Wall clock time and date at job start Wed Apr 1 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.52991 * 109.47296 * 120.00347 * 2 1 3 5 5 C 1.53005 * 109.47158 * 184.99813 * 4 2 1 6 6 H 1.08999 * 109.47337 * 304.99607 * 5 4 2 7 7 C 1.53006 * 109.47178 * 184.99677 * 5 4 2 8 8 N 1.46499 * 109.47003 * 65.00182 * 5 4 2 9 9 C 1.34778 * 120.00013 * 205.00028 * 8 5 4 10 10 O 1.21636 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.47192 * 119.99830 * 179.97438 * 9 8 5 12 12 C 1.35889 * 120.49943 * 354.25130 * 11 9 8 13 13 O 1.33707 * 122.50769 * 179.71587 * 12 11 9 14 14 C 1.34512 * 122.86079 * 0.54798 * 13 12 11 15 15 O 1.21622 * 120.26390 * 179.74044 * 14 13 12 16 16 C 1.46868 * 119.46925 * 359.47347 * 14 13 12 17 17 C 1.39364 * 122.09823 * 180.22941 * 16 14 13 18 18 C 1.37824 * 119.49234 * 179.97438 * 17 16 14 19 19 C 1.38806 * 120.69627 * 0.04198 * 18 17 16 20 20 C 1.37928 * 120.68955 * 359.95533 * 19 18 17 21 21 C 1.39060 * 119.51768 * 0.02562 * 20 19 18 22 22 N 1.46505 * 109.46966 * 240.00423 * 2 1 3 23 23 C 1.36928 * 120.00231 * 84.99848 * 22 2 1 24 24 H 1.08001 * 120.00413 * 0.02562 * 23 22 2 25 25 C 1.38817 * 120.00219 * 179.97438 * 23 22 2 26 26 N 1.31625 * 120.00205 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99837 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46872 * 90.00175 * 27 25 23 29 29 H 1.48493 * 109.47176 * 210.00216 * 27 25 23 30 30 H 1.48496 * 109.47158 * 330.00155 * 27 25 23 31 31 H 1.09000 * 109.47353 * 60.00097 * 1 2 3 32 32 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.46923 * 300.00004 * 1 2 3 34 34 H 1.09000 * 109.47261 * 64.99788 * 4 2 1 35 35 H 1.08993 * 109.47265 * 304.99941 * 4 2 1 36 36 H 1.08997 * 109.47210 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.46930 * 300.00180 * 7 5 4 38 38 H 1.09004 * 109.46668 * 59.99835 * 7 5 4 39 39 H 0.97001 * 120.00034 * 24.99319 * 8 5 4 40 40 H 1.08003 * 118.74382 * 359.97438 * 12 11 9 41 41 H 1.08001 * 120.25531 * 0.02562 * 17 16 14 42 42 H 1.08005 * 119.65602 * 179.97438 * 18 17 16 43 43 H 1.07998 * 119.65668 * 179.97438 * 19 18 17 44 44 H 1.07995 * 120.24176 * 179.97438 * 20 19 18 45 45 H 0.97009 * 119.99762 * 264.99683 * 22 2 1 46 46 H 0.97000 * 119.99707 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3135 6 1 3.9955 -0.9923 0.3867 7 6 4.0853 -1.4384 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0866 10 8 5.9382 0.4317 0.5723 11 6 5.5459 2.6229 1.2658 12 6 4.6468 3.5294 1.7311 13 8 4.9544 4.8177 1.9142 14 6 6.1713 5.3230 1.6441 15 8 6.3983 6.5042 1.8241 16 6 7.2255 4.4358 1.1355 17 6 8.5064 4.9000 0.8421 18 6 9.4550 4.0198 0.3678 19 6 9.1467 2.6796 0.1794 20 6 7.8849 2.2007 0.4640 21 6 6.9134 3.0723 0.9439 22 7 2.0183 -0.6905 -1.1963 23 6 2.1490 -0.0074 -2.3758 24 1 1.8926 1.0406 -2.4242 25 6 2.6122 -0.6616 -3.5091 26 7 2.7384 -0.0048 -4.6428 27 14 3.0579 -2.4738 -3.4250 28 1 1.8612 -3.2931 -3.7443 29 1 4.1335 -2.7651 -4.4064 30 1 3.5331 -2.8037 -2.0573 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.7516 -1.7715 1.2054 35 1 1.6055 -0.2619 2.1368 36 1 5.1715 -1.3611 2.5385 37 1 3.6547 -1.0594 3.4192 38 1 3.8001 -2.4820 2.3593 39 1 3.3285 1.4128 1.9027 40 1 3.6468 3.1957 1.9656 41 1 8.7541 5.9413 0.9861 42 1 10.4484 4.3768 0.1392 43 1 9.9028 2.0046 -0.1935 44 1 7.6528 1.1567 0.3143 45 1 2.2490 -1.6318 -1.1527 46 1 3.0617 -0.4621 -5.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135157104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:40 Heat of formation + Delta-G solvation = -73.894531 kcal Electronic energy + Delta-G solvation = -30357.736945 eV Core-core repulsion = 26212.590152 eV Total energy + Delta-G solvation = -4145.146792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.01569 -40.99739 -39.78460 -39.17804 -38.35049 -36.17227 -34.72063 -34.01243 -32.48256 -32.30416 -31.06450 -30.37371 -27.57841 -26.55333 -25.63412 -25.32068 -24.01782 -22.56277 -22.04535 -21.33879 -20.05625 -19.97633 -19.59072 -19.02166 -17.99897 -17.56216 -17.32461 -16.70357 -16.52237 -16.21508 -16.06575 -15.65490 -15.56168 -15.25102 -15.15677 -14.63389 -14.50323 -14.34892 -14.33074 -14.20123 -13.97360 -13.86072 -13.39084 -13.21459 -13.01052 -12.96989 -12.78428 -12.61807 -12.53707 -12.35029 -11.96643 -11.84021 -11.66188 -11.57933 -11.41662 -11.24661 -10.94652 -10.78279 -10.25552 -10.08679 -9.32668 -9.24233 -7.99247 -5.29107 -0.64938 -0.51287 0.51446 1.07274 1.29230 1.35548 1.39897 1.45827 2.01418 2.11749 2.50148 2.67586 2.75443 3.21451 3.34406 3.54059 3.63613 3.68988 3.83051 3.93992 4.09909 4.15290 4.18883 4.26750 4.39428 4.45956 4.56243 4.62019 4.69468 4.81139 4.86043 4.90822 4.95573 5.03456 5.09383 5.12486 5.22993 5.31152 5.35311 5.37589 5.43424 5.60089 5.64649 5.76694 5.82651 5.83002 6.05036 6.25647 6.51639 7.14136 7.22398 7.93411 8.08093 9.23016 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.003516 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.078492 B = 7961.210827 C = 8644.619106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.122 4.122 5 C 0.143 3.857 6 H 0.054 0.946 7 C -0.153 4.153 8 N -0.699 5.699 9 C 0.575 3.425 10 O -0.564 6.564 11 C -0.243 4.243 12 C 0.159 3.841 13 O -0.264 6.264 14 C 0.525 3.475 15 O -0.475 6.475 16 C -0.202 4.202 17 C -0.051 4.051 18 C -0.124 4.124 19 C -0.074 4.074 20 C -0.139 4.139 21 C 0.005 3.995 22 N -0.749 5.749 23 C -0.211 4.211 24 H 0.054 0.946 25 C -0.068 4.068 26 N -0.989 5.989 27 Si 0.947 3.053 28 H -0.278 1.278 29 H -0.306 1.306 30 H -0.252 1.252 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.243 0.757 41 H 0.154 0.846 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.362 0.638 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 3.848 21.237 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.160 4.160 5 C 0.039 3.961 6 H 0.072 0.928 7 C -0.211 4.211 8 N -0.352 5.352 9 C 0.363 3.637 10 O -0.445 6.445 11 C -0.248 4.248 12 C 0.094 3.906 13 O -0.173 6.173 14 C 0.373 3.627 15 O -0.362 6.362 16 C -0.204 4.204 17 C -0.069 4.069 18 C -0.142 4.142 19 C -0.092 4.092 20 C -0.156 4.156 21 C 0.004 3.996 22 N -0.393 5.393 23 C -0.342 4.342 24 H 0.072 0.928 25 C -0.259 4.259 26 N -0.641 5.641 27 Si 0.776 3.224 28 H -0.204 1.204 29 H -0.233 1.233 30 H -0.177 1.177 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.258 0.742 41 H 0.171 0.829 42 H 0.187 0.813 43 H 0.175 0.825 44 H 0.167 0.833 45 H 0.195 0.805 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.153 4.170 20.936 22.514 hybrid contribution 0.121 -0.832 -1.003 1.309 sum 7.274 3.338 19.933 21.479 Atomic orbital electron populations 1.22303 0.97380 1.01331 1.00836 1.20554 0.92768 0.95617 0.85314 0.93463 1.22170 0.92477 1.02914 0.98481 1.20977 0.95845 0.80382 0.98900 0.92819 1.22103 1.00595 1.00316 0.98077 1.45768 1.15454 1.12135 1.61839 1.17579 0.82405 0.86208 0.77477 1.90645 1.51908 1.56810 1.45142 1.20643 0.95575 0.95120 1.13414 1.24366 0.99605 0.77591 0.89020 1.83281 1.35536 1.26907 1.71582 1.20605 0.79762 0.87292 0.74997 1.90903 1.78335 1.16201 1.50745 1.20091 0.96711 0.92936 1.10676 1.21322 0.90116 1.01420 0.94032 1.21643 1.01013 0.92624 0.98917 1.21895 0.96171 0.96626 0.94522 1.22050 0.93227 1.02029 0.98336 1.18799 0.92596 0.92166 0.96069 1.42844 1.79746 1.09470 1.07193 1.18959 1.33771 0.94147 0.87339 0.92764 1.25413 1.02990 1.02022 0.95460 1.69885 1.55510 1.37477 1.01184 0.85511 0.77420 0.81660 0.77826 1.20406 1.23322 1.17706 0.95760 0.93182 0.90057 0.89537 0.86646 0.94168 0.89800 0.90835 0.75050 0.74158 0.82854 0.81284 0.82550 0.83293 0.80526 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.49 71.98 0.68 -3.76 16 2 C 0.16 5.08 2.84 44.99 0.13 5.20 16 3 H 0.05 1.51 7.56 -2.39 -0.02 1.50 16 4 C -0.12 -2.54 4.29 30.59 0.13 -2.41 16 5 C 0.14 3.53 2.52 45.00 0.11 3.65 16 6 H 0.05 1.91 7.05 -2.39 -0.02 1.90 16 7 C -0.15 -2.97 9.48 71.98 0.68 -2.28 16 8 N -0.70 -15.42 4.39 -446.00 -1.96 -17.38 16 9 C 0.58 16.68 7.70 86.59 0.67 17.35 16 10 O -0.56 -21.21 13.32 -4.14 -0.06 -21.26 16 11 C -0.24 -6.13 5.99 -19.03 -0.11 -6.24 16 12 C 0.16 2.89 10.83 67.27 0.73 3.62 16 13 O -0.26 -5.90 9.75 24.62 0.24 -5.66 16 14 C 0.53 13.99 8.18 70.08 0.57 14.56 16 15 O -0.47 -14.50 17.39 19.44 0.34 -14.16 16 16 C -0.20 -5.21 5.89 -20.03 -0.12 -5.33 16 17 C -0.05 -1.08 9.66 22.44 0.22 -0.86 16 18 C -0.12 -2.19 10.01 22.31 0.22 -1.96 16 19 C -0.07 -1.55 10.02 22.33 0.22 -1.33 16 20 C -0.14 -3.87 9.34 22.39 0.21 -3.66 16 21 C 0.00 0.13 5.90 -19.91 -0.12 0.01 16 22 N -0.75 -32.33 4.30 -322.95 -1.39 -33.72 16 23 C -0.21 -11.72 10.41 84.04 0.87 -10.84 16 24 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 25 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 26 N -0.99 -64.69 13.97 21.65 0.30 -64.39 16 27 Si 0.95 46.57 27.74 68.60 1.90 48.47 16 28 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 29 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 30 H -0.25 -11.22 6.52 99.48 0.65 -10.58 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.41 5.42 6.62 -92.71 -0.61 4.81 16 40 H 0.24 1.87 6.29 -2.91 -0.02 1.86 16 41 H 0.15 2.75 7.80 -2.91 -0.02 2.73 16 42 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.15 4.84 5.16 -2.91 -0.02 4.82 16 45 H 0.36 15.36 5.66 -92.70 -0.52 14.84 16 46 H 0.25 15.96 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -83.59 383.41 4.79 -78.80 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.16 Total: 27.17 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.57 Total: 2.13 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -3.04 Total: -115.49 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: 0.52 Total: -41.08 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Total: -83.59 4.79 -78.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135157104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -83.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds