Wall clock time and date at job start Wed Apr 1 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.53008 * 109.46897 * 240.00178 * 2 1 3 5 5 C 1.52999 * 109.46593 * 174.99607 * 4 2 1 6 6 H 1.08999 * 109.47014 * 55.00651 * 5 4 2 7 7 C 1.52999 * 109.46645 * 175.00100 * 5 4 2 8 8 N 1.46499 * 109.47493 * 295.00052 * 5 4 2 9 9 C 1.34777 * 119.99665 * 155.28120 * 8 5 4 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 5 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 5 12 12 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 13 13 C 1.38250 * 119.98262 * 99.99683 * 12 11 9 14 14 C 1.38355 * 120.02880 * 179.97438 * 13 12 11 15 15 F 1.35097 * 120.01108 * 179.97438 * 14 13 12 16 16 C 1.38693 * 119.97782 * 359.97438 * 14 13 12 17 17 F 1.35099 * 120.01712 * 180.02562 * 16 14 13 18 18 C 1.38349 * 119.95598 * 359.97438 * 16 14 13 19 19 C 1.38423 * 119.98026 * 279.72239 * 12 11 9 20 20 F 1.35100 * 119.98552 * 359.97438 * 19 12 11 21 21 N 1.46495 * 109.47241 * 119.99955 * 2 1 3 22 22 C 1.36934 * 120.00515 * 275.00080 * 21 2 1 23 23 H 1.08004 * 119.99592 * 0.02562 * 22 21 2 24 24 C 1.38810 * 120.00375 * 180.02562 * 22 21 2 25 25 N 1.31627 * 119.99918 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00131 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47262 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47360 * 120.00137 * 26 24 22 29 29 H 1.48499 * 109.47282 * 240.00011 * 26 24 22 30 30 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47141 * 299.99792 * 1 2 3 32 32 H 1.08994 * 109.47219 * 59.99448 * 1 2 3 33 33 H 1.08998 * 109.46879 * 54.99914 * 4 2 1 34 34 H 1.08993 * 109.47165 * 294.99693 * 4 2 1 35 35 H 1.08999 * 109.47488 * 180.02562 * 7 5 4 36 36 H 1.09005 * 109.47368 * 300.00374 * 7 5 4 37 37 H 1.09006 * 109.47500 * 60.00110 * 7 5 4 38 38 H 0.97001 * 119.99790 * 334.99833 * 8 5 4 39 39 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 40 40 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 41 41 H 1.08002 * 119.98401 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.00859 * 180.02562 * 18 16 14 43 43 H 0.97005 * 119.99292 * 95.00054 * 21 2 1 44 44 H 0.96993 * 119.99801 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3869 7 6 4.0851 -1.4381 -2.4926 8 7 3.9479 0.7895 -1.4925 9 6 5.1633 1.2124 -1.0918 10 8 5.9378 0.4328 -0.5788 11 6 5.5596 2.6539 -1.2813 12 6 6.9552 2.8647 -0.7531 13 6 8.0263 2.9010 -1.6264 14 6 9.3079 3.0950 -1.1426 15 9 10.3544 3.1299 -1.9963 16 6 9.5179 3.2536 0.2191 17 9 10.7689 3.4436 0.6924 18 6 8.4453 3.2182 1.0923 19 6 7.1632 3.0275 0.6057 20 9 6.1151 2.9979 1.4576 21 7 2.0183 -0.6906 1.1961 22 6 2.1492 -0.0076 2.3757 23 1 1.8919 1.0403 2.4243 24 6 2.6124 -0.6618 3.5090 25 7 2.9255 -1.9389 3.4498 26 14 2.7915 0.2702 5.1178 27 1 2.3776 1.6825 4.9205 28 1 1.9313 -0.3584 6.1524 29 1 4.2086 0.2273 5.5596 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6053 -0.2617 -2.1370 34 1 1.7517 -1.7715 -1.2057 35 1 5.1714 -1.3616 -2.5383 36 1 3.8000 -2.4818 -2.3597 37 1 3.6544 -1.0592 -3.4195 38 1 3.3283 1.4129 -1.9029 39 1 5.5311 2.9021 -2.3423 40 1 4.8655 3.2960 -0.7392 41 1 7.8624 2.7787 -2.6869 42 1 8.6079 3.3420 2.1528 43 1 2.2490 -1.6318 1.1525 44 1 3.2495 -2.3960 4.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135549713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:48 Heat of formation + Delta-G solvation = -166.747053 kcal Electronic energy + Delta-G solvation = -30606.108117 eV Core-core repulsion = 25915.078197 eV Total energy + Delta-G solvation = -4691.029920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.65513 -50.14737 -49.72556 -41.03967 -39.72560 -38.22648 -36.00372 -34.10811 -33.83906 -32.03307 -31.43601 -30.39799 -28.46341 -27.54520 -25.65055 -24.63315 -23.78191 -22.33881 -21.47425 -21.12682 -19.45856 -19.27388 -19.05916 -18.46369 -18.14876 -17.50431 -17.24151 -16.81738 -16.59075 -16.47094 -16.17630 -16.12022 -15.69954 -15.67024 -15.49816 -15.38832 -15.15845 -14.70688 -14.49971 -14.28240 -14.06789 -13.57688 -13.52125 -13.32328 -13.18156 -12.94881 -12.82168 -12.79686 -12.73612 -12.62963 -12.51150 -12.19762 -12.14221 -11.78858 -11.53096 -11.37814 -10.92885 -10.87000 -10.24010 -9.90394 -9.69509 -8.92793 -7.91275 -5.15793 -0.43717 -0.29315 1.41502 1.43976 1.51626 1.77428 1.90019 2.46547 2.50713 2.56765 2.86313 3.22612 3.25197 3.39665 3.44181 3.80999 3.85758 3.98523 4.07403 4.19872 4.27866 4.37631 4.42752 4.46230 4.58293 4.60152 4.65818 4.73897 4.79850 4.83543 4.87466 4.93616 4.99135 5.08102 5.13776 5.28588 5.39656 5.47448 5.51414 5.55075 5.66643 5.73845 6.32500 6.72608 7.38313 7.45915 8.19440 8.37868 9.32919 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.003646 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.524140 B = 7678.477364 C = 9537.319406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.047 0.953 4 C -0.117 4.117 5 C 0.147 3.853 6 H 0.042 0.958 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.506 3.494 10 O -0.585 6.585 11 C -0.096 4.096 12 C -0.082 4.082 13 C -0.072 4.072 14 C 0.053 3.947 15 F -0.127 7.127 16 C 0.087 3.913 17 F -0.128 7.128 18 C -0.168 4.168 19 C 0.118 3.882 20 F -0.135 7.135 21 N -0.732 5.732 22 C -0.219 4.219 23 H 0.071 0.929 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.955 3.045 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.303 1.303 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.164 0.836 40 H 0.125 0.875 41 H 0.193 0.807 42 H 0.167 0.833 43 H 0.369 0.631 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 13.535 -18.741 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.060 0.940 7 C -0.208 4.208 8 N -0.355 5.355 9 C 0.293 3.707 10 O -0.465 6.465 11 C -0.135 4.135 12 C -0.083 4.083 13 C -0.090 4.090 14 C 0.033 3.967 15 F -0.106 7.106 16 C 0.067 3.933 17 F -0.106 7.106 18 C -0.187 4.187 19 C 0.099 3.901 20 F -0.114 7.114 21 N -0.372 5.372 22 C -0.352 4.352 23 H 0.089 0.911 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.786 3.214 27 H -0.189 1.189 28 H -0.220 1.220 29 H -0.231 1.231 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.253 0.747 39 H 0.181 0.819 40 H 0.143 0.857 41 H 0.210 0.790 42 H 0.184 0.816 43 H 0.200 0.800 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.987 13.157 -18.255 23.285 hybrid contribution 0.432 -0.131 1.866 1.920 sum 6.419 13.025 -16.389 21.897 Atomic orbital electron populations 1.22317 0.97879 1.00731 1.00752 1.20543 0.92508 0.95433 0.85963 0.93510 1.22071 0.92940 1.02010 0.98554 1.20772 0.95410 0.81526 0.98124 0.94009 1.22066 1.00406 1.00003 0.98318 1.45791 1.16136 1.11348 1.62224 1.20973 0.81943 0.90693 0.77045 1.90751 1.52875 1.58229 1.44644 1.20746 0.92428 0.92954 1.07405 1.19477 0.97283 1.00860 0.90698 1.21067 0.87630 0.97431 1.02899 1.17648 0.85837 1.07693 0.85516 1.91536 1.55765 1.94176 1.69093 1.17320 0.80178 1.04996 0.90834 1.91535 1.37656 1.92609 1.88810 1.21030 0.89903 1.05333 1.02446 1.17495 0.83722 1.01035 0.87883 1.91574 1.55931 1.93514 1.70332 1.42635 1.78136 1.10084 1.06371 1.19535 1.33475 0.93776 0.88398 0.91095 1.25375 1.03750 0.96759 1.01045 1.69803 1.53362 1.10116 1.28877 0.85316 0.76403 0.78584 0.81092 1.18909 1.22023 1.23132 0.94178 0.95284 0.90303 0.87229 0.91068 0.94288 0.91837 0.89623 0.74732 0.81852 0.85707 0.78981 0.81580 0.79978 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.49 71.98 0.68 -4.23 16 2 C 0.16 5.69 2.84 44.99 0.13 5.82 16 3 H 0.05 1.62 7.56 -2.39 -0.02 1.61 16 4 C -0.12 -3.09 4.29 30.60 0.13 -2.96 16 5 C 0.15 4.34 2.52 44.99 0.11 4.45 16 6 H 0.04 1.81 7.06 -2.39 -0.02 1.79 16 7 C -0.15 -3.61 9.48 71.98 0.68 -2.93 16 8 N -0.70 -16.76 4.45 -442.54 -1.97 -18.73 16 9 C 0.51 14.21 7.78 87.66 0.68 14.89 16 10 O -0.59 -23.58 15.62 -3.04 -0.05 -23.63 16 11 C -0.10 -1.65 5.56 29.10 0.16 -1.49 16 12 C -0.08 -1.75 4.43 -19.82 -0.09 -1.84 16 13 C -0.07 -1.26 9.64 22.30 0.22 -1.04 16 14 C 0.05 1.14 7.31 22.41 0.16 1.30 16 15 F -0.13 -2.77 17.18 44.97 0.77 -1.99 16 16 C 0.09 2.08 7.31 22.41 0.16 2.24 16 17 F -0.13 -3.18 17.18 44.97 0.77 -2.41 16 18 C -0.17 -4.14 10.00 22.35 0.22 -3.92 16 19 C 0.12 3.20 7.13 22.37 0.16 3.36 16 20 F -0.14 -4.46 16.65 44.97 0.75 -3.71 16 21 N -0.73 -35.85 4.49 -322.94 -1.45 -37.30 16 22 C -0.22 -12.24 9.93 84.03 0.83 -11.40 16 23 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 25 N -0.97 -61.61 13.06 21.65 0.28 -61.32 16 26 Si 0.96 48.35 29.55 68.60 2.03 50.38 16 27 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 29 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.42 6.28 8.60 -92.71 -0.80 5.48 16 39 H 0.16 1.03 8.00 -2.39 -0.02 1.01 16 40 H 0.12 1.90 7.93 -2.39 -0.02 1.88 16 41 H 0.19 1.84 8.04 -2.91 -0.02 1.81 16 42 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 43 H 0.37 19.93 7.80 -92.70 -0.72 19.21 16 44 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.15 387.03 5.39 -74.76 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.47 Total: 25.83 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.72 Total: -1.86 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -3.14 Total: -117.36 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 9 Polarization: -10.41 SS G_CDS: 2.29 Total: -8.11 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -80.15 5.39 -74.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135549713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.991 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds