Wall clock time and date at job start Wed Apr 1 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 116.99987 * 2 1 4 4 C 1.38329 * 120.05999 * 359.96966 * 3 2 1 5 5 C 1.38611 * 120.58552 * 180.02562 * 4 3 2 6 6 C 1.37870 * 120.25367 * 359.97438 * 5 4 3 7 7 C 1.39190 * 119.72719 * 0.03858 * 6 5 4 8 8 C 1.47664 * 134.22191 * 179.97438 * 7 6 5 9 9 C 1.47062 * 127.13961 * 359.97438 * 8 7 6 10 10 O 1.21655 * 120.00243 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00027 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99910 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.78011 * 323.21238 * 12 11 9 14 14 C 1.55158 * 110.72351 * 86.45393 * 12 11 9 15 15 C 1.54909 * 101.61642 * 153.88368 * 14 12 11 16 16 N 1.47427 * 104.83281 * 322.96922 * 15 14 12 17 17 C 1.36930 * 125.64624 * 204.16403 * 16 15 14 18 18 H 1.08002 * 119.99784 * 179.97438 * 17 16 15 19 19 C 1.38820 * 120.00266 * 359.97438 * 17 16 15 20 20 N 1.31614 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47699 * 89.99771 * 21 19 17 23 23 H 1.48506 * 109.46953 * 209.99990 * 21 19 17 24 24 H 1.48506 * 109.47233 * 329.99514 * 21 19 17 25 25 C 1.47014 * 108.70101 * 24.13279 * 16 15 14 26 26 H 1.09001 * 109.88533 * 239.52022 * 25 16 15 27 27 C 1.53004 * 109.88282 * 118.51188 * 25 16 15 28 28 C 1.36080 * 105.72098 * 180.24084 * 8 7 6 29 29 O 1.33769 * 109.83105 * 359.60052 * 28 8 7 30 30 C 1.34957 * 111.33718 * 0.42513 * 29 28 8 31 31 H 1.08999 * 109.47504 * 300.00761 * 1 2 3 32 32 H 1.09000 * 109.47001 * 60.00521 * 1 2 3 33 33 H 1.09000 * 109.47303 * 180.02562 * 1 2 3 34 34 H 1.08001 * 119.70804 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.87689 * 180.02562 * 5 4 3 36 36 H 1.07992 * 120.13624 * 180.02562 * 6 5 4 37 37 H 0.97002 * 120.00249 * 0.02562 * 11 9 8 38 38 H 1.09002 * 111.00366 * 35.78886 * 14 12 11 39 39 H 1.09002 * 111.00429 * 271.97948 * 14 12 11 40 40 H 1.09001 * 110.36668 * 81.81066 * 15 14 12 41 41 H 1.09004 * 110.36307 * 204.13193 * 15 14 12 42 42 H 0.96997 * 119.99856 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47092 * 61.44940 * 27 25 16 44 44 H 1.09007 * 109.47223 * 181.45428 * 27 25 16 45 45 H 1.09005 * 109.46875 * 301.44951 * 27 25 16 46 46 H 1.08003 * 125.07692 * 179.72235 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3723 -0.0006 5 6 1.9119 3.6130 -0.0012 6 6 3.2876 3.7039 -0.0006 7 6 4.0560 2.5433 -0.0002 8 6 5.5069 2.2687 0.0000 9 6 6.5973 3.2555 -0.0007 10 8 6.3414 4.4449 -0.0011 11 7 7.8802 2.8423 0.0001 12 6 8.9664 3.8253 0.0000 13 1 8.7057 4.6896 -0.6110 14 6 9.3126 4.2612 1.4483 15 6 10.7945 4.6872 1.3000 16 7 11.3687 3.7279 0.3390 17 6 12.6933 3.3962 0.2373 18 1 13.0149 2.6786 -0.5030 19 6 13.6227 3.9822 1.0857 20 7 13.2308 4.8570 1.9875 21 14 15.4298 3.5301 0.9464 22 1 16.0970 4.4467 -0.0126 23 1 16.0747 3.6524 2.2785 24 1 15.5544 2.1315 0.4628 25 6 10.2834 3.1860 -0.4915 26 1 10.2346 2.1030 -0.3775 27 6 10.5231 3.5440 -1.9596 28 6 5.6256 0.9131 -0.0052 29 8 4.4117 0.3512 0.0004 30 6 3.4380 1.2858 0.0000 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 0.2157 2.3114 -0.0007 35 1 1.3135 4.5121 -0.0012 36 1 3.7671 4.6716 -0.0006 37 1 8.0843 1.8940 0.0008 38 1 9.2136 3.4261 2.1418 39 1 8.6938 5.1020 1.7617 40 1 10.8600 5.7022 0.9080 41 1 11.3074 4.6163 2.2592 42 1 13.8802 5.2662 2.5806 43 1 11.4599 3.0982 -2.2940 44 1 9.7018 3.1614 -2.5658 45 1 10.5784 4.6275 -2.0650 46 1 6.5603 0.3720 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088570236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:58 Heat of formation + Delta-G solvation = -8.700148 kcal Electronic energy + Delta-G solvation = -29470.407590 eV Core-core repulsion = 25328.087838 eV Total energy + Delta-G solvation = -4142.319752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.84302 -39.87277 -39.47974 -37.54268 -37.13198 -34.08868 -32.87611 -31.88385 -30.64655 -30.38824 -29.54877 -28.47615 -27.64430 -25.18962 -24.02460 -23.66488 -22.83303 -22.42436 -20.47293 -20.15526 -19.69117 -18.37891 -18.03723 -17.03963 -16.79121 -16.74811 -16.01591 -15.82407 -15.77894 -15.40245 -15.20365 -14.75803 -14.48081 -14.06538 -13.84743 -13.60505 -13.37859 -13.19153 -12.79871 -12.69462 -12.57183 -12.14631 -12.01967 -11.73848 -11.63804 -11.58587 -11.55613 -11.15037 -10.88093 -10.84668 -10.54712 -10.44005 -10.10575 -10.03556 -9.84176 -9.75190 -9.57044 -8.94484 -8.71492 -8.63825 -8.12921 -6.89218 -5.66812 -3.09836 0.54434 0.98754 1.57395 2.32778 2.77022 3.20045 3.27825 3.38744 3.43907 3.45655 3.55821 4.11084 4.35673 4.45946 4.48119 4.65725 4.73440 4.81683 4.91503 5.01933 5.04696 5.08389 5.20410 5.33408 5.40660 5.52582 5.61851 5.68056 5.79739 5.81836 6.06099 6.10616 6.21773 6.23327 6.28732 6.31312 6.33981 6.48206 6.52610 6.59183 6.72084 6.85147 7.01571 7.09100 7.51012 7.61094 7.68023 7.84257 8.32578 8.37104 9.19056 9.79966 10.43720 11.36435 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.002083 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.185039 B =13438.450451 C =13837.299320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.191 4.191 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.051 4.051 8 C -0.227 4.227 9 C 0.587 3.413 10 O -0.534 6.534 11 N -0.711 5.711 12 C 0.137 3.863 13 H 0.093 0.907 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.595 5.595 17 C -0.221 4.221 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.156 3.844 26 H 0.035 0.965 27 C -0.156 4.156 28 C 0.072 3.928 29 O -0.173 6.173 30 C 0.018 3.982 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.109 0.891 42 H 0.252 0.748 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.377 -8.685 -4.132 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.099 3.901 4 C -0.210 4.210 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.053 4.053 8 C -0.231 4.231 9 C 0.374 3.626 10 O -0.412 6.412 11 N -0.361 5.361 12 C 0.033 3.967 13 H 0.111 0.889 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.568 5.568 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.048 3.952 26 H 0.053 0.947 27 C -0.215 4.215 28 C 0.003 3.997 29 O -0.072 6.072 30 C -0.029 4.029 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.229 0.771 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.127 0.873 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -25.323 -8.244 -4.021 26.933 hybrid contribution 0.937 -0.455 -0.136 1.051 sum -24.386 -8.699 -4.156 26.222 Atomic orbital electron populations 1.23105 0.77931 1.04240 1.01542 1.86146 1.21679 1.26105 1.88845 1.17653 0.86508 0.85572 1.00415 1.20960 0.99899 0.91087 1.09044 1.20884 0.94090 0.97066 0.99065 1.20666 0.92757 0.97966 1.00070 1.19210 0.91088 0.92838 1.02136 1.21065 0.93120 0.93521 1.15421 1.16987 0.81607 0.87406 0.76647 1.90781 1.83725 1.16640 1.50015 1.45905 1.05211 1.10271 1.74732 1.22187 0.85033 0.90997 0.98471 0.88852 1.23404 1.00340 1.00639 0.94854 1.21963 0.86960 0.90889 0.97458 1.44484 1.02199 1.48280 1.37039 1.19012 0.81242 1.19942 1.14680 0.90450 1.24798 0.98220 0.99059 0.98556 1.69793 1.32218 1.31726 1.23103 0.86081 0.84705 0.77832 0.76896 1.21651 1.21683 1.20724 1.20999 0.87437 0.95885 0.90929 0.94711 1.22251 1.00331 1.01614 0.97353 1.24591 0.87316 0.92296 0.95544 1.83891 1.13405 1.35249 1.74650 1.18601 0.87551 0.86708 1.10010 0.92386 0.92395 0.88009 0.84210 0.84713 0.84022 0.77135 0.91982 0.91873 0.96713 0.87296 0.93675 0.92647 0.94301 0.92891 0.76390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.16 10.50 -19.59 -0.21 -3.37 16 3 C 0.14 1.58 6.70 -39.12 -0.26 1.32 16 4 C -0.19 -1.68 9.02 -39.41 -0.36 -2.03 16 5 C -0.09 -0.87 10.03 -39.58 -0.40 -1.26 16 6 C -0.10 -1.18 9.88 -39.36 -0.39 -1.57 16 7 C -0.05 -0.69 6.29 -104.99 -0.66 -1.35 16 8 C -0.23 -2.98 6.31 -103.25 -0.65 -3.63 16 9 C 0.59 9.09 7.80 -12.68 -0.10 9.00 16 10 O -0.53 -10.11 16.01 5.23 0.08 -10.03 16 11 N -0.71 -10.24 5.20 -53.16 -0.28 -10.52 16 12 C 0.14 2.46 2.76 -66.04 -0.18 2.27 16 13 H 0.09 1.80 7.42 -51.93 -0.39 1.41 16 14 C -0.15 -3.01 6.76 -24.58 -0.17 -3.18 16 15 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 16 N -0.59 -14.56 3.13 -162.51 -0.51 -15.07 16 17 C -0.22 -5.91 9.87 -15.06 -0.15 -6.05 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.16 3.04 3.47 -66.90 -0.23 2.80 16 26 H 0.04 0.65 7.69 -51.93 -0.40 0.25 16 27 C -0.16 -2.83 9.15 37.16 0.34 -2.49 16 28 C 0.07 0.72 11.52 29.96 0.35 1.07 16 29 O -0.17 -2.07 10.53 5.29 0.06 -2.01 16 30 C 0.02 0.23 7.33 -38.45 -0.28 -0.05 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 32 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.14 0.78 6.26 -52.49 -0.33 0.46 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.14 1.82 7.53 -52.49 -0.40 1.43 16 37 H 0.39 4.44 7.24 -40.82 -0.30 4.14 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 2.95 5.87 -51.93 -0.31 2.64 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 43 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.22 1.22 7.41 -52.48 -0.39 0.83 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -33.88 380.21 -8.06 -41.94 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.21 Total: 3.25 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.26 Total: -0.76 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.22 Total: -51.45 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.07 Total: -15.41 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.88 -8.06 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088570236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.243 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds