Wall clock time and date at job start Wed Apr 1 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 5 5 C 1.52998 * 109.47384 * 185.00170 * 4 2 1 6 6 H 1.09004 * 109.46526 * 304.99490 * 5 4 2 7 7 C 1.52999 * 109.47036 * 184.99951 * 5 4 2 8 8 N 1.46496 * 109.47164 * 64.99625 * 5 4 2 9 9 C 1.34779 * 119.99550 * 205.00192 * 8 5 4 10 10 O 1.21606 * 120.00526 * 359.97438 * 9 8 5 11 11 C 1.47335 * 119.99568 * 180.02562 * 9 8 5 12 12 C 1.35400 * 118.73343 * 179.73394 * 11 9 8 13 13 C 1.46494 * 119.22445 * 179.78743 * 12 11 9 14 14 C 1.39395 * 122.08902 * 180.25646 * 13 12 11 15 15 C 1.37922 * 119.49156 * 180.21393 * 14 13 12 16 16 C 1.38765 * 120.70571 * 359.97438 * 15 14 13 17 17 C 1.37997 * 120.73787 * 0.02562 * 16 15 14 18 18 C 1.39148 * 119.53960 * 0.02562 * 17 16 15 19 19 C 1.47046 * 122.06802 * 180.02562 * 18 17 16 20 20 O 1.21624 * 120.34470 * 359.95705 * 19 18 17 21 21 O 1.34407 * 119.31345 * 179.97438 * 19 18 17 22 22 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 23 23 C 1.36935 * 120.00239 * 84.99640 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47364 * 179.72253 * 27 25 23 29 29 H 1.48508 * 109.46883 * 299.72375 * 27 25 23 30 30 H 1.48497 * 109.46870 * 59.72186 * 27 25 23 31 31 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 33 33 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 34 34 H 1.08997 * 109.46795 * 304.99831 * 4 2 1 35 35 H 1.08999 * 109.47341 * 64.99651 * 4 2 1 36 36 H 1.08996 * 109.47126 * 299.99873 * 7 5 4 37 37 H 1.09004 * 109.47346 * 59.99769 * 7 5 4 38 38 H 1.09003 * 109.47191 * 179.97438 * 7 5 4 39 39 H 0.96994 * 120.00193 * 25.00319 * 8 5 4 40 40 H 1.07993 * 120.38454 * 0.02562 * 12 11 9 41 41 H 1.08000 * 120.25503 * 0.18602 * 14 13 12 42 42 H 1.08004 * 119.64381 * 179.97438 * 15 14 13 43 43 H 1.08000 * 119.63310 * 179.97438 * 16 15 14 44 44 H 1.08001 * 120.22813 * 180.02562 * 17 16 15 45 45 H 0.97004 * 119.99747 * 265.00379 * 22 2 1 46 46 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9953 -0.9923 0.3867 7 6 4.0851 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0865 10 8 5.9380 0.4318 0.5725 11 6 5.5467 2.6240 1.2668 12 6 6.7738 3.0212 0.8547 13 6 7.1665 4.4223 1.0245 14 6 8.4123 4.8967 0.6171 15 6 8.7279 6.2259 0.8069 16 6 7.8192 7.0926 1.3973 17 6 6.5805 6.6436 1.8077 18 6 6.2411 5.3063 1.6271 19 6 4.9372 4.7687 2.0430 20 8 4.1115 5.4939 2.5641 21 8 4.6673 3.4675 1.8415 22 7 2.0183 -0.6906 -1.1962 23 6 2.1490 -0.0075 -2.3758 24 1 1.8925 1.0405 -2.4242 25 6 2.6112 -0.6619 -3.5093 26 7 2.9290 -1.9378 -3.4489 27 14 2.7902 0.2701 -5.1183 28 1 3.3049 -0.6469 -6.1669 29 1 1.4669 0.8022 -5.5320 30 1 3.7411 1.3958 -4.9350 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6054 -0.2617 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.6546 -1.0593 3.4193 37 1 3.8001 -2.4819 2.3594 38 1 5.1715 -1.3617 2.5381 39 1 3.3285 1.4129 1.9027 40 1 7.4536 2.3142 0.4028 41 1 9.1251 4.2286 0.1569 42 1 9.6926 6.5960 0.4926 43 1 8.0845 8.1300 1.5379 44 1 5.8794 7.3255 2.2659 45 1 2.2489 -1.6318 -1.1526 46 1 2.8364 -2.4217 -2.6134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134460121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:27 Heat of formation + Delta-G solvation = -60.239438 kcal Electronic energy + Delta-G solvation = -30023.797534 eV Core-core repulsion = 25879.242871 eV Total energy + Delta-G solvation = -4144.554663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98278 -39.83419 -38.99193 -38.04202 -37.03075 -34.78180 -33.52576 -32.40559 -31.76308 -31.15429 -29.89554 -28.30334 -26.42904 -25.45599 -24.98384 -23.42395 -22.60333 -22.13101 -20.76462 -19.92038 -19.35467 -18.93210 -17.96821 -17.35173 -17.00921 -16.64973 -16.09133 -15.75224 -15.05260 -14.96973 -14.89455 -14.62832 -14.26802 -14.16711 -13.81584 -13.55673 -13.41222 -13.22390 -13.20070 -13.12561 -12.83014 -12.33736 -12.19167 -12.12074 -11.72432 -11.71557 -11.67462 -11.09421 -10.86321 -10.73951 -10.51683 -10.49354 -10.46489 -10.11109 -9.99408 -9.92541 -9.60356 -9.12410 -8.96967 -8.86482 -8.50083 -6.97676 -6.03590 -3.02957 -0.04533 0.34603 1.44890 1.96875 2.13104 2.97497 3.08764 3.47125 3.54522 3.58129 3.58311 3.75374 4.16254 4.22177 4.41780 4.69949 4.71974 4.73870 4.76708 4.99778 5.16693 5.21588 5.28304 5.38378 5.38490 5.48248 5.57103 5.65609 5.78532 5.80481 5.83351 5.88111 5.90521 5.92083 6.03938 6.21006 6.23252 6.29133 6.35165 6.47058 6.51137 6.62490 6.82381 6.84764 7.01680 7.07757 7.54140 7.86419 8.13593 8.81880 9.28794 10.14901 10.29621 11.44903 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.003337 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.760162 B = 8389.148616 C = 9500.438308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.133 4.133 5 C 0.142 3.858 6 H 0.106 0.894 7 C -0.162 4.162 8 N -0.696 5.696 9 C 0.575 3.425 10 O -0.506 6.506 11 C 0.062 3.938 12 C -0.131 4.131 13 C -0.008 4.008 14 C -0.108 4.108 15 C -0.079 4.079 16 C -0.129 4.129 17 C -0.044 4.044 18 C -0.175 4.175 19 C 0.527 3.473 20 O -0.450 6.450 21 O -0.269 6.269 22 N -0.732 5.732 23 C -0.326 4.326 24 H 0.061 0.939 25 C -0.043 4.043 26 N -0.944 5.944 27 Si 1.076 2.924 28 H -0.285 1.285 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.404 0.596 40 H 0.173 0.827 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.366 0.634 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 14.065 14.831 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.038 3.962 6 H 0.124 0.876 7 C -0.220 4.220 8 N -0.346 5.346 9 C 0.359 3.641 10 O -0.382 6.382 11 C 0.014 3.986 12 C -0.152 4.152 13 C -0.008 4.008 14 C -0.126 4.126 15 C -0.097 4.097 16 C -0.147 4.147 17 C -0.062 4.062 18 C -0.177 4.177 19 C 0.373 3.627 20 O -0.336 6.336 21 O -0.180 6.180 22 N -0.375 5.375 23 C -0.457 4.457 24 H 0.079 0.921 25 C -0.241 4.241 26 N -0.589 5.589 27 Si 0.907 3.093 28 H -0.210 1.210 29 H -0.224 1.224 30 H -0.224 1.224 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.239 0.761 40 H 0.190 0.810 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.199 0.801 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.526 13.837 13.142 21.793 hybrid contribution -0.710 0.375 1.702 1.882 sum 9.815 14.211 14.844 22.774 Atomic orbital electron populations 1.22429 0.99312 1.00726 1.00011 1.20176 0.91715 0.95570 0.86005 0.93443 1.22205 0.93405 1.02350 0.99227 1.21153 0.95529 0.79379 1.00091 0.87595 1.22195 1.01633 1.00239 0.97956 1.45919 1.15689 1.12311 1.60660 1.17266 0.83241 0.84312 0.79323 1.90907 1.51346 1.52871 1.43082 1.21601 0.89549 0.89435 0.97973 1.22380 0.96010 0.95160 1.01606 1.19044 0.94158 0.92049 0.95598 1.21242 0.95255 0.96249 0.99869 1.21446 0.99590 0.93094 0.95600 1.21312 0.93445 1.00567 0.99333 1.21109 0.96540 0.93238 0.95345 1.20239 0.94761 0.96078 1.06575 1.20345 0.86891 0.78591 0.76874 1.90935 1.49972 1.52229 1.40441 1.83332 1.45743 1.21708 1.67251 1.42404 1.79168 1.09654 1.06257 1.19965 1.41728 0.94876 0.89109 0.92114 1.25658 0.99487 0.97512 1.01446 1.70877 1.51271 1.08397 1.28403 0.83301 0.75788 0.74351 0.75858 1.21031 1.22395 1.22429 0.93637 0.94498 0.92802 0.91622 0.90431 0.92783 0.91408 0.92316 0.76070 0.81007 0.84022 0.84692 0.84676 0.83990 0.80109 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.49 37.16 0.35 -2.62 16 2 C 0.18 3.39 2.84 -67.93 -0.19 3.20 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 4 C -0.13 -2.02 4.29 -26.73 -0.11 -2.13 16 5 C 0.14 2.24 2.52 -67.93 -0.17 2.07 16 6 H 0.11 2.14 7.05 -51.93 -0.37 1.77 16 7 C -0.16 -2.11 9.48 37.16 0.35 -1.75 16 8 N -0.70 -10.51 4.44 -54.91 -0.24 -10.75 16 9 C 0.57 9.41 7.73 -12.56 -0.10 9.31 16 10 O -0.51 -9.76 15.82 5.27 0.08 -9.68 16 11 C 0.06 0.87 6.86 -36.90 -0.25 0.62 16 12 C -0.13 -1.61 9.52 -37.27 -0.35 -1.96 16 13 C -0.01 -0.09 5.89 -104.92 -0.62 -0.70 16 14 C -0.11 -0.88 9.88 -39.27 -0.39 -1.26 16 15 C -0.08 -0.52 10.01 -39.50 -0.40 -0.91 16 16 C -0.13 -0.88 10.02 -39.47 -0.40 -1.27 16 17 C -0.04 -0.41 9.66 -39.33 -0.38 -0.79 16 18 C -0.17 -2.02 5.90 -104.76 -0.62 -2.64 16 19 C 0.53 7.31 8.19 34.30 0.28 7.59 16 20 O -0.45 -7.05 17.39 -19.36 -0.34 -7.38 16 21 O -0.27 -3.79 8.98 -20.37 -0.18 -3.98 16 22 N -0.73 -17.89 4.49 -53.43 -0.24 -18.13 16 23 C -0.33 -9.18 9.93 -15.06 -0.15 -9.33 16 24 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 25 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 26 N -0.94 -29.43 13.70 55.49 0.76 -28.67 16 27 Si 1.08 26.63 29.92 -169.99 -5.09 21.54 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 5.39 7.93 -40.82 -0.32 5.06 16 40 H 0.17 1.98 7.47 -52.49 -0.39 1.58 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.14 1.17 7.80 -52.49 -0.41 0.76 16 45 H 0.37 9.26 6.63 -40.82 -0.27 8.99 16 46 H 0.25 7.78 6.77 -40.82 -0.28 7.51 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -34.82 392.11 -8.86 -43.68 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.29 Total: 11.42 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.24 Total: -3.96 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.28 Total: -57.56 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.44 Total: -21.04 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -5.09 Total: 21.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.82 -8.86 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134460121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.555 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds