Wall clock time and date at job start Wed Apr 1 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47110 * 2 1 4 4 C 1.52991 * 109.47263 * 240.00152 * 2 1 3 5 5 C 1.53005 * 109.47158 * 174.99661 * 4 2 1 6 6 H 1.08999 * 109.47337 * 304.99607 * 5 4 2 7 7 C 1.53006 * 109.47178 * 184.99677 * 5 4 2 8 8 N 1.46499 * 109.47003 * 65.00182 * 5 4 2 9 9 C 1.34778 * 120.00013 * 205.00028 * 8 5 4 10 10 O 1.21636 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.47192 * 119.99830 * 179.97438 * 9 8 5 12 12 C 1.35886 * 120.50025 * 5.92114 * 11 9 8 13 13 O 1.33709 * 122.51187 * 179.71698 * 12 11 9 14 14 C 1.34515 * 122.85629 * 0.54668 * 13 12 11 15 15 O 1.21620 * 120.26144 * 179.74767 * 14 13 12 16 16 C 1.46869 * 119.47057 * 359.46964 * 14 13 12 17 17 C 1.39363 * 122.09906 * 180.22914 * 16 14 13 18 18 C 1.37827 * 119.49360 * 179.97438 * 17 16 14 19 19 C 1.38804 * 120.69220 * 0.04838 * 18 17 16 20 20 C 1.37922 * 120.69648 * 359.95413 * 19 18 17 21 21 C 1.39064 * 119.51672 * 0.02562 * 20 19 18 22 22 N 1.46492 * 109.47300 * 119.99738 * 2 1 3 23 23 C 1.36939 * 120.00113 * 275.00522 * 22 2 1 24 24 H 1.07997 * 120.00024 * 359.97438 * 23 22 2 25 25 C 1.38821 * 120.00040 * 180.02562 * 23 22 2 26 26 N 1.31614 * 119.99934 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99931 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46846 * 89.99645 * 27 25 23 29 29 H 1.48498 * 109.46797 * 209.99628 * 27 25 23 30 30 H 1.48499 * 109.46901 * 329.99852 * 27 25 23 31 31 H 1.08999 * 109.47196 * 60.00394 * 1 2 3 32 32 H 1.09003 * 109.47110 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47392 * 300.00275 * 1 2 3 34 34 H 1.09000 * 109.47261 * 54.99636 * 4 2 1 35 35 H 1.08993 * 109.47265 * 294.99789 * 4 2 1 36 36 H 1.09004 * 109.46668 * 59.99835 * 7 5 4 37 37 H 1.08997 * 109.47210 * 180.02562 * 7 5 4 38 38 H 1.08999 * 109.46930 * 300.00180 * 7 5 4 39 39 H 0.97001 * 120.00034 * 24.99319 * 8 5 4 40 40 H 1.08005 * 118.74055 * 359.97438 * 12 11 9 41 41 H 1.08001 * 120.25442 * 0.02562 * 17 16 14 42 42 H 1.08001 * 119.65685 * 180.02562 * 18 17 16 43 43 H 1.07998 * 119.65612 * 179.97438 * 19 18 17 44 44 H 1.08000 * 120.24452 * 179.97438 * 20 19 18 45 45 H 0.96994 * 120.00160 * 95.00215 * 22 2 1 46 46 H 0.96996 * 120.00305 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4360 -1.2678 7 6 4.0646 -1.2249 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3748 -0.9909 0.2734 10 8 5.9881 -0.0829 -0.2549 11 6 5.9662 -1.7148 1.4103 12 6 5.3457 -2.8058 1.9312 13 8 5.8494 -3.4965 2.9594 14 6 7.0020 -3.1634 3.5676 15 8 7.4146 -3.8228 4.5025 16 6 7.7614 -2.0006 3.0897 17 6 8.9637 -1.6095 3.6759 18 6 9.6324 -0.5094 3.1836 19 6 9.1201 0.2107 2.1132 20 6 7.9318 -0.1602 1.5194 21 6 7.2417 -1.2674 2.0007 22 7 2.0183 -0.6905 1.1961 23 6 2.1490 -0.0074 2.3757 24 1 1.8925 1.0406 2.4241 25 6 2.6123 -0.6616 3.5091 26 7 2.9255 -1.9386 3.4500 27 14 2.7913 0.2705 5.1180 28 1 1.5239 0.1793 5.8865 29 1 3.8962 -0.3226 5.9133 30 1 3.0960 1.6957 4.8331 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.6053 -0.2617 -2.1369 35 1 1.7517 -1.7714 -1.2056 36 1 3.6264 -0.6885 -3.4657 37 1 5.1509 -1.1483 -2.6697 38 1 3.7724 -2.2740 -2.6699 39 1 3.6648 -2.0583 0.2387 40 1 4.4121 -3.1297 1.4955 41 1 9.3688 -2.1646 4.5090 42 1 10.5646 -0.2042 3.6357 43 1 9.6578 1.0703 1.7412 44 1 7.5397 0.4056 0.6873 45 1 2.2491 -1.6316 1.1526 46 1 3.2488 -2.3958 4.2419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135157102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:30 Heat of formation + Delta-G solvation = -50.379889 kcal Electronic energy + Delta-G solvation = -31672.829774 eV Core-core repulsion = 27528.702653 eV Total energy + Delta-G solvation = -4144.127121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43069 -39.46466 -38.41942 -37.58573 -36.82470 -34.32986 -33.19352 -32.32436 -31.06789 -30.88662 -29.19930 -28.51545 -26.43006 -24.97705 -24.21869 -23.79359 -22.64884 -21.19776 -20.51357 -20.02028 -18.57129 -18.33767 -17.51768 -17.29842 -16.34868 -16.07603 -15.92227 -15.20748 -14.96876 -14.70963 -14.40763 -14.25238 -13.92984 -13.78626 -13.66926 -13.16228 -12.94030 -12.86292 -12.81011 -12.76030 -12.39062 -12.20593 -11.97741 -11.83575 -11.75602 -11.68539 -11.26607 -11.08706 -10.91753 -10.83461 -10.46903 -10.33869 -10.04928 -10.00921 -9.80651 -9.77379 -9.21793 -9.09475 -8.93952 -8.54446 -7.82435 -7.07911 -5.97429 -3.18808 0.79143 0.98621 1.94994 2.66165 2.82160 3.36290 3.43542 3.46184 3.48168 3.70338 4.19255 4.19811 4.49017 4.71286 4.91798 5.00794 5.04043 5.26063 5.32403 5.35077 5.39372 5.43560 5.48375 5.58463 5.71794 5.76772 5.83525 5.87728 5.92550 5.96961 6.04610 6.14778 6.25810 6.28053 6.31603 6.37501 6.45772 6.49432 6.58598 6.64060 6.75872 6.94075 6.98756 7.10545 7.43535 7.57260 7.65843 8.00406 8.23767 8.73873 9.35949 9.87112 10.22521 11.25626 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.005298 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.385793 B = 5283.432629 C = 6680.630624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.086 0.914 7 C -0.163 4.163 8 N -0.696 5.696 9 C 0.595 3.405 10 O -0.556 6.556 11 C -0.254 4.254 12 C 0.200 3.800 13 O -0.256 6.256 14 C 0.525 3.475 15 O -0.462 6.462 16 C -0.194 4.194 17 C -0.048 4.048 18 C -0.147 4.147 19 C -0.083 4.083 20 C -0.122 4.122 21 C 0.043 3.957 22 N -0.715 5.715 23 C -0.216 4.216 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.898 3.102 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.400 0.600 40 H 0.197 0.803 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.169 0.831 45 H 0.375 0.625 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -0.200 -9.548 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.104 0.896 7 C -0.221 4.221 8 N -0.349 5.349 9 C 0.384 3.616 10 O -0.437 6.437 11 C -0.259 4.259 12 C 0.132 3.868 13 O -0.164 6.164 14 C 0.372 3.628 15 O -0.348 6.348 16 C -0.196 4.196 17 C -0.066 4.066 18 C -0.165 4.165 19 C -0.102 4.102 20 C -0.139 4.139 21 C 0.042 3.958 22 N -0.358 5.358 23 C -0.346 4.346 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.730 3.270 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.238 0.762 40 H 0.213 0.787 41 H 0.153 0.847 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.186 0.814 45 H 0.210 0.790 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.380 0.086 -9.248 11.235 hybrid contribution -0.296 0.072 1.418 1.451 sum 6.084 0.158 -7.829 9.917 Atomic orbital electron populations 1.22410 0.99122 1.00794 1.00031 1.20314 0.91767 0.95831 0.86240 0.93215 1.22223 0.93921 1.01686 0.99477 1.20834 0.92467 0.97381 0.84637 0.89591 1.22215 1.01903 1.00854 0.97164 1.45904 1.17437 1.37606 1.33912 1.17169 0.80928 0.82259 0.81225 1.90538 1.61826 1.31467 1.59882 1.20281 0.99238 1.01602 1.04770 1.23654 0.92994 0.88801 0.81342 1.83276 1.38061 1.53292 1.41814 1.20477 0.77800 0.83487 0.81056 1.90869 1.64942 1.53823 1.25176 1.20047 0.99220 0.99207 1.01080 1.20934 0.92189 0.95618 0.97857 1.21121 1.00825 0.96375 0.98214 1.21456 0.95450 0.98531 0.94719 1.22019 0.94282 0.96174 1.01463 1.18659 0.91650 0.93683 0.91763 1.42476 1.77732 1.10035 1.05537 1.19257 1.34449 0.93847 0.87088 0.91295 1.24502 1.02466 0.96016 0.97639 1.69428 1.51059 1.08395 1.29159 0.86302 0.77376 0.79035 0.84305 1.21785 1.21774 1.20933 0.94493 0.93559 0.92847 0.90602 0.91677 0.92031 0.92244 0.92773 0.76219 0.78709 0.84730 0.85529 0.85521 0.81429 0.79009 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.49 37.16 0.35 -2.21 16 2 C 0.17 2.82 2.89 -67.94 -0.20 2.62 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.76 4.43 -26.73 -0.12 -1.88 16 5 C 0.15 2.13 2.57 -67.93 -0.17 1.96 16 6 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 7 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 8 N -0.70 -11.03 3.75 -54.95 -0.21 -11.24 16 9 C 0.60 10.80 7.70 -12.62 -0.10 10.70 16 10 O -0.56 -10.88 13.33 5.25 0.07 -10.81 16 11 C -0.25 -4.64 5.99 -103.33 -0.62 -5.26 16 12 C 0.20 3.53 9.49 29.89 0.28 3.81 16 13 O -0.26 -4.89 9.75 -17.93 -0.17 -5.06 16 14 C 0.52 10.22 8.18 34.22 0.28 10.50 16 15 O -0.46 -9.63 17.39 -19.36 -0.34 -9.97 16 16 C -0.19 -3.48 5.89 -104.87 -0.62 -4.10 16 17 C -0.05 -0.73 9.66 -39.31 -0.38 -1.11 16 18 C -0.15 -1.93 10.01 -39.52 -0.40 -2.33 16 19 C -0.08 -1.14 10.02 -39.49 -0.40 -1.54 16 20 C -0.12 -2.04 9.34 -39.39 -0.37 -2.41 16 21 C 0.04 0.79 5.90 -104.70 -0.62 0.18 16 22 N -0.72 -14.59 3.84 -53.43 -0.21 -14.80 16 23 C -0.22 -5.24 9.93 -15.06 -0.15 -5.39 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -23.28 11.69 55.49 0.65 -22.63 16 27 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 30 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 6.22 4.53 -40.82 -0.18 6.03 16 40 H 0.20 3.13 6.27 -52.48 -0.33 2.80 16 41 H 0.13 1.87 7.80 -52.49 -0.41 1.46 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.17 2.95 5.16 -52.49 -0.27 2.68 16 45 H 0.38 7.67 5.70 -40.82 -0.23 7.44 16 46 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -28.41 379.61 -8.48 -36.89 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.01 Total: 13.55 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.96 Total: 1.62 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.24 Total: -48.66 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.44 Total: -25.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.41 -8.48 -36.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135157102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.488 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds