Wall clock time and date at job start Wed Apr 1 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35959 * 117.00311 * 2 1 4 4 C 1.39125 * 119.96186 * 0.02562 * 3 2 1 5 5 C 1.37784 * 120.60608 * 180.02562 * 4 3 2 6 6 C 1.38970 * 120.05155 * 0.02562 * 5 4 3 7 7 O 1.34992 * 133.04337 * 180.02562 * 6 5 4 8 8 C 1.33791 * 111.34243 * 179.97438 * 7 6 5 9 9 C 1.36067 * 109.85796 * 359.75750 * 8 7 6 10 10 C 1.47064 * 127.14130 * 180.02562 * 9 8 7 11 11 O 1.21641 * 120.00247 * 180.43176 * 10 9 8 12 12 N 1.34779 * 119.99409 * 0.43144 * 10 9 8 13 13 C 1.46503 * 119.99584 * 180.02562 * 12 10 9 14 14 H 1.09003 * 110.64186 * 36.68468 * 13 12 10 15 15 C 1.54327 * 110.71994 * 273.54223 * 13 12 10 16 16 N 1.47018 * 107.27270 * 219.44563 * 15 13 12 17 17 C 1.36939 * 125.64966 * 178.90703 * 16 15 13 18 18 H 1.07999 * 120.00107 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99712 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99958 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47231 * 90.00318 * 21 19 17 23 23 H 1.48499 * 109.47508 * 210.00460 * 21 19 17 24 24 H 1.48511 * 109.47194 * 330.00403 * 21 19 17 25 25 C 1.47422 * 108.70139 * 358.94009 * 16 15 13 26 26 C 1.54907 * 104.83400 * 24.12925 * 25 16 15 27 27 H 1.09004 * 111.00183 * 81.06609 * 26 25 16 28 28 C 1.52998 * 111.00377 * 204.91559 * 26 25 16 29 29 C 1.40225 * 119.34032 * 359.97438 * 6 5 4 30 30 C 1.38296 * 119.96096 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46459 * 299.99652 * 1 2 3 33 33 H 1.09001 * 109.47121 * 59.99293 * 1 2 3 34 34 H 1.08001 * 119.69695 * 0.02562 * 4 3 2 35 35 H 1.08004 * 119.97867 * 180.02562 * 5 4 3 36 36 H 1.08003 * 125.06992 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00624 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.88011 * 338.86689 * 15 13 12 39 39 H 1.09004 * 109.88180 * 99.87090 * 15 13 12 40 40 H 0.97004 * 119.99807 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.36705 * 142.97110 * 25 16 15 42 42 H 1.08997 * 110.36475 * 265.17829 * 25 16 15 43 43 H 1.08998 * 109.47525 * 172.19983 * 28 26 25 44 44 H 1.09001 * 109.47124 * 292.19377 * 28 26 25 45 45 H 1.09003 * 109.47113 * 52.19251 * 28 26 25 46 46 H 1.07995 * 120.21112 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2879 2.3777 0.0005 5 6 1.8996 3.6123 0.0000 6 6 3.2864 3.7018 -0.0016 7 8 4.1424 4.7457 -0.0020 8 6 5.4147 4.3320 -0.0032 9 6 5.4587 2.9721 0.0017 10 6 6.6590 2.1224 0.0028 11 8 6.5469 0.9112 -0.0005 12 7 7.8834 2.6860 0.0074 13 6 9.0792 1.8396 0.0079 14 1 8.9217 0.9516 -0.6044 15 6 9.4698 1.4472 1.4484 16 7 10.9368 1.4974 1.5320 17 6 11.6818 1.2370 2.6510 18 1 12.7591 1.3015 2.6096 19 6 11.0524 0.8901 3.8386 20 7 9.7395 0.8109 3.8889 21 14 12.0686 0.5355 5.3653 22 1 12.2701 1.7931 6.1289 23 1 11.3562 -0.4513 6.2161 24 1 13.3876 -0.0171 4.9648 25 6 11.4727 1.8752 0.2116 26 6 10.3164 2.6371 -0.4826 27 1 10.2727 3.6727 -0.1451 28 6 10.4476 2.5640 -2.0052 29 6 4.0508 2.5262 -0.0021 30 6 3.4274 1.2827 -0.0005 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 0.2097 2.3148 0.0014 35 1 1.3009 4.5112 0.0009 36 1 6.2782 4.9808 -0.0034 37 1 7.9728 3.6518 0.0096 38 1 9.0338 2.1526 2.1559 39 1 9.1180 0.4388 1.6663 40 1 9.2997 0.5681 4.7188 41 1 12.3403 2.5251 0.3262 42 1 11.7391 0.9852 -0.3585 43 1 9.5548 2.9849 -2.4675 44 1 11.3227 3.1313 -2.3221 45 1 10.5589 1.5236 -2.3107 46 1 4.0183 0.3787 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080099388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:51 Heat of formation + Delta-G solvation = -36.865468 kcal Electronic energy + Delta-G solvation = -29701.908656 eV Core-core repulsion = 25558.367565 eV Total energy + Delta-G solvation = -4143.541092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.63101 -40.86214 -40.68203 -39.05704 -37.57298 -35.66858 -34.50809 -33.74831 -32.17707 -31.39461 -30.44509 -29.35912 -27.99431 -27.37163 -25.71384 -24.69934 -24.08589 -22.98933 -22.09987 -21.59002 -20.77826 -19.23565 -19.06396 -18.88066 -17.88786 -17.41408 -17.32475 -17.05708 -16.81497 -16.59084 -16.38245 -15.82131 -15.53783 -15.46504 -15.00733 -14.71095 -14.36930 -14.31419 -14.19209 -14.01088 -13.90982 -13.73879 -13.39446 -13.33457 -13.05460 -12.88756 -12.79914 -12.59031 -12.21883 -12.05424 -11.87720 -11.86454 -11.84226 -11.65770 -11.46015 -11.27528 -11.09964 -10.75730 -10.08514 -9.43500 -9.10625 -8.93837 -7.85242 -5.23699 -0.32444 0.21947 0.66070 1.42948 1.46227 1.54968 1.58856 2.03961 2.21490 2.30112 2.48664 2.62220 3.32849 3.39687 3.45583 3.62648 3.69768 3.74923 3.91475 4.05016 4.10644 4.11298 4.19757 4.27160 4.39866 4.43025 4.50146 4.61781 4.69257 4.73281 4.77544 4.87077 4.89264 5.02927 5.07462 5.09121 5.13425 5.17790 5.21894 5.29429 5.32712 5.44309 5.50905 5.61481 5.77637 5.87067 6.15464 6.38331 6.57089 7.04931 7.25128 7.74998 8.38691 9.23611 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012223 B = 0.002727 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.274875 B =10265.086467 C =11330.533111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.341 6.341 3 C 0.117 3.883 4 C -0.170 4.170 5 C -0.047 4.047 6 C -0.003 4.003 7 O -0.172 6.172 8 C 0.117 3.883 9 C -0.272 4.272 10 C 0.582 3.418 11 O -0.586 6.586 12 N -0.693 5.693 13 C 0.138 3.862 14 H 0.069 0.931 15 C 0.189 3.811 16 N -0.628 5.628 17 C -0.240 4.240 18 H 0.090 0.910 19 C -0.073 4.073 20 N -0.954 5.954 21 Si 0.981 3.019 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.265 1.265 25 C 0.131 3.869 26 C -0.090 4.090 27 H 0.100 0.900 28 C -0.130 4.130 29 C -0.077 4.077 30 C -0.145 4.145 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.183 0.817 35 H 0.180 0.820 36 H 0.269 0.731 37 H 0.414 0.586 38 H 0.018 0.982 39 H -0.015 1.015 40 H 0.243 0.757 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.005 12.442 -13.585 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.188 4.188 5 C -0.065 4.065 6 C -0.048 4.048 7 O -0.071 6.071 8 C 0.048 3.952 9 C -0.277 4.277 10 C 0.371 3.629 11 O -0.467 6.467 12 N -0.344 5.344 13 C 0.032 3.968 14 H 0.088 0.912 15 C 0.062 3.938 16 N -0.355 5.355 17 C -0.369 4.369 18 H 0.108 0.892 19 C -0.265 4.265 20 N -0.603 5.603 21 Si 0.809 3.191 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.190 1.190 25 C 0.006 3.994 26 C -0.110 4.110 27 H 0.118 0.882 28 C -0.187 4.187 29 C -0.079 4.079 30 C -0.164 4.164 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.200 0.800 35 H 0.197 0.803 36 H 0.284 0.716 37 H 0.252 0.748 38 H 0.036 0.964 39 H 0.003 0.997 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.124 11.597 -13.399 25.348 hybrid contribution 0.590 -0.883 1.400 1.758 sum -17.534 10.714 -11.999 23.795 Atomic orbital electron populations 1.23454 0.75683 1.05807 1.02986 1.86110 1.24183 1.26548 1.88690 1.18873 0.91034 0.85797 0.97181 1.21405 1.01885 0.89556 1.05986 1.20181 0.87816 0.99758 0.98763 1.19727 0.92792 0.83426 1.08904 1.83870 1.15029 1.33507 1.74675 1.25300 0.85922 0.93127 0.90808 1.20878 0.92152 0.94882 1.19804 1.17523 0.83072 0.86954 0.75307 1.90775 1.87218 1.16604 1.52110 1.45475 1.03996 1.10500 1.74448 1.22060 0.84438 0.93897 0.96396 0.91243 1.21088 0.83977 0.96570 0.92151 1.44740 1.02095 1.81403 1.07215 1.19525 0.90793 1.39006 0.87581 0.89196 1.25768 0.96885 1.02503 1.01353 1.70265 1.08505 1.55545 1.25947 0.85033 0.77768 0.77314 0.78955 1.20761 1.22738 1.18982 1.21881 0.96078 0.96337 0.85090 1.22543 0.92001 0.99369 0.97094 0.88232 1.21668 1.03180 1.02177 0.91713 1.19339 0.91972 0.93959 1.02592 1.19702 0.92631 0.96906 1.07162 0.86762 0.90936 0.90563 0.80035 0.80305 0.71571 0.74798 0.96378 0.99710 0.94816 0.92287 0.95881 0.91133 0.90054 0.93357 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -8.43 10.49 -93.08 -0.98 -9.41 16 3 C 0.12 3.05 6.68 22.50 0.15 3.20 16 4 C -0.17 -2.94 9.01 22.38 0.20 -2.74 16 5 C -0.05 -0.80 10.06 22.34 0.22 -0.58 16 6 C 0.00 -0.06 7.39 22.93 0.17 0.11 16 7 O -0.17 -3.52 10.53 -4.55 -0.05 -3.57 16 8 C 0.12 2.27 11.52 67.31 0.78 3.05 16 9 C -0.27 -8.33 6.31 -18.97 -0.12 -8.45 16 10 C 0.58 22.25 7.80 86.56 0.67 22.93 16 11 O -0.59 -28.95 16.00 -4.16 -0.07 -29.02 16 12 N -0.69 -22.54 5.12 -440.51 -2.26 -24.79 16 13 C 0.14 5.45 2.70 46.18 0.12 5.58 16 14 H 0.07 3.02 7.59 -2.39 -0.02 3.01 16 15 C 0.19 10.10 5.12 86.73 0.44 10.55 16 16 N -0.63 -33.30 3.39 -691.99 -2.35 -35.64 16 17 C -0.24 -13.82 10.28 84.03 0.86 -12.96 16 18 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 19 C -0.07 -4.32 5.49 84.86 0.47 -3.86 16 20 N -0.95 -61.48 10.31 21.65 0.22 -61.26 16 21 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.13 5.20 6.70 86.86 0.58 5.78 16 26 C -0.09 -2.79 3.25 -9.40 -0.03 -2.82 16 27 H 0.10 2.68 8.00 -2.39 -0.02 2.67 16 28 C -0.13 -2.95 9.31 71.98 0.67 -2.28 16 29 C -0.08 -2.45 6.28 -20.09 -0.13 -2.58 16 30 C -0.14 -4.95 9.82 22.49 0.22 -4.73 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 0.63 7.65 -2.38 -0.02 0.61 16 33 H 0.08 0.60 7.66 -2.39 -0.02 0.58 16 34 H 0.18 1.54 6.27 -2.91 -0.02 1.52 16 35 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.27 2.02 7.41 -2.91 -0.02 2.00 16 37 H 0.41 9.30 7.44 -92.71 -0.69 8.61 16 38 H 0.02 1.06 7.27 -2.39 -0.02 1.05 16 39 H -0.02 -1.00 7.50 -2.38 -0.02 -1.02 16 40 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.02 0.92 7.99 -2.39 -0.02 0.91 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 46 H 0.11 4.34 7.53 -2.91 -0.02 4.32 16 Total: -1.00 -91.54 381.40 3.29 -88.26 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.33 Total: 14.35 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.40 Total: 11.50 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -4.38 Total: -121.69 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.09 Total: -41.99 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -91.54 3.29 -88.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080099388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.392 kcal (2) G-P(sol) polarization free energy of solvation -91.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds