Wall clock time and date at job start Wed Apr 1 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47551 * 2 1 4 4 C 1.53002 * 109.46902 * 240.00301 * 2 1 3 5 5 C 1.53006 * 109.46863 * 174.99925 * 4 2 1 6 6 H 1.08992 * 109.47276 * 304.99950 * 5 4 2 7 7 C 1.53002 * 109.46786 * 185.00076 * 5 4 2 8 8 N 1.46504 * 109.47041 * 65.00312 * 5 4 2 9 9 C 1.34775 * 119.99746 * 204.99613 * 8 5 4 10 10 O 1.21612 * 119.99959 * 0.02562 * 9 8 5 11 11 C 1.47324 * 119.99800 * 179.97438 * 9 8 5 12 12 C 1.35403 * 118.73680 * 180.02562 * 11 9 8 13 13 C 1.46480 * 119.22787 * 180.27827 * 12 11 9 14 14 C 1.39405 * 122.08731 * 180.26511 * 13 12 11 15 15 C 1.37923 * 119.48822 * 179.68370 * 14 13 12 16 16 C 1.38759 * 120.71148 * 359.77282 * 15 14 13 17 17 C 1.37998 * 120.73760 * 0.02562 * 16 15 14 18 18 C 1.39148 * 119.54000 * 359.96846 * 17 16 15 19 19 C 1.47043 * 122.07191 * 180.02562 * 18 17 16 20 20 O 1.21626 * 120.34162 * 359.95934 * 19 18 17 21 21 O 1.34405 * 119.31477 * 179.97438 * 19 18 17 22 22 N 1.46507 * 109.47263 * 120.00739 * 2 1 3 23 23 C 1.36943 * 119.99490 * 274.99858 * 22 2 1 24 24 H 1.07994 * 119.99803 * 359.97438 * 23 22 2 25 25 C 1.38812 * 119.99623 * 179.97438 * 23 22 2 26 26 N 1.31611 * 119.99896 * 0.02562 * 25 23 22 27 27 Si 1.86792 * 119.99542 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47784 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46860 * 120.00174 * 27 25 23 30 30 H 1.48507 * 109.47205 * 239.99929 * 27 25 23 31 31 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46883 * 299.99167 * 1 2 3 33 33 H 1.08993 * 109.47147 * 59.99953 * 1 2 3 34 34 H 1.08999 * 109.47066 * 54.99792 * 4 2 1 35 35 H 1.09004 * 109.47256 * 294.99912 * 4 2 1 36 36 H 1.08994 * 109.47648 * 60.00294 * 7 5 4 37 37 H 1.09001 * 109.46907 * 180.02562 * 7 5 4 38 38 H 1.09005 * 109.47250 * 299.99868 * 7 5 4 39 39 H 0.97001 * 120.00148 * 24.99583 * 8 5 4 40 40 H 1.08002 * 120.38190 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.25898 * 359.45756 * 14 13 12 42 42 H 1.08010 * 119.64011 * 179.76035 * 15 14 13 43 43 H 1.07998 * 119.63255 * 179.97438 * 16 15 14 44 44 H 1.08008 * 120.23057 * 179.97438 * 17 16 15 45 45 H 0.96990 * 120.00191 * 94.99610 * 22 2 1 46 46 H 0.97005 * 119.99885 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2249 -2.6242 8 7 4.1537 -1.3342 -0.1825 9 6 5.3748 -0.9912 0.2732 10 8 5.9876 -0.0828 -0.2544 11 6 5.9667 -1.7159 1.4111 12 6 7.1947 -1.3497 1.8484 13 6 7.7961 -2.0669 2.9751 14 6 9.0540 -1.7364 3.4769 15 6 9.5663 -2.4435 4.5445 16 6 8.8414 -3.4746 5.1249 17 6 7.5927 -3.8153 4.6464 18 6 7.0560 -3.1154 3.5702 19 6 5.7310 -3.4311 3.0162 20 8 5.0629 -4.3278 3.4944 21 8 5.2661 -2.7187 1.9756 22 7 2.0184 -0.6908 1.1961 23 6 2.1492 -0.0077 2.3758 24 1 1.8927 1.0403 2.4242 25 6 2.6114 -0.6623 3.5092 26 7 2.9244 -1.9392 3.4500 27 14 2.7905 0.2697 5.1181 28 1 2.3765 1.6822 4.9209 29 1 1.9293 -0.3582 6.1523 30 1 4.2074 0.2258 5.5606 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6053 -0.2617 -2.1370 35 1 1.7516 -1.7715 -1.2057 36 1 3.6264 -0.6885 -3.4659 37 1 5.1508 -1.1484 -2.6699 38 1 3.7722 -2.2740 -2.6702 39 1 3.6647 -2.0585 0.2385 40 1 7.7267 -0.5413 1.3687 41 1 9.6245 -0.9352 3.0309 42 1 10.5423 -2.1920 4.9328 43 1 9.2595 -4.0171 5.9599 44 1 7.0358 -4.6197 5.1041 45 1 2.2490 -1.6319 1.1525 46 1 3.2471 -2.3968 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134460119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:18 Heat of formation + Delta-G solvation = -67.104165 kcal Electronic energy + Delta-G solvation = -31527.761808 eV Core-core repulsion = 27382.909468 eV Total energy + Delta-G solvation = -4144.852340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.62378 -40.84707 -39.57437 -38.83457 -38.29106 -35.87668 -34.22493 -33.98366 -32.41679 -32.25709 -30.82491 -30.12086 -27.60398 -26.14370 -25.64197 -25.53703 -23.33456 -22.97059 -21.72325 -21.48209 -19.99202 -19.62292 -19.06640 -18.64041 -17.65630 -17.42601 -17.21582 -16.67831 -16.41042 -15.92659 -15.69655 -15.57115 -15.46823 -15.34465 -15.03442 -14.53727 -14.37922 -14.18769 -13.97992 -13.79993 -13.67644 -13.57623 -13.31965 -13.20847 -12.95721 -12.86206 -12.80751 -12.61022 -12.30942 -12.26232 -12.13754 -11.75726 -11.67531 -11.56376 -11.39772 -11.12669 -10.92751 -10.87819 -10.19102 -9.99316 -9.16839 -8.80671 -7.77576 -5.03537 -0.72552 -0.27861 0.73503 1.32020 1.36249 1.40853 1.46197 1.49804 2.06152 2.26991 2.57430 2.81922 2.94359 3.41401 3.52074 3.59744 3.79682 3.88756 3.96510 4.06498 4.16623 4.20965 4.22416 4.37908 4.50469 4.57082 4.59963 4.69289 4.71708 4.84811 4.88066 4.90336 4.93671 5.07682 5.13424 5.15220 5.20607 5.28866 5.32980 5.37375 5.41803 5.57697 5.61820 5.67836 5.78684 6.14913 6.34139 6.43324 6.63462 7.10588 7.46622 8.22256 8.46266 9.37646 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.004895 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.027271 B = 5718.979809 C = 7152.643148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.035 0.965 4 C -0.122 4.122 5 C 0.142 3.858 6 H 0.070 0.930 7 C -0.153 4.153 8 N -0.674 5.674 9 C 0.579 3.421 10 O -0.558 6.558 11 C 0.047 3.953 12 C -0.141 4.141 13 C -0.029 4.029 14 C -0.108 4.108 15 C -0.071 4.071 16 C -0.118 4.118 17 C -0.065 4.065 18 C -0.198 4.198 19 C 0.520 3.480 20 O -0.483 6.483 21 O -0.248 6.248 22 N -0.722 5.722 23 C -0.228 4.228 24 H 0.058 0.942 25 C -0.050 4.050 26 N -0.917 5.917 27 Si 0.927 3.073 28 H -0.274 1.274 29 H -0.301 1.301 30 H -0.305 1.305 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.408 0.592 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.179 0.821 43 H 0.170 0.830 44 H 0.135 0.865 45 H 0.373 0.627 46 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 -1.230 -6.381 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.053 0.947 4 C -0.160 4.160 5 C 0.039 3.961 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.323 5.323 9 C 0.365 3.635 10 O -0.440 6.440 11 C -0.001 4.001 12 C -0.161 4.161 13 C -0.029 4.029 14 C -0.126 4.126 15 C -0.089 4.089 16 C -0.136 4.136 17 C -0.083 4.083 18 C -0.200 4.200 19 C 0.368 3.632 20 O -0.371 6.371 21 O -0.158 6.158 22 N -0.365 5.365 23 C -0.361 4.361 24 H 0.076 0.924 25 C -0.245 4.245 26 N -0.566 5.566 27 Si 0.760 3.240 28 H -0.199 1.199 29 H -0.229 1.229 30 H -0.234 1.234 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.246 0.754 40 H 0.197 0.803 41 H 0.186 0.814 42 H 0.196 0.804 43 H 0.187 0.813 44 H 0.153 0.847 45 H 0.207 0.793 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 12.413 -0.942 -6.531 14.058 hybrid contribution -0.607 -0.193 1.766 1.878 sum 11.806 -1.135 -4.765 12.782 Atomic orbital electron populations 1.22274 0.97865 1.00780 1.00444 1.20524 0.92675 0.95098 0.86421 0.94690 1.22157 0.92824 1.01996 0.98992 1.21145 0.93484 0.96377 0.85134 0.91183 1.22123 1.01037 1.01774 0.96128 1.46091 1.16355 1.36647 1.33239 1.17345 0.82493 0.82407 0.81291 1.90745 1.63028 1.30810 1.59408 1.21591 0.92513 0.90215 0.95759 1.22487 0.94318 1.01883 0.97457 1.19211 0.95840 0.93534 0.94323 1.21599 0.92829 1.00930 0.97212 1.21911 1.00995 0.92728 0.93250 1.21714 0.92881 0.98140 1.00873 1.21291 0.96429 0.97853 0.92747 1.20473 0.94836 1.02337 1.02330 1.20683 0.85746 0.79778 0.77021 1.90822 1.60981 1.29650 1.55669 1.83415 1.48317 1.40364 1.43670 1.42575 1.78152 1.09946 1.05820 1.19223 1.35130 0.93330 0.88431 0.92380 1.25069 1.03779 0.96604 0.99089 1.69744 1.51111 1.08123 1.27622 0.85755 0.76149 0.78694 0.83371 1.19921 1.22921 1.23376 0.93770 0.95327 0.91024 0.86683 0.91052 0.88921 0.93589 0.91725 0.75414 0.80348 0.81428 0.80396 0.81288 0.84701 0.79299 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.49 71.98 0.68 -4.38 16 2 C 0.16 5.83 2.89 44.99 0.13 5.96 16 3 H 0.04 1.36 8.08 -2.39 -0.02 1.34 16 4 C -0.12 -3.33 4.43 30.60 0.14 -3.20 16 5 C 0.14 4.30 2.58 44.99 0.12 4.41 16 6 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 7 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 8 N -0.67 -24.95 3.79 -445.89 -1.69 -26.64 16 9 C 0.58 23.28 7.73 86.63 0.67 23.95 16 10 O -0.56 -23.10 15.82 -4.07 -0.06 -23.17 16 11 C 0.05 1.91 6.86 24.01 0.16 2.07 16 12 C -0.14 -4.81 9.52 23.76 0.23 -4.58 16 13 C -0.03 -0.89 5.89 -20.06 -0.12 -1.01 16 14 C -0.11 -2.28 9.88 22.48 0.22 -2.06 16 15 C -0.07 -1.16 10.01 22.32 0.22 -0.93 16 16 C -0.12 -2.27 10.02 22.34 0.22 -2.04 16 17 C -0.06 -1.87 9.66 22.43 0.22 -1.65 16 18 C -0.20 -7.10 5.90 -19.96 -0.12 -7.22 16 19 C 0.52 23.21 8.00 70.13 0.56 23.77 16 20 O -0.48 -23.93 17.39 19.43 0.34 -23.59 16 21 O -0.25 -11.17 8.05 15.85 0.13 -11.05 16 22 N -0.72 -33.45 3.84 -322.93 -1.24 -34.69 16 23 C -0.23 -12.29 9.93 84.03 0.83 -11.45 16 24 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 25 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 26 N -0.92 -53.50 11.94 21.65 0.26 -53.24 16 27 Si 0.93 47.52 29.55 68.60 2.03 49.54 16 28 H -0.27 -13.49 7.11 99.48 0.71 -12.79 16 29 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 30 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.41 16.35 5.84 -92.71 -0.54 15.81 16 40 H 0.18 5.29 7.47 -2.91 -0.02 5.27 16 41 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 44 H 0.14 3.87 7.80 -2.91 -0.02 3.85 16 45 H 0.37 18.23 5.70 -92.72 -0.53 17.71 16 46 H 0.24 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -73.03 387.40 5.03 -68.00 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: -0.05 Total: 38.46 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.32 Total: 16.37 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -2.67 Total: -114.57 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: 0.40 Total: -57.81 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -73.03 5.03 -68.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134460119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.900 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds