Wall clock time and date at job start Wed Apr 1 2020 02:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.52991 * 109.47296 * 120.00347 * 2 1 3 5 5 C 1.53005 * 109.47158 * 184.99813 * 4 2 1 6 6 H 1.08999 * 109.47337 * 304.99607 * 5 4 2 7 7 C 1.53006 * 109.47178 * 184.99677 * 5 4 2 8 8 N 1.46499 * 109.47003 * 65.00182 * 5 4 2 9 9 C 1.34778 * 120.00013 * 205.00028 * 8 5 4 10 10 O 1.21636 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.47192 * 119.99830 * 179.97438 * 9 8 5 12 12 C 1.35889 * 120.49943 * 354.25130 * 11 9 8 13 13 O 1.33707 * 122.50769 * 179.71587 * 12 11 9 14 14 C 1.34512 * 122.86079 * 0.54798 * 13 12 11 15 15 O 1.21622 * 120.26390 * 179.74044 * 14 13 12 16 16 C 1.46868 * 119.46925 * 359.47347 * 14 13 12 17 17 C 1.39364 * 122.09823 * 180.22941 * 16 14 13 18 18 C 1.37824 * 119.49234 * 179.97438 * 17 16 14 19 19 C 1.38806 * 120.69627 * 0.04198 * 18 17 16 20 20 C 1.37928 * 120.68955 * 359.95533 * 19 18 17 21 21 C 1.39060 * 119.51768 * 0.02562 * 20 19 18 22 22 N 1.46505 * 109.46966 * 240.00423 * 2 1 3 23 23 C 1.36928 * 120.00231 * 84.99848 * 22 2 1 24 24 H 1.08001 * 120.00413 * 0.02562 * 23 22 2 25 25 C 1.38817 * 120.00219 * 179.97438 * 23 22 2 26 26 N 1.31625 * 120.00205 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99837 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46872 * 90.00175 * 27 25 23 29 29 H 1.48493 * 109.47176 * 210.00216 * 27 25 23 30 30 H 1.48496 * 109.47158 * 330.00155 * 27 25 23 31 31 H 1.09000 * 109.47353 * 60.00097 * 1 2 3 32 32 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46923 * 300.00004 * 1 2 3 34 34 H 1.09000 * 109.47261 * 64.99788 * 4 2 1 35 35 H 1.08993 * 109.47265 * 304.99941 * 4 2 1 36 36 H 1.08997 * 109.47210 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.46930 * 300.00180 * 7 5 4 38 38 H 1.09004 * 109.46668 * 59.99835 * 7 5 4 39 39 H 0.97001 * 120.00034 * 24.99319 * 8 5 4 40 40 H 1.08003 * 118.74382 * 359.97438 * 12 11 9 41 41 H 1.08001 * 120.25531 * 0.02562 * 17 16 14 42 42 H 1.08005 * 119.65602 * 179.97438 * 18 17 16 43 43 H 1.07998 * 119.65668 * 179.97438 * 19 18 17 44 44 H 1.07995 * 120.24176 * 179.97438 * 20 19 18 45 45 H 0.97009 * 119.99762 * 264.99683 * 22 2 1 46 46 H 0.97000 * 119.99707 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 1 3.9955 -0.9923 0.3867 7 6 4.0853 -1.4384 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0866 10 8 5.9382 0.4317 0.5723 11 6 5.5459 2.6229 1.2658 12 6 4.6468 3.5294 1.7311 13 8 4.9544 4.8177 1.9142 14 6 6.1713 5.3230 1.6441 15 8 6.3983 6.5042 1.8241 16 6 7.2255 4.4358 1.1355 17 6 8.5064 4.9000 0.8421 18 6 9.4550 4.0198 0.3678 19 6 9.1467 2.6796 0.1794 20 6 7.8849 2.2007 0.4640 21 6 6.9134 3.0723 0.9439 22 7 2.0183 -0.6905 -1.1963 23 6 2.1490 -0.0074 -2.3758 24 1 1.8926 1.0406 -2.4242 25 6 2.6122 -0.6616 -3.5091 26 7 2.7384 -0.0048 -4.6428 27 14 3.0579 -2.4738 -3.4250 28 1 1.8612 -3.2931 -3.7443 29 1 4.1335 -2.7651 -4.4064 30 1 3.5331 -2.8037 -2.0573 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.7516 -1.7715 1.2054 35 1 1.6055 -0.2619 2.1368 36 1 5.1715 -1.3611 2.5385 37 1 3.6547 -1.0594 3.4192 38 1 3.8001 -2.4820 2.3593 39 1 3.3285 1.4128 1.9027 40 1 3.6468 3.1957 1.9656 41 1 8.7541 5.9413 0.9861 42 1 10.4484 4.3768 0.1392 43 1 9.9028 2.0046 -0.1935 44 1 7.6528 1.1567 0.3143 45 1 2.2490 -1.6318 -1.1527 46 1 3.0617 -0.4621 -5.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135157104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:41 Heat of formation + Delta-G solvation = -51.068081 kcal Electronic energy + Delta-G solvation = -30356.747116 eV Core-core repulsion = 26212.590152 eV Total energy + Delta-G solvation = -4144.156963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03893 -39.90881 -38.87101 -38.10398 -37.05243 -34.75224 -33.69610 -32.23672 -31.49316 -31.19599 -29.59865 -29.20901 -26.51306 -25.57278 -24.70954 -23.42167 -22.99806 -21.53188 -20.91148 -19.95558 -19.09368 -18.93142 -18.16131 -17.59189 -16.99395 -16.53610 -16.21854 -15.69310 -15.18990 -15.00845 -14.75725 -14.60190 -14.19112 -14.18699 -13.76224 -13.51727 -13.35223 -13.34795 -13.19872 -12.84897 -12.70145 -12.45614 -12.19946 -12.10447 -12.04124 -11.80570 -11.63635 -11.32026 -10.97400 -10.72580 -10.60540 -10.55688 -10.33810 -10.30712 -10.01908 -9.67190 -9.58303 -9.32697 -9.02271 -8.93550 -8.41564 -7.27280 -5.75886 -3.11434 0.24055 0.44666 1.44838 2.02186 2.27922 3.02562 3.13001 3.38633 3.40322 3.46897 3.61918 3.69386 4.03571 4.47822 4.54149 4.60326 4.72215 4.87509 4.94730 5.01891 5.11702 5.16787 5.20422 5.35554 5.43335 5.45358 5.53592 5.67152 5.71870 5.78593 5.82446 5.91543 5.96373 6.10546 6.14053 6.19401 6.24432 6.25421 6.35753 6.43089 6.55755 6.67538 6.73867 6.81420 6.92827 7.06441 7.47790 7.98387 8.23504 8.42604 9.20844 9.93639 10.12241 11.42556 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.003516 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.078492 B = 7961.210827 C = 8644.619106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.176 3.824 3 H 0.053 0.947 4 C -0.136 4.136 5 C 0.144 3.856 6 H 0.104 0.896 7 C -0.162 4.162 8 N -0.712 5.712 9 C 0.580 3.420 10 O -0.520 6.520 11 C -0.215 4.215 12 C 0.132 3.868 13 O -0.266 6.266 14 C 0.525 3.475 15 O -0.449 6.449 16 C -0.185 4.185 17 C -0.049 4.049 18 C -0.132 4.132 19 C -0.079 4.079 20 C -0.110 4.110 21 C 0.020 3.980 22 N -0.745 5.745 23 C -0.240 4.240 24 H 0.088 0.912 25 C 0.007 3.993 26 N -0.934 5.934 27 Si 0.883 3.117 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.276 1.276 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.392 0.608 40 H 0.198 0.802 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.172 0.828 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 4.310 18.150 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.175 4.175 5 C 0.040 3.960 6 H 0.122 0.878 7 C -0.221 4.221 8 N -0.363 5.363 9 C 0.366 3.634 10 O -0.398 6.398 11 C -0.220 4.220 12 C 0.067 3.933 13 O -0.176 6.176 14 C 0.372 3.628 15 O -0.334 6.334 16 C -0.186 4.186 17 C -0.067 4.067 18 C -0.150 4.150 19 C -0.097 4.097 20 C -0.128 4.128 21 C 0.019 3.981 22 N -0.388 5.388 23 C -0.370 4.370 24 H 0.105 0.895 25 C -0.189 4.189 26 N -0.582 5.582 27 Si 0.713 3.287 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.202 1.202 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.227 0.773 40 H 0.214 0.786 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.189 0.811 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.845 4.632 17.750 19.951 hybrid contribution -0.039 -1.077 -0.111 1.084 sum 7.806 3.555 17.638 19.613 Atomic orbital electron populations 1.22429 0.98902 1.00922 1.00395 1.20198 0.91863 0.95726 0.85538 0.92902 1.22243 0.93561 1.02433 0.99228 1.21082 0.95265 0.79678 0.99981 0.87800 1.22198 1.01740 1.00122 0.97998 1.45898 1.15902 1.12010 1.62523 1.17304 0.82181 0.85827 0.78043 1.90656 1.50478 1.55569 1.43059 1.20721 0.94964 0.95369 1.10907 1.23691 0.98779 0.78913 0.91942 1.83261 1.36197 1.26140 1.71987 1.20493 0.79325 0.87499 0.75496 1.90925 1.77696 1.15331 1.49491 1.20003 0.95921 0.93315 1.09395 1.20995 0.90544 1.00420 0.94738 1.21269 0.99781 0.93533 1.00441 1.21574 0.96782 0.95544 0.95832 1.22102 0.91640 1.02770 0.96252 1.18607 0.91949 0.91770 0.95744 1.42772 1.79591 1.09355 1.07129 1.18987 1.37032 0.95422 0.85577 0.89469 1.24644 1.01298 0.97379 0.95586 1.69699 1.52638 1.35532 1.00283 0.86578 0.78001 0.86968 0.77139 1.21277 1.21841 1.20242 0.92365 0.93579 0.94325 0.90479 0.91408 0.92274 0.92801 0.91658 0.77323 0.78612 0.84250 0.84933 0.84878 0.81118 0.80730 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.49 37.16 0.35 -2.23 16 2 C 0.18 2.92 2.84 -67.93 -0.19 2.73 16 3 H 0.05 0.90 7.56 -51.93 -0.39 0.51 16 4 C -0.14 -1.69 4.29 -26.73 -0.11 -1.81 16 5 C 0.14 1.92 2.52 -67.93 -0.17 1.75 16 6 H 0.10 1.86 7.05 -51.93 -0.37 1.50 16 7 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 8 N -0.71 -8.50 4.39 -54.95 -0.24 -8.74 16 9 C 0.58 8.35 7.70 -12.62 -0.10 8.25 16 10 O -0.52 -9.29 13.32 5.25 0.07 -9.22 16 11 C -0.21 -2.72 5.99 -103.33 -0.62 -3.34 16 12 C 0.13 1.32 10.83 29.89 0.32 1.64 16 13 O -0.27 -3.15 9.75 -17.91 -0.17 -3.32 16 14 C 0.53 7.09 8.18 34.22 0.28 7.37 16 15 O -0.45 -6.92 17.39 -19.36 -0.34 -7.26 16 16 C -0.18 -2.38 5.89 -104.87 -0.62 -3.00 16 17 C -0.05 -0.54 9.66 -39.31 -0.38 -0.92 16 18 C -0.13 -1.27 10.01 -39.52 -0.40 -1.67 16 19 C -0.08 -0.85 10.02 -39.48 -0.40 -1.24 16 20 C -0.11 -1.47 9.34 -39.39 -0.37 -1.84 16 21 C 0.02 0.27 5.90 -104.70 -0.62 -0.34 16 22 N -0.75 -16.36 4.30 -53.43 -0.23 -16.59 16 23 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 24 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 25 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 27 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 30 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.39 3.29 6.62 -40.82 -0.27 3.02 16 40 H 0.20 1.13 6.29 -52.48 -0.33 0.80 16 41 H 0.14 1.34 7.80 -52.49 -0.41 0.93 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.17 2.55 5.16 -52.49 -0.27 2.27 16 45 H 0.36 7.90 5.66 -40.82 -0.23 7.67 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 383.41 15.07 5.78 5.78 Total: -1.00 -35.28 383.41 -8.08 -43.35 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.09 Total: 9.84 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.91 Total: -2.68 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.30 Total: -53.86 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.44 Total: -19.80 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.28 -8.08 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135157104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.715 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds