0.04 -0.41 3.11 -92.92 -0.29 -0.69 16 3 H 0.13 0.96 8.08 -51.93 -0.42 0.54 16 4 C 0.52 7.86 7.15 -10.98 -0.08 7.79 16 5 O -0.52 -10.53 15.49 -2.76 -0.04 -10.57 16 6 N -0.71 -10.34 5.02 -52.03 -0.26 -10.61 16 7 C 0.14 2.67 2.97 -66.10 -0.20 2.48 16 8 H 0.10 2.10 7.69 -51.93 -0.40 1.70 16 9 C 0.13 2.84 6.99 -3.07 -0.02 2.82 16 10 N -0.60 -15.29 3.39 -170.07 -0.58 -15.87 16 11 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 12 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 13 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 14 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 15 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.13 3.05 5.62 -2.53 -0.01 3.03 16 20 C 0.07 1.23 4.04 -24.59 -0.10 1.13 16 21 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 22 O -0.57 -9.42 13.47 -35.23 -0.47 -9.89 16 23 C 0.07 0.94 5.13 -35.80 -0.18 0.75 16 24 C -0.21 -2.47 10.97 -37.62 -0.41 -2.88 16 25 C -0.13 -1.62 6.40 -105.16 -0.67 -2.30 16 26 C -0.07 -0.74 10.05 -39.69 -0.40 -1.14 16 27 C -0.14 -1.23 9.98 -39.94 -0.40 -1.62 16 28 C -0.10 -0.89 10.01 -39.54 -0.40 -1.29 16 29 C -0.11 -1.20 10.07 -39.46 -0.40 -1.60 16 30 C 0.06 0.80 7.42 -38.47 -0.29 0.51 16 31 O -0.17 -2.69 10.23 -4.40 -0.05 -2.73 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.54 7.56 -51.93 -0.39 0.15 16 35 H 0.40 4.45 7.94 -40.82 -0.32 4.13 16 36 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.11 2.89 5.88 -51.93 -0.31 2.59 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.38 4.72 9.12 45.56 0.42 5.13 16 42 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -35.48 384.61 -9.44 -44.91 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.61 Total: 8.49 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.76 Total: -0.65 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.28 Total: -52.15 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.56 Total: -23.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.48 -9.44 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077970643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds