Wall clock time and date at job start Wed Apr 1 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.66347 * 2 1 4 4 C 1.54696 * 110.90913 * 123.32627 * 2 1 3 5 5 C 1.51657 * 101.95389 * 143.66327 * 4 2 1 6 6 C 1.37670 * 132.10331 * 164.38034 * 5 4 2 7 7 C 1.38988 * 119.92474 * 180.91165 * 6 5 4 8 8 N 1.39873 * 120.19644 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99853 * 36.16008 * 8 7 6 10 10 O 1.21384 * 119.99916 * 6.48826 * 9 8 7 11 11 C 1.49326 * 119.99838 * 186.49112 * 9 8 7 12 12 O 1.21361 * 119.99961 * 4.59920 * 11 9 8 13 13 N 1.34776 * 119.99972 * 184.59510 * 11 9 8 14 14 C 1.46500 * 120.00266 * 175.35424 * 13 11 9 15 15 C 1.52994 * 109.47165 * 184.99393 * 14 13 11 16 16 C 1.50700 * 115.54983 * 281.60237 * 15 14 13 17 17 H 1.07995 * 120.00170 * 143.48180 * 16 15 14 18 18 C 1.37880 * 119.99928 * 323.48694 * 16 15 14 19 19 N 1.31519 * 120.00114 * 339.44308 * 18 16 15 20 20 Si 1.86797 * 120.00139 * 159.45015 * 18 16 15 21 21 H 1.48501 * 109.47008 * 89.99662 * 20 18 16 22 22 H 1.48499 * 109.47338 * 209.99604 * 20 18 16 23 23 H 1.48501 * 109.46931 * 330.00024 * 20 18 16 24 24 C 1.53005 * 117.49818 * 135.89846 * 15 14 13 25 25 C 1.53000 * 117.50250 * 67.27663 * 15 14 13 26 26 C 1.38940 * 119.61094 * 359.97438 * 7 6 5 27 27 C 1.37841 * 120.26819 * 359.85244 * 26 7 6 28 28 C 1.38918 * 107.04710 * 344.85160 * 5 4 2 29 29 O 1.36224 * 111.18618 * 358.55116 * 28 5 4 30 30 H 1.09001 * 109.46898 * 181.76481 * 1 2 3 31 31 H 1.08995 * 109.47627 * 301.76536 * 1 2 3 32 32 H 1.09003 * 109.47213 * 61.76758 * 1 2 3 33 33 H 1.09000 * 110.93194 * 25.49783 * 4 2 1 34 34 H 1.08997 * 110.93393 * 261.82856 * 4 2 1 35 35 H 1.08006 * 120.03747 * 0.89394 * 6 5 4 36 36 H 0.96999 * 120.00063 * 216.15600 * 8 7 6 37 37 H 0.96999 * 120.00221 * 355.35542 * 13 11 9 38 38 H 1.09004 * 109.46645 * 304.99072 * 14 13 11 39 39 H 1.08993 * 109.47284 * 64.98988 * 14 13 11 40 40 H 0.96996 * 120.00342 * 185.02033 * 19 18 16 41 41 H 1.08991 * 117.50108 * 359.97438 * 24 15 14 42 42 H 1.09005 * 117.49420 * 145.01844 * 24 15 14 43 43 H 1.09000 * 117.49566 * 214.97756 * 25 15 14 44 44 H 1.09000 * 117.49580 * 359.97105 * 25 15 14 45 45 H 1.07999 * 119.86897 * 179.82842 * 26 7 6 46 46 H 1.07993 * 119.83155 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0820 -0.7939 1.2075 5 6 3.3106 -1.4554 0.6132 6 6 4.4007 -2.0661 1.1911 7 6 5.4122 -2.5820 0.3896 8 7 6.5226 -3.2032 0.9707 9 6 6.3724 -3.9470 2.0846 10 8 5.2612 -4.1754 2.5166 11 6 7.5729 -4.4899 2.7873 12 8 8.6857 -4.1932 2.4048 13 7 7.4205 -5.3095 3.8464 14 6 8.5942 -5.9232 4.4725 15 6 8.1404 -6.8966 5.5622 16 6 7.7240 -6.2649 6.8656 17 1 6.9034 -6.6824 7.4301 18 6 8.3905 -5.1540 7.3373 19 7 9.6020 -4.8808 6.9043 20 14 7.5730 -4.0368 8.5914 21 1 7.9002 -4.5076 9.9613 22 1 8.0678 -2.6479 8.4141 23 1 6.1012 -4.0668 8.3961 24 6 8.8348 -8.2585 5.6267 25 6 7.3953 -8.1569 5.1181 26 6 5.3139 -2.4772 -0.9924 27 6 4.2190 -1.8680 -1.5668 28 6 3.2006 -1.3527 -0.7678 29 8 2.0394 -0.7365 -1.1247 30 1 -0.3633 -1.0272 0.0316 31 1 -0.3634 0.5410 0.8737 32 1 -0.3634 0.4861 -0.9054 33 1 1.3626 -1.5402 1.5446 34 1 2.3562 -0.1235 2.0219 35 1 4.4700 -2.1439 2.2661 36 1 7.4006 -3.0987 0.5721 37 1 6.5338 -5.4931 4.1940 38 1 9.1674 -6.4631 3.7188 39 1 9.2174 -5.1466 4.9157 40 1 10.0994 -4.1422 7.2887 41 1 9.6145 -8.4611 4.8927 42 1 8.9905 -8.6977 6.6121 43 1 6.6042 -8.5294 5.7689 44 1 7.2280 -8.2924 4.0496 45 1 6.0988 -2.8742 -1.6190 46 1 4.1500 -1.7900 -2.6417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120972685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:16 Heat of formation + Delta-G solvation = -43.763602 kcal Electronic energy + Delta-G solvation = -29212.481359 eV Core-core repulsion = 25068.641141 eV Total energy + Delta-G solvation = -4143.840217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47292 -40.51836 -38.69579 -37.44149 -36.80179 -34.67644 -33.42155 -33.20998 -32.31771 -31.27904 -29.45370 -27.14129 -26.72906 -25.59715 -24.06739 -22.48170 -21.96980 -21.64317 -21.25675 -19.94843 -19.46756 -18.43504 -17.79477 -17.30333 -16.95233 -16.23826 -16.03586 -15.65630 -15.41418 -14.86085 -14.67551 -14.49353 -14.20615 -13.91224 -13.78805 -13.69083 -13.39419 -13.20873 -13.17011 -12.80352 -12.75199 -12.64158 -12.33680 -11.78936 -11.72773 -11.69742 -11.40024 -11.32441 -11.03732 -11.01663 -10.89224 -10.54681 -10.36022 -9.96634 -9.69809 -9.36246 -9.22817 -9.04397 -8.88124 -8.49198 -8.06162 -7.90172 -6.21539 -4.19672 0.93583 1.12229 1.78507 2.54787 2.95959 3.19876 3.29816 3.34252 3.38964 3.62529 3.88950 4.17175 4.23889 4.27279 4.57080 4.68728 4.75593 4.81558 4.88167 4.96920 5.01546 5.15456 5.26697 5.34332 5.42812 5.46915 5.56001 5.65832 5.72096 5.79151 5.88983 6.08157 6.15160 6.20909 6.21441 6.39876 6.48715 6.49346 6.58699 6.75959 6.93637 6.95575 7.01113 7.14248 7.26341 7.45456 7.75358 7.84825 8.07412 8.26381 8.50175 8.74930 9.37754 10.80955 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.002479 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.095600 B =11290.504167 C =12296.513338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 H 0.086 0.914 4 C -0.106 4.106 5 C -0.154 4.154 6 C -0.068 4.068 7 C 0.123 3.877 8 N -0.649 5.649 9 C 0.508 3.492 10 O -0.501 6.501 11 C 0.495 3.505 12 O -0.534 6.534 13 N -0.664 5.664 14 C 0.140 3.860 15 C 0.036 3.964 16 C -0.500 4.500 17 H 0.065 0.935 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.190 4.190 25 C -0.209 4.209 26 C -0.106 4.106 27 C -0.119 4.119 28 C 0.090 3.910 29 O -0.303 6.303 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.423 0.577 37 H 0.411 0.589 38 H 0.043 0.957 39 H 0.124 0.876 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.138 0.862 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 9.153 -15.225 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 H 0.104 0.896 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.088 4.088 7 C 0.029 3.971 8 N -0.297 5.297 9 C 0.291 3.709 10 O -0.374 6.374 11 C 0.274 3.726 12 O -0.413 6.413 13 N -0.313 5.313 14 C 0.019 3.981 15 C 0.035 3.965 16 C -0.537 4.537 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.502 5.502 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.228 4.228 25 C -0.246 4.246 26 C -0.126 4.126 27 C -0.138 4.138 28 C 0.044 3.956 29 O -0.218 6.218 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.261 0.739 37 H 0.246 0.754 38 H 0.061 0.939 39 H 0.142 0.858 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.155 0.845 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.331 9.328 -15.322 21.768 hybrid contribution -0.263 0.429 0.854 0.991 sum -12.594 9.757 -14.468 21.521 Atomic orbital electron populations 1.21882 0.92075 1.03554 1.03152 1.23371 0.95745 0.95391 0.83387 0.89614 1.21885 0.94644 0.99411 0.98391 1.20556 0.97170 1.04002 0.93809 1.20234 0.92226 0.95609 1.00735 1.17461 0.89940 0.98119 0.91587 1.43132 1.10773 1.48510 1.27282 1.20778 0.90414 0.78641 0.81058 1.90775 1.26161 1.56143 1.64328 1.19622 0.88308 0.81728 0.82947 1.90738 1.25297 1.58757 1.66526 1.45981 1.13314 1.43599 1.28416 1.21520 0.85650 0.98685 0.92294 1.19124 0.97715 0.84831 0.94801 1.20459 1.17194 1.11428 1.04590 0.91685 1.24975 0.94260 0.97293 0.96430 1.69831 1.08970 1.29714 1.41733 0.86659 0.80443 0.80275 0.81221 1.20525 1.20936 1.19461 1.22951 0.93180 1.06123 1.00556 1.22900 0.95375 1.07662 0.98682 1.20637 0.98541 1.00828 0.92588 1.19974 0.91583 1.02556 0.99681 1.19518 0.87327 0.96021 0.92699 1.86852 1.34224 1.62928 1.37772 0.91363 0.90241 0.91293 0.88783 0.88912 0.84592 0.73905 0.75355 0.93911 0.85826 0.92358 0.91471 0.89965 0.90312 0.91281 0.84460 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.61 37.15 0.36 -0.55 16 2 C 0.08 0.64 4.25 -25.84 -0.11 0.53 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -0.97 6.65 -26.52 -0.18 -1.15 16 5 C -0.15 -1.85 6.27 -104.11 -0.65 -2.50 16 6 C -0.07 -0.92 8.64 -39.51 -0.34 -1.26 16 7 C 0.12 1.57 6.22 -83.65 -0.52 1.05 16 8 N -0.65 -8.71 5.32 -10.25 -0.05 -8.77 16 9 C 0.51 8.42 7.59 -11.64 -0.09 8.33 16 10 O -0.50 -9.09 14.43 5.47 0.08 -9.01 16 11 C 0.50 9.42 7.88 -11.64 -0.09 9.32 16 12 O -0.53 -11.05 16.51 5.49 0.09 -10.96 16 13 N -0.66 -13.48 5.53 -60.78 -0.34 -13.81 16 14 C 0.14 3.18 5.31 -4.04 -0.02 3.16 16 15 C 0.04 0.84 1.71 -155.66 -0.27 0.57 16 16 C -0.50 -12.79 8.98 -34.44 -0.31 -13.10 16 17 H 0.07 1.67 7.90 -52.49 -0.41 1.25 16 18 C 0.07 1.94 5.07 -17.82 -0.09 1.85 16 19 N -0.87 -23.22 11.10 55.43 0.61 -22.61 16 20 Si 0.89 20.19 29.59 -169.99 -5.03 15.16 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.19 -4.09 9.88 -26.73 -0.26 -4.36 16 25 C -0.21 -4.25 9.94 -26.73 -0.27 -4.51 16 26 C -0.11 -1.10 9.94 -39.47 -0.39 -1.49 16 27 C -0.12 -1.24 10.06 -39.32 -0.40 -1.63 16 28 C 0.09 1.06 7.03 -38.93 -0.27 0.78 16 29 O -0.30 -3.39 10.81 -20.46 -0.22 -3.61 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 2.00 6.68 -52.48 -0.35 1.65 16 36 H 0.42 4.88 8.33 -40.82 -0.34 4.54 16 37 H 0.41 8.14 7.96 -40.82 -0.32 7.82 16 38 H 0.04 0.95 7.97 -51.93 -0.41 0.53 16 39 H 0.12 3.21 5.44 -51.93 -0.28 2.93 16 40 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 41 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 42 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -29.52 389.46 -9.21 -38.73 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.32 Total: 13.96 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.90 Total: -4.95 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.22 Total: -45.18 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.52 -9.21 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120972685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.035 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds