Wall clock time and date at job start Wed Apr 1 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.53008 * 109.46897 * 240.00178 * 2 1 3 5 5 C 1.52999 * 109.46593 * 174.99607 * 4 2 1 6 6 H 1.08999 * 109.47014 * 55.00651 * 5 4 2 7 7 C 1.52999 * 109.46645 * 175.00100 * 5 4 2 8 8 N 1.46499 * 109.47493 * 295.00052 * 5 4 2 9 9 C 1.34777 * 119.99665 * 155.28120 * 8 5 4 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 5 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 5 12 12 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 13 13 C 1.38250 * 119.98262 * 99.99683 * 12 11 9 14 14 C 1.38355 * 120.02880 * 179.97438 * 13 12 11 15 15 F 1.35097 * 120.01108 * 179.97438 * 14 13 12 16 16 C 1.38693 * 119.97782 * 359.97438 * 14 13 12 17 17 F 1.35099 * 120.01712 * 180.02562 * 16 14 13 18 18 C 1.38349 * 119.95598 * 359.97438 * 16 14 13 19 19 C 1.38423 * 119.98026 * 279.72239 * 12 11 9 20 20 F 1.35100 * 119.98552 * 359.97438 * 19 12 11 21 21 N 1.46495 * 109.47241 * 119.99955 * 2 1 3 22 22 C 1.36934 * 120.00515 * 275.00080 * 21 2 1 23 23 H 1.08004 * 119.99592 * 0.02562 * 22 21 2 24 24 C 1.38810 * 120.00375 * 180.02562 * 22 21 2 25 25 N 1.31627 * 119.99918 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00131 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47262 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47360 * 120.00137 * 26 24 22 29 29 H 1.48499 * 109.47282 * 240.00011 * 26 24 22 30 30 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47141 * 299.99792 * 1 2 3 32 32 H 1.08994 * 109.47219 * 59.99448 * 1 2 3 33 33 H 1.08998 * 109.46879 * 54.99914 * 4 2 1 34 34 H 1.08993 * 109.47165 * 294.99693 * 4 2 1 35 35 H 1.08999 * 109.47488 * 180.02562 * 7 5 4 36 36 H 1.09005 * 109.47368 * 300.00374 * 7 5 4 37 37 H 1.09006 * 109.47500 * 60.00110 * 7 5 4 38 38 H 0.97001 * 119.99790 * 334.99833 * 8 5 4 39 39 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 40 40 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 41 41 H 1.08002 * 119.98401 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.00859 * 180.02562 * 18 16 14 43 43 H 0.97005 * 119.99292 * 95.00054 * 21 2 1 44 44 H 0.96993 * 119.99801 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3869 7 6 4.0851 -1.4381 -2.4926 8 7 3.9479 0.7895 -1.4925 9 6 5.1633 1.2124 -1.0918 10 8 5.9378 0.4328 -0.5788 11 6 5.5596 2.6539 -1.2813 12 6 6.9552 2.8647 -0.7531 13 6 8.0263 2.9010 -1.6264 14 6 9.3079 3.0950 -1.1426 15 9 10.3544 3.1299 -1.9963 16 6 9.5179 3.2536 0.2191 17 9 10.7689 3.4436 0.6924 18 6 8.4453 3.2182 1.0923 19 6 7.1632 3.0275 0.6057 20 9 6.1151 2.9979 1.4576 21 7 2.0183 -0.6906 1.1961 22 6 2.1492 -0.0076 2.3757 23 1 1.8919 1.0403 2.4243 24 6 2.6124 -0.6618 3.5090 25 7 2.9255 -1.9389 3.4498 26 14 2.7915 0.2702 5.1178 27 1 2.3776 1.6825 4.9205 28 1 1.9313 -0.3584 6.1524 29 1 4.2086 0.2273 5.5596 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6053 -0.2617 -2.1370 34 1 1.7517 -1.7715 -1.2057 35 1 5.1714 -1.3616 -2.5383 36 1 3.8000 -2.4818 -2.3597 37 1 3.6544 -1.0592 -3.4195 38 1 3.3283 1.4129 -1.9029 39 1 5.5311 2.9021 -2.3423 40 1 4.8655 3.2960 -0.7392 41 1 7.8624 2.7787 -2.6869 42 1 8.6079 3.3420 2.1528 43 1 2.2490 -1.6318 1.1525 44 1 3.2495 -2.3960 4.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135549713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:49 Heat of formation + Delta-G solvation = -144.902205 kcal Electronic energy + Delta-G solvation = -30605.160853 eV Core-core repulsion = 25915.078197 eV Total energy + Delta-G solvation = -4690.082656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.71752 -49.03485 -48.78949 -39.95180 -38.72745 -36.81801 -34.45608 -33.04393 -32.11465 -30.87421 -30.44344 -28.59115 -27.54555 -26.31562 -23.74452 -23.59459 -22.76182 -21.18419 -20.27298 -19.71236 -18.47757 -18.11821 -17.54436 -17.34194 -16.95266 -16.51581 -16.10664 -15.64610 -15.44216 -15.19145 -15.16013 -14.78203 -14.63692 -14.52659 -14.26314 -13.95258 -13.72126 -13.56779 -13.28280 -12.96808 -12.78206 -12.47586 -12.22908 -12.08644 -11.85978 -11.80910 -11.73114 -11.67448 -11.55483 -11.02747 -10.81821 -10.60288 -10.42729 -10.19102 -9.87145 -9.71888 -9.59694 -9.32386 -8.85831 -8.73459 -8.73088 -6.89537 -5.70481 -2.98347 0.49840 0.59666 2.81705 2.88570 3.39887 3.47145 3.48070 3.52531 3.54929 3.78938 4.08426 4.17183 4.26376 4.64843 4.66630 4.90526 5.00549 5.14933 5.22352 5.28949 5.39169 5.42704 5.45232 5.49602 5.63853 5.68054 5.71850 5.78080 5.88825 5.93371 6.01342 6.13173 6.28981 6.34663 6.41605 6.44398 6.56777 6.71538 6.80543 6.92467 7.07784 7.74897 7.75429 8.47678 8.49751 9.59411 10.16444 10.50348 11.52371 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.003646 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.524140 B = 7678.477364 C = 9537.319406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.046 0.954 4 C -0.131 4.131 5 C 0.144 3.856 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.715 5.715 9 C 0.515 3.485 10 O -0.525 6.525 11 C -0.104 4.104 12 C -0.079 4.079 13 C -0.086 4.086 14 C 0.055 3.945 15 F -0.126 7.126 16 C 0.098 3.902 17 F -0.122 7.122 18 C -0.164 4.164 19 C 0.148 3.852 20 F -0.112 7.112 21 N -0.720 5.720 22 C -0.233 4.233 23 H 0.067 0.933 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.901 3.099 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.394 0.606 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.155 0.845 42 H 0.160 0.840 43 H 0.383 0.617 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.679 11.604 -15.497 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.169 4.169 5 C 0.040 3.960 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.366 5.366 9 C 0.300 3.700 10 O -0.400 6.400 11 C -0.144 4.144 12 C -0.081 4.081 13 C -0.105 4.105 14 C 0.035 3.965 15 F -0.105 7.105 16 C 0.077 3.923 17 F -0.101 7.101 18 C -0.183 4.183 19 C 0.128 3.872 20 F -0.090 7.090 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.228 0.772 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.216 0.784 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.302 11.151 -14.951 20.030 hybrid contribution 0.052 0.433 0.958 1.052 sum 7.354 11.584 -13.994 19.599 Atomic orbital electron populations 1.22463 0.99594 1.00796 0.99740 1.20216 0.91520 0.95520 0.86555 0.93650 1.22167 0.93709 1.02234 0.98818 1.21037 0.95106 0.80023 0.99860 0.87641 1.22181 1.01447 1.00252 0.98002 1.45913 1.16059 1.11797 1.62805 1.20136 0.82303 0.89193 0.78350 1.90766 1.51082 1.56176 1.42005 1.20642 0.93393 0.96426 1.03972 1.19224 0.95866 1.01595 0.91400 1.20720 0.88988 0.99481 1.01344 1.17482 0.85233 1.07944 0.85870 1.91536 1.55568 1.94191 1.69201 1.17210 0.80439 1.04328 0.90310 1.91553 1.37401 1.92474 1.88645 1.20957 0.90068 1.05434 1.01858 1.17113 0.83895 0.99224 0.87008 1.91640 1.54933 1.93027 1.69440 1.42404 1.77956 1.10557 1.05292 1.19184 1.36278 0.93666 0.87303 0.91470 1.24676 1.02188 0.95904 0.97913 1.69656 1.51012 1.08627 1.28662 0.86210 0.77346 0.78826 0.84405 1.20648 1.22006 1.21911 0.93554 0.92921 0.94743 0.92073 0.90659 0.92583 0.91760 0.93167 0.77207 0.87158 0.86931 0.82723 0.82225 0.78370 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.15 2.84 -67.93 -0.19 2.95 16 3 H 0.05 0.84 7.56 -51.93 -0.39 0.45 16 4 C -0.13 -1.90 4.29 -26.73 -0.11 -2.01 16 5 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.11 2.20 7.06 -51.93 -0.37 1.83 16 7 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 8 N -0.71 -9.38 4.45 -53.81 -0.24 -9.62 16 9 C 0.52 7.59 7.78 -10.99 -0.09 7.51 16 10 O -0.52 -10.36 15.62 5.55 0.09 -10.27 16 11 C -0.10 -1.06 5.56 -29.04 -0.16 -1.22 16 12 C -0.08 -0.92 4.43 -104.55 -0.46 -1.38 16 13 C -0.09 -0.87 9.64 -39.53 -0.38 -1.25 16 14 C 0.06 0.63 7.31 -39.37 -0.29 0.34 16 15 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 16 C 0.10 1.17 7.31 -39.37 -0.29 0.88 16 17 F -0.12 -1.52 17.18 2.25 0.04 -1.48 16 18 C -0.16 -1.97 10.00 -39.46 -0.39 -2.37 16 19 C 0.15 1.98 7.13 -39.43 -0.28 1.70 16 20 F -0.11 -1.80 16.65 2.25 0.04 -1.76 16 21 N -0.72 -17.43 4.49 -53.43 -0.24 -17.67 16 22 C -0.23 -6.42 9.93 -15.06 -0.15 -6.57 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 26 Si 0.90 22.96 29.55 -169.99 -5.02 17.93 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.39 3.83 8.60 -40.82 -0.35 3.48 16 39 H 0.11 0.66 8.00 -51.93 -0.42 0.25 16 40 H 0.11 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.16 1.10 8.04 -52.49 -0.42 0.68 16 42 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 43 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -34.14 387.03 -7.13 -41.27 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.03 Total: 8.93 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.36 Total: -3.99 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.25 Total: -55.03 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.11 Total: -4.68 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.14 -7.13 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135549713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.632 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds