Wall clock time and date at job start Wed Apr 1 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47175 * 2 1 4 4 C 1.53003 * 109.47197 * 120.00114 * 2 1 3 5 5 C 1.52999 * 109.46919 * 184.99788 * 4 2 1 6 6 H 1.08996 * 109.47469 * 304.99800 * 5 4 2 7 7 C 1.53003 * 109.46917 * 185.00382 * 5 4 2 8 8 N 1.46497 * 109.47017 * 65.00454 * 5 4 2 9 9 C 1.34780 * 119.99566 * 205.00005 * 8 5 4 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 5 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 5 12 12 C 1.50703 * 109.47064 * 179.97438 * 11 9 8 13 13 C 1.38244 * 119.97424 * 264.72173 * 12 11 9 14 14 C 1.38367 * 120.01975 * 179.76711 * 13 12 11 15 15 F 1.35102 * 120.00587 * 180.25511 * 14 13 12 16 16 C 1.38684 * 119.97940 * 0.53135 * 14 13 12 17 17 F 1.35100 * 120.01851 * 179.70112 * 16 14 13 18 18 C 1.38350 * 119.95706 * 359.72078 * 16 14 13 19 19 C 1.38419 * 119.97718 * 85.00000 * 12 11 9 20 20 F 1.35099 * 119.99383 * 359.97438 * 19 12 11 21 21 N 1.46496 * 109.46874 * 240.00112 * 2 1 3 22 22 C 1.36937 * 120.00064 * 85.00206 * 21 2 1 23 23 H 1.08006 * 120.00035 * 0.02562 * 22 21 2 24 24 C 1.38818 * 120.00448 * 179.97438 * 22 21 2 25 25 N 1.31618 * 119.99403 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00124 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47020 * 60.00598 * 26 24 22 28 28 H 1.48508 * 109.46808 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47306 * 299.99872 * 26 24 22 30 30 H 1.08998 * 109.47018 * 59.99666 * 1 2 3 31 31 H 1.08995 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46817 * 300.00335 * 1 2 3 33 33 H 1.08997 * 109.47041 * 65.00003 * 4 2 1 34 34 H 1.08998 * 109.47029 * 305.00151 * 4 2 1 35 35 H 1.09000 * 109.47614 * 59.99489 * 7 5 4 36 36 H 1.08998 * 109.47302 * 180.02562 * 7 5 4 37 37 H 1.09006 * 109.46570 * 299.99863 * 7 5 4 38 38 H 0.96995 * 120.00423 * 24.99311 * 8 5 4 39 39 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 40 40 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 41 41 H 1.08002 * 119.99122 * 0.02562 * 13 12 11 42 42 H 1.07997 * 120.01076 * 180.02562 * 18 16 14 43 43 H 0.96998 * 120.00075 * 265.00041 * 21 2 1 44 44 H 0.97002 * 119.99800 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 1 3.9954 -0.9923 0.3868 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2134 1.0866 10 8 5.9360 0.4339 0.5738 11 6 5.5556 2.6562 1.2711 12 6 6.9495 2.8679 0.7388 13 6 8.0323 2.8113 1.5963 14 6 9.3129 3.0008 1.1077 15 9 10.3714 2.9402 1.9451 16 6 9.5091 3.2586 -0.2408 17 9 10.7586 3.4497 -0.7176 18 6 8.4243 3.3203 -1.0973 19 6 7.1441 3.1248 -0.6074 20 9 6.0847 3.1850 -1.4435 21 7 2.0183 -0.6906 -1.1962 22 6 2.1491 -0.0074 -2.3757 23 1 1.8927 1.0406 -2.4241 24 6 2.6122 -0.6616 -3.5091 25 7 2.9252 -1.9387 -3.4500 26 14 2.7899 0.2702 -5.1183 27 1 3.7445 1.3932 -4.9372 28 1 3.2990 -0.6482 -6.1685 29 1 1.4672 0.8060 -5.5288 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -1.7715 1.2056 34 1 1.6054 -0.2618 2.1370 35 1 3.8001 -2.4821 2.3594 36 1 5.1715 -1.3612 2.5385 37 1 3.6546 -1.0594 3.4192 38 1 3.3285 1.4128 1.9028 39 1 4.8584 3.2955 0.7295 40 1 5.5300 2.9072 2.3315 41 1 7.8791 2.6149 2.6472 42 1 8.5761 3.5205 -2.1476 43 1 2.2489 -1.6317 -1.1527 44 1 3.2492 -2.3958 -4.2419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135549714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:52 Heat of formation + Delta-G solvation = -166.603367 kcal Electronic energy + Delta-G solvation = -30591.609479 eV Core-core repulsion = 25900.585789 eV Total energy + Delta-G solvation = -4691.023689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.65784 -50.16177 -49.72857 -41.04546 -39.72730 -38.22588 -36.00236 -34.10875 -33.84013 -32.03451 -31.44081 -30.39641 -28.46929 -27.54489 -25.64298 -24.64704 -23.77698 -22.33982 -21.47575 -21.12741 -19.46588 -19.26893 -19.06457 -18.46645 -18.16010 -17.50875 -17.24368 -16.81856 -16.59997 -16.47759 -16.17636 -16.12443 -15.70970 -15.66799 -15.49695 -15.39056 -15.16230 -14.72635 -14.49760 -14.27627 -14.07066 -13.57558 -13.51488 -13.32305 -13.18015 -12.91422 -12.80042 -12.77261 -12.76255 -12.63624 -12.51203 -12.24279 -12.18638 -11.78239 -11.52961 -11.38072 -10.91600 -10.86338 -10.24459 -9.90694 -9.70129 -8.92713 -7.90753 -5.15395 -0.44212 -0.29825 1.42164 1.45691 1.50177 1.76787 1.89449 2.46754 2.50192 2.57184 2.85201 3.21989 3.24478 3.39463 3.44209 3.80943 3.85395 3.98011 4.07168 4.19822 4.27923 4.36999 4.42273 4.46137 4.57782 4.59946 4.65314 4.73900 4.79176 4.83544 4.87529 4.93208 4.99072 5.08079 5.13663 5.28600 5.39618 5.47320 5.50904 5.54659 5.66554 5.73665 6.32604 6.72250 7.38519 7.45441 8.19782 8.38336 9.32978 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.003655 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.431292 B = 7659.659367 C = 9498.868560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.163 3.837 3 H 0.047 0.953 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.042 0.958 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.507 3.493 10 O -0.585 6.585 11 C -0.097 4.097 12 C -0.081 4.081 13 C -0.072 4.072 14 C 0.053 3.947 15 F -0.127 7.127 16 C 0.087 3.913 17 F -0.127 7.127 18 C -0.166 4.166 19 C 0.117 3.883 20 F -0.135 7.135 21 N -0.732 5.732 22 C -0.223 4.223 23 H 0.070 0.930 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.956 3.044 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.275 1.275 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.124 0.876 40 H 0.164 0.836 41 H 0.191 0.809 42 H 0.168 0.832 43 H 0.369 0.631 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 13.405 18.544 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.060 0.940 7 C -0.208 4.208 8 N -0.355 5.355 9 C 0.294 3.706 10 O -0.465 6.465 11 C -0.136 4.136 12 C -0.082 4.082 13 C -0.091 4.091 14 C 0.033 3.967 15 F -0.106 7.106 16 C 0.067 3.933 17 F -0.106 7.106 18 C -0.186 4.186 19 C 0.097 3.903 20 F -0.113 7.113 21 N -0.372 5.372 22 C -0.355 4.355 23 H 0.088 0.912 24 C -0.269 4.269 25 N -0.621 5.621 26 Si 0.787 3.213 27 H -0.212 1.212 28 H -0.225 1.225 29 H -0.201 1.201 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.253 0.747 39 H 0.142 0.858 40 H 0.181 0.819 41 H 0.208 0.792 42 H 0.186 0.814 43 H 0.200 0.800 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.056 13.006 18.051 23.058 hybrid contribution 0.407 -0.072 -1.827 1.873 sum 6.462 12.934 16.224 21.732 Atomic orbital electron populations 1.22319 0.97899 1.00725 1.00732 1.20541 0.92498 0.95421 0.85979 0.93543 1.22072 0.92951 1.02014 0.98546 1.20776 0.95405 0.81512 0.98151 0.93987 1.22064 1.00421 0.99993 0.98299 1.45795 1.16282 1.11332 1.62086 1.20962 0.81956 0.90662 0.77041 1.90750 1.52779 1.58265 1.44677 1.20745 0.92473 0.92979 1.07369 1.19465 0.97180 1.00593 0.91005 1.21049 0.87648 0.97491 1.02863 1.17659 0.85499 1.07357 0.86166 1.91537 1.54825 1.94125 1.70110 1.17314 0.80196 1.04784 0.91032 1.91536 1.37805 1.92643 1.88598 1.21033 0.89712 1.05290 1.02523 1.17475 0.83478 1.01179 0.88137 1.91569 1.55032 1.93493 1.71203 1.42616 1.78188 1.10069 1.06348 1.19463 1.33842 0.93761 0.88463 0.91170 1.25383 1.03660 0.96757 1.01060 1.69790 1.53178 1.10096 1.29026 0.85452 0.77934 0.77417 0.80534 1.21231 1.22525 1.20081 0.95313 0.94175 0.90309 0.91056 0.87238 0.91821 0.94259 0.89638 0.74737 0.85810 0.81864 0.79221 0.81428 0.79972 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.49 71.98 0.68 -4.24 16 2 C 0.16 5.71 2.84 44.99 0.13 5.83 16 3 H 0.05 1.62 7.56 -2.38 -0.02 1.60 16 4 C -0.12 -3.09 4.29 30.59 0.13 -2.96 16 5 C 0.15 4.34 2.52 44.99 0.11 4.45 16 6 H 0.04 1.82 7.06 -2.39 -0.02 1.80 16 7 C -0.15 -3.60 9.48 71.98 0.68 -2.92 16 8 N -0.70 -16.80 4.45 -442.54 -1.97 -18.77 16 9 C 0.51 14.26 7.79 87.66 0.68 14.94 16 10 O -0.59 -23.57 15.70 -3.03 -0.05 -23.62 16 11 C -0.10 -1.68 5.60 29.10 0.16 -1.51 16 12 C -0.08 -1.76 4.38 -19.82 -0.09 -1.84 16 13 C -0.07 -1.30 9.65 22.30 0.22 -1.09 16 14 C 0.05 1.16 7.31 22.41 0.16 1.33 16 15 F -0.13 -2.83 17.18 44.97 0.77 -2.06 16 16 C 0.09 2.08 7.31 22.40 0.16 2.25 16 17 F -0.13 -3.17 17.18 44.97 0.77 -2.40 16 18 C -0.17 -4.06 10.00 22.35 0.22 -3.84 16 19 C 0.12 3.13 7.24 22.37 0.16 3.30 16 20 F -0.13 -4.34 16.56 44.97 0.74 -3.59 16 21 N -0.73 -35.89 4.49 -322.92 -1.45 -37.34 16 22 C -0.22 -12.45 9.93 84.03 0.83 -11.62 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 26 Si 0.96 48.27 29.55 68.60 2.03 50.30 16 27 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 28 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 29 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.42 6.32 8.60 -92.71 -0.80 5.52 16 39 H 0.12 1.93 7.79 -2.39 -0.02 1.91 16 40 H 0.16 1.08 8.05 -2.39 -0.02 1.06 16 41 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 44 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.70 387.07 5.39 -74.31 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.47 Total: 26.39 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.73 Total: -2.00 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -3.14 Total: -117.33 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.29 Total: -8.05 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -79.70 5.39 -74.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135549714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.292 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds