Wall clock time and date at job start Wed Apr 1 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47551 * 2 1 4 4 C 1.53002 * 109.46902 * 240.00301 * 2 1 3 5 5 C 1.53006 * 109.46863 * 174.99925 * 4 2 1 6 6 H 1.08992 * 109.47276 * 304.99950 * 5 4 2 7 7 C 1.53002 * 109.46786 * 185.00076 * 5 4 2 8 8 N 1.46504 * 109.47041 * 65.00312 * 5 4 2 9 9 C 1.34775 * 119.99746 * 204.99613 * 8 5 4 10 10 O 1.21612 * 119.99959 * 0.02562 * 9 8 5 11 11 C 1.47324 * 119.99800 * 179.97438 * 9 8 5 12 12 C 1.35403 * 118.73680 * 180.02562 * 11 9 8 13 13 C 1.46480 * 119.22787 * 180.27827 * 12 11 9 14 14 C 1.39405 * 122.08731 * 180.26511 * 13 12 11 15 15 C 1.37923 * 119.48822 * 179.68370 * 14 13 12 16 16 C 1.38759 * 120.71148 * 359.77282 * 15 14 13 17 17 C 1.37998 * 120.73760 * 0.02562 * 16 15 14 18 18 C 1.39148 * 119.54000 * 359.96846 * 17 16 15 19 19 C 1.47043 * 122.07191 * 180.02562 * 18 17 16 20 20 O 1.21626 * 120.34162 * 359.95934 * 19 18 17 21 21 O 1.34405 * 119.31477 * 179.97438 * 19 18 17 22 22 N 1.46507 * 109.47263 * 120.00739 * 2 1 3 23 23 C 1.36943 * 119.99490 * 274.99858 * 22 2 1 24 24 H 1.07994 * 119.99803 * 359.97438 * 23 22 2 25 25 C 1.38812 * 119.99623 * 179.97438 * 23 22 2 26 26 N 1.31611 * 119.99896 * 0.02562 * 25 23 22 27 27 Si 1.86792 * 119.99542 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47784 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46860 * 120.00174 * 27 25 23 30 30 H 1.48507 * 109.47205 * 239.99929 * 27 25 23 31 31 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46883 * 299.99167 * 1 2 3 33 33 H 1.08993 * 109.47147 * 59.99953 * 1 2 3 34 34 H 1.08999 * 109.47066 * 54.99792 * 4 2 1 35 35 H 1.09004 * 109.47256 * 294.99912 * 4 2 1 36 36 H 1.08994 * 109.47648 * 60.00294 * 7 5 4 37 37 H 1.09001 * 109.46907 * 180.02562 * 7 5 4 38 38 H 1.09005 * 109.47250 * 299.99868 * 7 5 4 39 39 H 0.97001 * 120.00148 * 24.99583 * 8 5 4 40 40 H 1.08002 * 120.38190 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.25898 * 359.45756 * 14 13 12 42 42 H 1.08010 * 119.64011 * 179.76035 * 15 14 13 43 43 H 1.07998 * 119.63255 * 179.97438 * 16 15 14 44 44 H 1.08008 * 120.23057 * 179.97438 * 17 16 15 45 45 H 0.96990 * 120.00191 * 94.99610 * 22 2 1 46 46 H 0.97005 * 119.99885 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2249 -2.6242 8 7 4.1537 -1.3342 -0.1825 9 6 5.3748 -0.9912 0.2732 10 8 5.9876 -0.0828 -0.2544 11 6 5.9667 -1.7159 1.4111 12 6 7.1947 -1.3497 1.8484 13 6 7.7961 -2.0669 2.9751 14 6 9.0540 -1.7364 3.4769 15 6 9.5663 -2.4435 4.5445 16 6 8.8414 -3.4746 5.1249 17 6 7.5927 -3.8153 4.6464 18 6 7.0560 -3.1154 3.5702 19 6 5.7310 -3.4311 3.0162 20 8 5.0629 -4.3278 3.4944 21 8 5.2661 -2.7187 1.9756 22 7 2.0184 -0.6908 1.1961 23 6 2.1492 -0.0077 2.3758 24 1 1.8927 1.0403 2.4242 25 6 2.6114 -0.6623 3.5092 26 7 2.9244 -1.9392 3.4500 27 14 2.7905 0.2697 5.1181 28 1 2.3765 1.6822 4.9209 29 1 1.9293 -0.3582 6.1523 30 1 4.2074 0.2258 5.5606 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6053 -0.2617 -2.1370 35 1 1.7516 -1.7715 -1.2057 36 1 3.6264 -0.6885 -3.4659 37 1 5.1508 -1.1484 -2.6699 38 1 3.7722 -2.2740 -2.6702 39 1 3.6647 -2.0585 0.2385 40 1 7.7267 -0.5413 1.3687 41 1 9.6245 -0.9352 3.0309 42 1 10.5423 -2.1920 4.9328 43 1 9.2595 -4.0171 5.9599 44 1 7.0358 -4.6197 5.1041 45 1 2.2490 -1.6319 1.1525 46 1 3.2471 -2.3968 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134460119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:19 Heat of formation + Delta-G solvation = -49.869622 kcal Electronic energy + Delta-G solvation = -31527.014463 eV Core-core repulsion = 27382.909468 eV Total energy + Delta-G solvation = -4144.104994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.24402 -39.44696 -38.41514 -37.32849 -36.78535 -34.28799 -32.96336 -32.25263 -31.25222 -30.88954 -29.49853 -28.46568 -26.36751 -24.88156 -24.41313 -23.59080 -22.01754 -21.78814 -20.36390 -20.00834 -18.73514 -18.32093 -17.27439 -17.11884 -16.16808 -16.10224 -15.88579 -15.22046 -14.82913 -14.52749 -14.37147 -14.33656 -13.90954 -13.82095 -13.57529 -13.30411 -13.03572 -12.88085 -12.69835 -12.55364 -12.22272 -12.08578 -11.93988 -11.78224 -11.72084 -11.67135 -11.22499 -11.02253 -10.85228 -10.70725 -10.40660 -10.25901 -10.17220 -9.94987 -9.87281 -9.62620 -9.45982 -9.12210 -8.94347 -8.54879 -7.90556 -6.88769 -5.67893 -2.97436 0.50868 0.86868 1.95397 2.71624 2.86037 3.40106 3.43601 3.50838 3.52435 3.60121 4.04230 4.24343 4.61321 4.65768 4.69895 4.82605 5.04053 5.14763 5.21829 5.23357 5.37392 5.48618 5.60407 5.66295 5.68233 5.70192 5.84857 5.86686 5.91047 5.94028 5.99696 6.12286 6.23916 6.27882 6.30803 6.31923 6.38627 6.40876 6.52231 6.60910 6.74384 6.85264 6.95387 7.09397 7.59330 7.77300 7.89305 8.09564 8.45154 8.56668 9.57646 10.11316 10.46444 11.50589 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.004895 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.027271 B = 5718.979809 C = 7152.643148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.135 4.135 5 C 0.147 3.853 6 H 0.087 0.913 7 C -0.163 4.163 8 N -0.674 5.674 9 C 0.583 3.417 10 O -0.539 6.539 11 C 0.095 3.905 12 C -0.169 4.169 13 C 0.000 4.000 14 C -0.118 4.118 15 C -0.086 4.086 16 C -0.137 4.137 17 C -0.045 4.045 18 C -0.172 4.172 19 C 0.533 3.467 20 O -0.439 6.439 21 O -0.229 6.229 22 N -0.717 5.717 23 C -0.238 4.238 24 H 0.066 0.934 25 C -0.005 4.005 26 N -0.908 5.908 27 Si 0.887 3.113 28 H -0.282 1.282 29 H -0.293 1.293 30 H -0.295 1.295 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.415 0.585 40 H 0.163 0.837 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.140 0.860 45 H 0.379 0.621 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -2.160 -5.862 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.173 4.173 5 C 0.043 3.957 6 H 0.105 0.895 7 C -0.222 4.222 8 N -0.325 5.325 9 C 0.368 3.632 10 O -0.419 6.419 11 C 0.046 3.954 12 C -0.190 4.190 13 C -0.001 4.001 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.155 4.155 17 C -0.064 4.064 18 C -0.174 4.174 19 C 0.377 3.623 20 O -0.323 6.323 21 O -0.138 6.138 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.084 0.916 25 C -0.202 4.202 26 N -0.556 5.556 27 Si 0.719 3.281 28 H -0.208 1.208 29 H -0.220 1.220 30 H -0.222 1.222 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.254 0.746 40 H 0.180 0.820 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.157 0.843 45 H 0.214 0.786 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.221 -1.919 -5.959 11.985 hybrid contribution -0.055 0.044 1.575 1.576 sum 10.166 -1.874 -4.384 11.228 Atomic orbital electron populations 1.22420 0.99337 1.00729 0.99863 1.20282 0.91773 0.95671 0.86380 0.93445 1.22231 0.93538 1.01905 0.99640 1.20943 0.92925 0.97300 0.84568 0.89476 1.22216 1.01805 1.01076 0.97061 1.45969 1.16786 1.36959 1.32814 1.17223 0.82146 0.82560 0.81254 1.90785 1.62497 1.29997 1.58617 1.21455 0.91031 0.88804 0.94143 1.22114 0.95488 1.03006 0.98361 1.19034 0.94074 0.93160 0.93824 1.21124 0.94554 1.00581 0.97333 1.21315 0.99605 0.94572 0.94940 1.21204 0.94797 0.98613 1.00936 1.21092 0.94707 0.97590 0.92974 1.20459 0.95976 1.00370 1.00596 1.20048 0.84606 0.80351 0.77331 1.90886 1.59447 1.27758 1.54227 1.83540 1.47240 1.39786 1.43238 1.42479 1.77972 1.10226 1.05380 1.19117 1.36885 0.93663 0.87242 0.91628 1.24630 1.02399 0.95924 0.97232 1.69616 1.49908 1.07606 1.28453 0.86420 0.77197 0.79081 0.85381 1.20780 1.22015 1.22234 0.93606 0.92874 0.94669 0.90566 0.91557 0.91797 0.92300 0.92584 0.74569 0.81992 0.84656 0.85283 0.85189 0.84265 0.78605 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 2 C 0.17 3.10 2.89 -67.93 -0.20 2.91 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C -0.13 -1.96 4.43 -26.73 -0.12 -2.08 16 5 C 0.15 2.26 2.58 -67.92 -0.17 2.09 16 6 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 7 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 8 N -0.67 -12.07 3.79 -54.91 -0.21 -12.28 16 9 C 0.58 11.26 7.73 -12.57 -0.10 11.16 16 10 O -0.54 -10.90 15.82 5.27 0.08 -10.81 16 11 C 0.09 1.82 6.86 -36.90 -0.25 1.57 16 12 C -0.17 -2.85 9.52 -37.28 -0.35 -3.20 16 13 C 0.00 -0.01 5.89 -104.92 -0.62 -0.62 16 14 C -0.12 -1.46 9.88 -39.26 -0.39 -1.84 16 15 C -0.09 -0.92 10.01 -39.50 -0.40 -1.32 16 16 C -0.14 -1.57 10.02 -39.48 -0.40 -1.96 16 17 C -0.05 -0.66 9.66 -39.33 -0.38 -1.04 16 18 C -0.17 -3.00 5.90 -104.76 -0.62 -3.62 16 19 C 0.53 11.04 8.00 34.30 0.27 11.32 16 20 O -0.44 -10.00 17.39 -19.36 -0.34 -10.33 16 21 O -0.23 -4.79 8.05 -20.37 -0.16 -4.96 16 22 N -0.72 -16.25 3.84 -53.42 -0.21 -16.45 16 23 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 26 N -0.91 -25.28 11.94 55.49 0.66 -24.62 16 27 Si 0.89 22.49 29.55 -169.99 -5.02 17.47 16 28 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 30 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 7.90 5.84 -40.82 -0.24 7.66 16 40 H 0.16 2.45 7.47 -52.49 -0.39 2.06 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.14 1.92 7.80 -52.48 -0.41 1.51 16 45 H 0.38 8.95 5.70 -40.82 -0.23 8.72 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -30.87 387.40 -8.89 -39.76 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.28 Total: 13.80 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -3.26 Total: 2.59 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.25 Total: -53.35 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.42 Total: -26.11 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.87 -8.89 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134460119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.112 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds