Wall clock time and date at job start Wed Apr 1 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47235 * 2 1 4 4 C 1.52991 * 109.47544 * 240.00233 * 2 1 3 5 5 C 1.53002 * 109.47611 * 176.85605 * 4 2 1 6 6 H 1.09004 * 109.46976 * 54.55913 * 5 4 2 7 7 C 1.52995 * 109.46865 * 294.55933 * 5 4 2 8 8 N 1.46496 * 109.47212 * 174.55954 * 5 4 2 9 9 C 1.36936 * 120.00016 * 205.76593 * 8 5 4 10 10 H 1.08003 * 119.99772 * 4.93179 * 9 8 5 11 11 C 1.38813 * 120.00256 * 184.92757 * 9 8 5 12 12 N 1.31621 * 119.99991 * 183.97924 * 11 9 8 13 13 Si 1.86801 * 119.99847 * 3.98048 * 11 9 8 14 14 H 1.48489 * 109.47298 * 92.55285 * 13 11 9 15 15 H 1.48503 * 109.46797 * 212.55503 * 13 11 9 16 16 H 1.48500 * 109.47172 * 332.54973 * 13 11 9 17 17 N 1.46499 * 109.47158 * 119.99620 * 2 1 3 18 18 C 1.34776 * 120.00560 * 275.22306 * 17 2 1 19 19 O 1.21616 * 119.99754 * 4.57829 * 18 17 2 20 20 C 1.47322 * 120.00254 * 184.57958 * 18 17 2 21 21 C 1.35401 * 118.73780 * 174.76651 * 20 18 17 22 22 C 1.46490 * 119.22830 * 180.28044 * 21 20 18 23 23 C 1.39403 * 122.09154 * 179.97438 * 22 21 20 24 24 C 1.37911 * 119.49201 * 179.97438 * 23 22 21 25 25 C 1.38767 * 120.71143 * 0.04841 * 24 23 22 26 26 C 1.37997 * 120.73557 * 359.97438 * 25 24 23 27 27 C 1.39163 * 119.53833 * 359.97438 * 26 25 24 28 28 C 1.47045 * 122.06675 * 180.02562 * 27 26 25 29 29 O 1.21626 * 120.34239 * 359.95648 * 28 27 26 30 30 O 1.34399 * 119.31256 * 179.97438 * 28 27 26 31 31 H 1.08998 * 109.46744 * 60.00086 * 1 2 3 32 32 H 1.08996 * 109.46837 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47012 * 299.99897 * 1 2 3 34 34 H 1.09002 * 109.46906 * 296.85875 * 4 2 1 35 35 H 1.09002 * 109.47337 * 56.85092 * 4 2 1 36 36 H 1.09004 * 109.47307 * 299.99777 * 7 5 4 37 37 H 1.08999 * 109.47381 * 59.99876 * 7 5 4 38 38 H 1.09000 * 109.47331 * 179.97438 * 7 5 4 39 39 H 0.97002 * 120.00227 * 25.76426 * 8 5 4 40 40 H 0.97002 * 119.99692 * 180.02562 * 12 11 9 41 41 H 0.97007 * 119.99896 * 95.22469 * 17 2 1 42 42 H 1.08000 * 120.38441 * 0.30013 * 21 20 18 43 43 H 1.08000 * 120.25083 * 0.02562 * 23 22 21 44 44 H 1.08000 * 119.64429 * 180.02562 * 24 23 22 45 45 H 1.07992 * 119.63403 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.23210 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5681 -0.6530 -1.2894 6 1 3.9739 -1.0459 -0.3571 7 6 4.0092 0.8014 -1.4648 8 7 4.0632 -1.4524 -2.4127 9 6 5.3247 -1.9834 -2.3718 10 1 5.9251 -1.8807 -1.4799 11 6 5.8319 -2.6536 -3.4765 12 7 7.0127 -3.2314 -3.4108 13 14 4.8387 -2.7353 -5.0565 14 1 5.2242 -1.6077 -5.9424 15 1 5.1107 -4.0221 -5.7461 16 1 3.3916 -2.6414 -4.7369 17 7 2.0184 -0.6905 1.1962 18 6 2.1429 -0.0193 2.3583 19 8 1.7720 1.1363 2.4357 20 6 2.7282 -0.6854 3.5347 21 6 2.9403 0.0424 4.6566 22 6 3.5275 -0.6077 5.8306 23 6 3.7719 0.0845 7.0158 24 6 4.3265 -0.5811 8.0888 25 6 4.6436 -1.9291 7.9996 26 6 4.4103 -2.6330 6.8358 27 6 3.8504 -1.9819 5.7407 28 6 3.5778 -2.6777 4.4743 29 8 3.8411 -3.8590 4.3532 30 8 3.0351 -1.9948 3.4519 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.7235 -1.7638 -1.2215 35 1 1.6315 -0.2409 -2.1383 36 1 3.6033 1.1943 -2.3971 37 1 3.6408 1.3962 -0.6290 38 1 5.0977 0.8501 -1.4930 39 1 3.4974 -1.6056 -3.1856 40 1 7.3672 -3.6994 -4.1829 41 1 2.2522 -1.6310 1.1519 42 1 2.6791 1.0899 4.6856 43 1 3.5280 1.1337 7.0932 44 1 4.5165 -0.0473 9.0082 45 1 5.0776 -2.4330 8.8504 46 1 4.6598 -3.6821 6.7755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134460120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:23 Heat of formation + Delta-G solvation = -78.183108 kcal Electronic energy + Delta-G solvation = -29599.246932 eV Core-core repulsion = 25453.914173 eV Total energy + Delta-G solvation = -4145.332759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.94598 -41.06673 -39.73901 -39.16273 -38.49730 -36.39889 -34.39161 -34.11322 -32.66101 -32.40166 -31.11998 -30.56665 -27.65550 -26.40603 -25.84292 -25.48377 -23.53806 -23.06164 -22.15847 -21.28830 -20.24504 -20.02865 -19.52536 -18.89814 -18.06416 -17.61050 -17.28827 -16.75219 -16.57978 -16.22139 -15.88351 -15.74492 -15.60402 -15.33990 -15.16267 -14.75305 -14.70405 -14.41224 -14.22070 -14.03939 -13.97038 -13.89850 -13.48844 -13.35649 -13.04087 -12.96212 -12.86008 -12.75124 -12.33821 -12.27402 -12.08651 -11.90503 -11.85897 -11.64772 -11.50692 -11.28192 -11.17326 -11.00094 -10.27164 -10.24288 -9.35143 -9.32545 -8.02265 -5.35850 -0.90440 -0.42054 0.62600 0.98266 1.21658 1.36597 1.42388 1.49197 1.85059 1.97409 2.48791 2.69494 2.71749 3.23535 3.28930 3.42971 3.50882 3.75653 3.79357 3.95618 4.09100 4.15920 4.17815 4.19632 4.37082 4.42358 4.52061 4.55356 4.61688 4.63933 4.77344 4.89228 4.89491 4.93933 5.02641 5.06380 5.09260 5.24154 5.30514 5.31588 5.35933 5.36939 5.55480 5.72357 5.77609 5.82837 6.07768 6.21957 6.34202 6.85932 7.09218 7.85015 8.05744 9.19722 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.002799 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.908635 B = 9999.738838 C =11444.253116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.035 0.965 7 C -0.159 4.159 8 N -0.751 5.751 9 C -0.228 4.228 10 H 0.047 0.953 11 C -0.069 4.069 12 N -0.987 5.987 13 Si 0.962 3.038 14 H -0.282 1.282 15 H -0.298 1.298 16 H -0.244 1.244 17 N -0.702 5.702 18 C 0.580 3.420 19 O -0.536 6.536 20 C 0.019 3.981 21 C -0.096 4.096 22 C -0.034 4.034 23 C -0.098 4.098 24 C -0.069 4.069 25 C -0.113 4.113 26 C -0.062 4.062 27 C -0.192 4.192 28 C 0.518 3.482 29 O -0.488 6.488 30 O -0.283 6.283 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.410 0.590 42 H 0.190 0.810 43 H 0.173 0.827 44 H 0.176 0.824 45 H 0.168 0.832 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 10.309 25.121 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.061 3.939 6 H 0.053 0.947 7 C -0.218 4.218 8 N -0.395 5.395 9 C -0.359 4.359 10 H 0.065 0.935 11 C -0.260 4.260 12 N -0.638 5.638 13 Si 0.790 3.210 14 H -0.208 1.208 15 H -0.225 1.225 16 H -0.169 1.169 17 N -0.352 5.352 18 C 0.365 3.635 19 O -0.416 6.416 20 C -0.028 4.028 21 C -0.116 4.116 22 C -0.035 4.035 23 C -0.116 4.116 24 C -0.087 4.087 25 C -0.130 4.130 26 C -0.080 4.080 27 C -0.193 4.193 28 C 0.366 3.634 29 O -0.377 6.377 30 O -0.196 6.196 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.246 0.754 42 H 0.207 0.793 43 H 0.190 0.810 44 H 0.194 0.806 45 H 0.185 0.815 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.012 10.414 24.957 30.457 hybrid contribution 0.450 -1.221 -1.347 1.873 sum -13.562 9.193 23.610 28.738 Atomic orbital electron populations 1.22113 0.93090 1.02894 1.03207 1.21176 0.95279 0.97071 0.82271 0.89030 1.22130 0.94323 1.01842 0.98093 1.20400 0.93183 0.90447 0.89855 0.94689 1.22332 1.00120 0.97873 1.01477 1.42810 1.14053 1.62120 1.20512 1.18970 0.91558 1.26777 0.98568 0.93494 1.25592 0.97911 1.00587 1.01913 1.69916 1.20565 1.41897 1.31428 0.85298 0.79659 0.76567 0.79523 1.20804 1.22546 1.16873 1.46176 1.64755 1.14901 1.09335 1.17382 0.78442 0.85509 0.82144 1.90837 1.50739 1.16382 1.83644 1.21422 1.03770 0.80345 0.97255 1.22683 0.97206 1.02225 0.89518 1.19174 0.97577 0.91450 0.95272 1.21655 0.97716 1.01840 0.90345 1.21966 0.93029 0.94119 0.99585 1.21765 0.98692 0.95097 0.97484 1.21327 0.94163 1.00986 0.91519 1.20263 1.09005 0.95395 0.94679 1.20895 0.74333 0.85764 0.82394 1.90920 1.49854 1.14825 1.82059 1.83252 1.68578 1.23111 1.44628 0.89518 0.91810 0.92550 0.90784 0.88285 0.92212 0.91718 0.95584 0.79783 0.93436 0.75368 0.79262 0.81007 0.80612 0.81487 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.48 71.98 0.68 -2.24 16 2 C 0.15 3.42 2.39 44.99 0.11 3.53 16 3 H 0.09 2.26 5.95 -2.39 -0.01 2.25 16 4 C -0.13 -3.34 4.42 30.59 0.14 -3.21 16 5 C 0.17 6.23 2.91 44.99 0.13 6.36 16 6 H 0.03 1.43 7.44 -2.39 -0.02 1.41 16 7 C -0.16 -5.45 9.27 71.98 0.67 -4.78 16 8 N -0.75 -34.73 4.90 -322.94 -1.58 -36.31 16 9 C -0.23 -13.25 10.41 84.03 0.87 -12.37 16 10 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 11 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 12 N -0.99 -65.03 13.97 21.65 0.30 -64.73 16 13 Si 0.96 46.03 27.94 68.60 1.92 47.95 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 16 H -0.24 -10.19 6.24 99.48 0.62 -9.57 16 17 N -0.70 -17.98 4.36 -445.91 -1.95 -19.93 16 18 C 0.58 15.23 7.71 86.63 0.67 15.90 16 19 O -0.54 -15.19 15.83 -4.08 -0.06 -15.25 16 20 C 0.02 0.46 6.86 24.01 0.16 0.63 16 21 C -0.10 -1.85 9.52 23.77 0.23 -1.62 16 22 C -0.03 -0.60 5.89 -20.06 -0.12 -0.72 16 23 C -0.10 -0.94 9.88 22.47 0.22 -0.72 16 24 C -0.07 -0.45 10.01 22.32 0.22 -0.22 16 25 C -0.11 -1.06 10.02 22.34 0.22 -0.83 16 26 C -0.06 -1.07 9.66 22.43 0.22 -0.85 16 27 C -0.19 -4.29 5.90 -19.95 -0.12 -4.41 16 28 C 0.52 15.54 8.19 70.13 0.57 16.11 16 29 O -0.49 -17.63 17.39 19.43 0.34 -17.29 16 30 O -0.28 -8.32 8.99 15.83 0.14 -8.18 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.90 6.51 -2.39 -0.02 1.89 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.37 16.02 5.57 -92.71 -0.52 15.51 16 40 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 41 H 0.41 10.88 7.90 -92.70 -0.73 10.15 16 42 H 0.19 2.82 7.48 -2.91 -0.02 2.80 16 43 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 46 H 0.14 2.43 7.80 -2.91 -0.02 2.41 16 Total: -1.00 -80.71 387.99 4.15 -76.56 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.31 Total: 30.33 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.35 Total: 6.85 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.22 Total: -120.97 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: 0.42 Total: -40.72 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.92 Total: 47.95 kcal Total: -80.71 4.15 -76.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134460120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.624 kcal (2) G-P(sol) polarization free energy of solvation -80.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds