Wall clock time and date at job start Wed Apr 1 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47235 * 2 1 4 4 C 1.52991 * 109.47544 * 240.00233 * 2 1 3 5 5 C 1.53002 * 109.47611 * 176.85605 * 4 2 1 6 6 H 1.09004 * 109.46976 * 54.55913 * 5 4 2 7 7 C 1.52995 * 109.46865 * 294.55933 * 5 4 2 8 8 N 1.46496 * 109.47212 * 174.55954 * 5 4 2 9 9 C 1.36936 * 120.00016 * 205.76593 * 8 5 4 10 10 H 1.08003 * 119.99772 * 4.93179 * 9 8 5 11 11 C 1.38813 * 120.00256 * 184.92757 * 9 8 5 12 12 N 1.31621 * 119.99991 * 183.97924 * 11 9 8 13 13 Si 1.86801 * 119.99847 * 3.98048 * 11 9 8 14 14 H 1.48489 * 109.47298 * 92.55285 * 13 11 9 15 15 H 1.48503 * 109.46797 * 212.55503 * 13 11 9 16 16 H 1.48500 * 109.47172 * 332.54973 * 13 11 9 17 17 N 1.46499 * 109.47158 * 119.99620 * 2 1 3 18 18 C 1.34776 * 120.00560 * 275.22306 * 17 2 1 19 19 O 1.21616 * 119.99754 * 4.57829 * 18 17 2 20 20 C 1.47322 * 120.00254 * 184.57958 * 18 17 2 21 21 C 1.35401 * 118.73780 * 174.76651 * 20 18 17 22 22 C 1.46490 * 119.22830 * 180.28044 * 21 20 18 23 23 C 1.39403 * 122.09154 * 179.97438 * 22 21 20 24 24 C 1.37911 * 119.49201 * 179.97438 * 23 22 21 25 25 C 1.38767 * 120.71143 * 0.04841 * 24 23 22 26 26 C 1.37997 * 120.73557 * 359.97438 * 25 24 23 27 27 C 1.39163 * 119.53833 * 359.97438 * 26 25 24 28 28 C 1.47045 * 122.06675 * 180.02562 * 27 26 25 29 29 O 1.21626 * 120.34239 * 359.95648 * 28 27 26 30 30 O 1.34399 * 119.31256 * 179.97438 * 28 27 26 31 31 H 1.08998 * 109.46744 * 60.00086 * 1 2 3 32 32 H 1.08996 * 109.46837 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47012 * 299.99897 * 1 2 3 34 34 H 1.09002 * 109.46906 * 296.85875 * 4 2 1 35 35 H 1.09002 * 109.47337 * 56.85092 * 4 2 1 36 36 H 1.09004 * 109.47307 * 299.99777 * 7 5 4 37 37 H 1.08999 * 109.47381 * 59.99876 * 7 5 4 38 38 H 1.09000 * 109.47331 * 179.97438 * 7 5 4 39 39 H 0.97002 * 120.00227 * 25.76426 * 8 5 4 40 40 H 0.97002 * 119.99692 * 180.02562 * 12 11 9 41 41 H 0.97007 * 119.99896 * 95.22469 * 17 2 1 42 42 H 1.08000 * 120.38441 * 0.30013 * 21 20 18 43 43 H 1.08000 * 120.25083 * 0.02562 * 23 22 21 44 44 H 1.08000 * 119.64429 * 180.02562 * 24 23 22 45 45 H 1.07992 * 119.63403 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.23210 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5681 -0.6530 -1.2894 6 1 3.9739 -1.0459 -0.3571 7 6 4.0092 0.8014 -1.4648 8 7 4.0632 -1.4524 -2.4127 9 6 5.3247 -1.9834 -2.3718 10 1 5.9251 -1.8807 -1.4799 11 6 5.8319 -2.6536 -3.4765 12 7 7.0127 -3.2314 -3.4108 13 14 4.8387 -2.7353 -5.0565 14 1 5.2242 -1.6077 -5.9424 15 1 5.1107 -4.0221 -5.7461 16 1 3.3916 -2.6414 -4.7369 17 7 2.0184 -0.6905 1.1962 18 6 2.1429 -0.0193 2.3583 19 8 1.7720 1.1363 2.4357 20 6 2.7282 -0.6854 3.5347 21 6 2.9403 0.0424 4.6566 22 6 3.5275 -0.6077 5.8306 23 6 3.7719 0.0845 7.0158 24 6 4.3265 -0.5811 8.0888 25 6 4.6436 -1.9291 7.9996 26 6 4.4103 -2.6330 6.8358 27 6 3.8504 -1.9819 5.7407 28 6 3.5778 -2.6777 4.4743 29 8 3.8411 -3.8590 4.3532 30 8 3.0351 -1.9948 3.4519 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.7235 -1.7638 -1.2215 35 1 1.6315 -0.2409 -2.1383 36 1 3.6033 1.1943 -2.3971 37 1 3.6408 1.3962 -0.6290 38 1 5.0977 0.8501 -1.4930 39 1 3.4974 -1.6056 -3.1856 40 1 7.3672 -3.6994 -4.1829 41 1 2.2522 -1.6310 1.1519 42 1 2.6791 1.0899 4.6856 43 1 3.5280 1.1337 7.0932 44 1 4.5165 -0.0473 9.0082 45 1 5.0776 -2.4330 8.8504 46 1 4.6598 -3.6821 6.7755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134460120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:23 Heat of formation + Delta-G solvation = -56.200137 kcal Electronic energy + Delta-G solvation = -29598.293678 eV Core-core repulsion = 25453.914173 eV Total energy + Delta-G solvation = -4144.379506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03992 -40.06053 -39.04864 -38.08597 -37.19532 -34.90605 -33.61018 -32.34371 -31.80387 -31.29311 -30.07166 -29.08523 -26.43196 -25.56773 -25.04790 -23.63268 -22.65673 -22.14363 -20.93905 -19.84881 -19.40514 -19.07809 -18.06651 -17.52882 -17.06447 -16.72240 -16.28189 -15.83055 -15.22455 -15.00744 -14.91187 -14.66304 -14.40159 -14.35402 -13.99483 -13.63755 -13.46055 -13.28854 -13.23096 -13.06994 -12.62980 -12.57218 -12.36952 -12.22846 -12.00083 -11.80261 -11.73994 -11.34009 -11.02884 -10.95501 -10.65456 -10.59071 -10.55612 -10.22412 -10.17174 -9.97810 -9.64659 -9.57350 -9.21655 -8.93114 -8.58726 -7.25954 -5.75236 -3.10966 -0.13226 0.29895 1.35184 1.90986 2.09442 2.76276 2.90073 3.36724 3.39446 3.41202 3.46302 3.53609 4.05054 4.15938 4.36022 4.57138 4.60001 4.67038 4.69820 4.76632 5.06704 5.10222 5.15503 5.23308 5.29810 5.41579 5.48685 5.53630 5.61564 5.66906 5.74394 5.80179 5.80549 5.85188 5.89666 6.06826 6.13747 6.20271 6.24076 6.31326 6.46172 6.49894 6.76949 6.82209 7.01144 7.06706 7.34771 7.87036 8.02344 8.43811 9.22957 9.95058 10.15149 11.43132 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.002799 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.908635 B = 9999.738838 C =11444.253116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.096 0.904 4 C -0.139 4.139 5 C 0.176 3.824 6 H 0.055 0.945 7 C -0.168 4.168 8 N -0.750 5.750 9 C -0.241 4.241 10 H 0.088 0.912 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.888 3.112 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.278 1.278 17 N -0.698 5.698 18 C 0.576 3.424 19 O -0.518 6.518 20 C 0.058 3.942 21 C -0.129 4.129 22 C -0.012 4.012 23 C -0.108 4.108 24 C -0.080 4.080 25 C -0.126 4.126 26 C -0.044 4.044 27 C -0.171 4.171 28 C 0.526 3.474 29 O -0.441 6.441 30 O -0.268 6.268 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.413 0.587 42 H 0.171 0.829 43 H 0.141 0.859 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 7.934 23.399 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.114 0.886 4 C -0.177 4.177 5 C 0.067 3.933 6 H 0.073 0.927 7 C -0.228 4.228 8 N -0.393 5.393 9 C -0.371 4.371 10 H 0.106 0.894 11 C -0.192 4.192 12 N -0.581 5.581 13 Si 0.719 3.281 14 H -0.212 1.212 15 H -0.219 1.219 16 H -0.205 1.205 17 N -0.348 5.348 18 C 0.361 3.639 19 O -0.397 6.397 20 C 0.011 3.989 21 C -0.150 4.150 22 C -0.013 4.013 23 C -0.126 4.126 24 C -0.098 4.098 25 C -0.144 4.144 26 C -0.062 4.062 27 C -0.173 4.173 28 C 0.371 3.629 29 O -0.326 6.326 30 O -0.180 6.180 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.249 0.751 42 H 0.189 0.811 43 H 0.159 0.841 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.791 7.981 23.207 27.227 hybrid contribution -0.312 -0.566 -1.110 1.284 sum -12.103 7.415 22.097 26.263 Atomic orbital electron populations 1.22181 0.95067 1.02317 1.02545 1.21194 0.93861 0.97869 0.83297 0.88569 1.22268 0.98135 1.01087 0.96231 1.20183 0.90098 0.90724 0.92323 0.92714 1.22473 1.02180 0.98381 0.99734 1.42844 1.15810 1.61691 1.18964 1.19060 0.90107 1.27740 1.00229 0.89371 1.24702 0.96450 1.00293 0.97778 1.69714 1.18025 1.40067 1.30323 0.86499 0.79562 0.77085 0.84982 1.21241 1.21854 1.20489 1.46106 1.64703 1.14972 1.09066 1.17320 0.78902 0.85746 0.81962 1.90864 1.49683 1.15871 1.83234 1.21474 1.00490 0.80557 0.96416 1.22343 1.00496 1.01862 0.90262 1.19020 0.96160 0.91937 0.94176 1.21205 0.99360 1.00492 0.91582 1.21440 0.95274 0.94524 0.98609 1.21333 1.00541 0.94568 0.97983 1.21155 0.93452 1.00709 0.90852 1.20259 1.07075 0.94444 0.95507 1.20338 0.75113 0.85966 0.81476 1.90973 1.47499 1.13020 1.81089 1.83365 1.68358 1.22162 1.44086 0.91337 0.92322 0.92101 0.90899 0.90323 0.93545 0.94137 0.92445 0.80512 0.93098 0.75100 0.81143 0.84132 0.84708 0.84608 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.48 37.16 0.35 -1.36 16 2 C 0.14 1.76 2.39 -67.93 -0.16 1.59 16 3 H 0.10 1.27 5.95 -51.93 -0.31 0.96 16 4 C -0.14 -1.97 4.42 -26.73 -0.12 -2.08 16 5 C 0.18 3.25 2.91 -67.93 -0.20 3.06 16 6 H 0.05 1.07 7.44 -51.93 -0.39 0.69 16 7 C -0.17 -2.94 9.27 37.16 0.34 -2.59 16 8 N -0.75 -17.42 4.90 -53.43 -0.26 -17.68 16 9 C -0.24 -6.81 10.41 -15.06 -0.16 -6.96 16 10 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 12 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 13 Si 0.89 22.23 27.94 -169.99 -4.75 17.48 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.28 -6.45 6.24 56.52 0.35 -6.10 16 17 N -0.70 -8.82 4.36 -54.92 -0.24 -9.06 16 18 C 0.58 7.47 7.71 -12.57 -0.10 7.38 16 19 O -0.52 -7.50 15.83 5.26 0.08 -7.41 16 20 C 0.06 0.70 6.86 -36.90 -0.25 0.44 16 21 C -0.13 -1.29 9.52 -37.27 -0.35 -1.64 16 22 C -0.01 -0.12 5.89 -104.92 -0.62 -0.73 16 23 C -0.11 -0.72 9.88 -39.27 -0.39 -1.11 16 24 C -0.08 -0.44 10.01 -39.51 -0.40 -0.84 16 25 C -0.13 -0.79 10.02 -39.47 -0.40 -1.18 16 26 C -0.04 -0.38 9.66 -39.33 -0.38 -0.76 16 27 C -0.17 -1.86 5.90 -104.76 -0.62 -2.48 16 28 C 0.53 7.19 8.19 34.30 0.28 7.47 16 29 O -0.44 -7.18 17.39 -19.37 -0.34 -7.51 16 30 O -0.27 -3.59 8.99 -20.37 -0.18 -3.78 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.62 6.51 -51.93 -0.34 0.28 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.36 8.24 5.57 -40.82 -0.23 8.01 16 40 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 41 H 0.41 5.19 7.90 -40.82 -0.32 4.87 16 42 H 0.17 1.44 7.48 -52.49 -0.39 1.05 16 43 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 46 H 0.14 1.18 7.80 -52.48 -0.41 0.77 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -34.60 387.99 -8.54 -43.14 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.22 Total: 9.60 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.25 Total: -1.80 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.27 Total: -55.55 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.44 Total: -18.70 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.75 Total: 17.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.60 -8.54 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134460120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.065 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds