Wall clock time and date at job start Wed Apr 1 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46855 * 2 1 4 4 C 1.52997 * 109.47421 * 119.99959 * 2 1 3 5 5 C 1.52994 * 109.47440 * 185.00326 * 4 2 1 6 6 H 1.09000 * 109.47137 * 305.00341 * 5 4 2 7 7 C 1.53001 * 109.47396 * 185.00201 * 5 4 2 8 8 N 1.46500 * 109.47505 * 65.00001 * 5 4 2 9 9 C 1.34770 * 120.00479 * 205.00277 * 8 5 4 10 10 O 1.21528 * 119.99855 * 0.02562 * 9 8 5 11 11 C 1.48026 * 120.00318 * 179.97438 * 9 8 5 12 12 C 1.39903 * 119.80819 * 0.02562 * 11 9 8 13 13 C 1.36586 * 120.29830 * 179.97438 * 12 11 9 14 14 C 1.39425 * 119.86327 * 0.02562 * 13 12 11 15 15 C 1.40425 * 120.43940 * 359.97438 * 14 13 12 16 16 C 1.38896 * 119.36467 * 0.02562 * 15 14 13 17 17 O 1.34882 * 119.71430 * 179.97438 * 15 14 13 18 18 C 1.33681 * 122.43553 * 359.97438 * 17 15 14 19 19 C 1.34615 * 122.83974 * 359.97438 * 18 17 15 20 20 C 1.41929 * 119.60215 * 359.76834 * 19 18 17 21 21 O 1.21895 * 121.40030 * 180.02562 * 20 19 18 22 22 N 1.46498 * 109.47290 * 240.00214 * 2 1 3 23 23 C 1.36942 * 119.99968 * 85.00097 * 22 2 1 24 24 H 1.07998 * 120.00003 * 359.97438 * 23 22 2 25 25 C 1.38814 * 119.99906 * 180.02562 * 23 22 2 26 26 N 1.31618 * 120.00039 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99905 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46877 * 89.99976 * 27 25 23 29 29 H 1.48492 * 109.47116 * 209.99980 * 27 25 23 30 30 H 1.48501 * 109.46894 * 330.00027 * 27 25 23 31 31 H 1.09003 * 109.47233 * 299.99972 * 1 2 3 32 32 H 1.08993 * 109.47231 * 60.00154 * 1 2 3 33 33 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46973 * 65.00002 * 4 2 1 35 35 H 1.09007 * 109.47005 * 305.00541 * 4 2 1 36 36 H 1.08999 * 109.47356 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.46969 * 299.99627 * 7 5 4 38 38 H 1.08997 * 109.46950 * 59.99495 * 7 5 4 39 39 H 0.97008 * 119.99779 * 24.99932 * 8 5 4 40 40 H 1.08004 * 119.84873 * 359.97438 * 12 11 9 41 41 H 1.07993 * 120.06423 * 179.97438 * 13 12 11 42 42 H 1.08003 * 120.17164 * 179.97438 * 16 15 14 43 43 H 1.08000 * 118.58730 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.19977 * 180.02562 * 19 18 17 45 45 H 0.96997 * 120.00240 * 264.99888 * 22 2 1 46 46 H 0.96995 * 120.00357 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3868 7 6 4.0852 -1.4382 2.4924 8 7 3.9480 0.7895 1.4925 9 6 5.1611 1.2137 1.0868 10 8 5.9371 0.4327 0.5722 11 6 5.5480 2.6311 1.2669 12 6 4.6513 3.5268 1.8593 13 6 4.9981 4.8367 2.0309 14 6 6.2511 5.2836 1.6134 15 6 7.1609 4.3954 1.0173 16 6 6.8011 3.0648 0.8462 17 8 8.3689 4.8436 0.6184 18 6 8.7460 6.1175 0.7668 19 6 7.9542 7.0530 1.3237 20 6 6.6572 6.6951 1.7755 21 8 5.9130 7.5157 2.2840 22 7 2.0184 -0.6905 -1.1962 23 6 2.1492 -0.0073 -2.3757 24 1 1.8919 1.0404 -2.4243 25 6 2.6114 -0.6618 -3.5093 26 7 2.9244 -1.9389 -3.4502 27 14 2.7892 0.2700 -5.1185 28 1 4.1515 0.8550 -5.2038 29 1 2.5784 -0.6614 -6.2557 30 1 1.7791 1.3571 -5.1752 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 1.2055 35 1 1.6053 -0.2617 2.1370 36 1 5.1715 -1.3609 2.5386 37 1 3.6547 -1.0593 3.4193 38 1 3.8002 -2.4818 2.3594 39 1 3.3284 1.4130 1.9029 40 1 3.6805 3.1810 2.1825 41 1 4.3029 5.5250 2.4883 42 1 7.4905 2.3706 0.3889 43 1 9.7282 6.4088 0.4253 44 1 8.3021 8.0706 1.4222 45 1 2.2491 -1.6317 -1.1527 46 1 3.2478 -2.3961 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135944076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:07 Heat of formation + Delta-G solvation = -46.950843 kcal Electronic energy + Delta-G solvation = -29731.577611 eV Core-core repulsion = 25587.599185 eV Total energy + Delta-G solvation = -4143.978426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17715 -40.06185 -38.96115 -37.97333 -36.77684 -34.56004 -33.11918 -32.40852 -31.70920 -31.12508 -30.22291 -28.60072 -26.36951 -25.42866 -25.00894 -23.61851 -22.68825 -21.88343 -20.77457 -19.76934 -19.31274 -18.71284 -18.03122 -17.26343 -16.82091 -16.65241 -16.15129 -15.86598 -14.93471 -14.85262 -14.69322 -14.47200 -14.37004 -14.26260 -14.16424 -13.93690 -13.67113 -13.26970 -13.11715 -12.79024 -12.72538 -12.52466 -12.16093 -12.03053 -11.75463 -11.62779 -11.55318 -11.07022 -10.82295 -10.63194 -10.45789 -10.23255 -10.12771 -10.05943 -9.91174 -9.81838 -9.61445 -9.46087 -8.87732 -8.82176 -8.75506 -6.91843 -5.72514 -3.00536 0.00120 0.43841 1.14538 1.96381 2.29748 3.10385 3.24123 3.46145 3.51107 3.52364 3.64140 3.70824 4.05046 4.24130 4.47062 4.60987 4.62924 4.71393 4.86949 4.98075 5.09079 5.27237 5.36023 5.43777 5.48190 5.52570 5.57822 5.61660 5.66048 5.85395 5.87755 5.90500 5.93345 5.99423 6.10121 6.15098 6.27145 6.32365 6.41693 6.54532 6.64721 6.75411 6.84987 6.88972 7.06233 7.28174 7.63305 7.73162 8.34053 8.45920 9.57363 10.14256 10.48395 11.50191 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.003115 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.570145 B = 8988.021711 C =10098.920796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.143 3.857 6 H 0.109 0.891 7 C -0.161 4.161 8 N -0.706 5.706 9 C 0.555 3.445 10 O -0.518 6.518 11 C -0.061 4.061 12 C -0.116 4.116 13 C -0.038 4.038 14 C -0.208 4.208 15 C 0.134 3.866 16 C -0.080 4.080 17 O -0.219 6.219 18 C 0.142 3.858 19 C -0.334 4.334 20 C 0.421 3.579 21 O -0.471 6.471 22 N -0.720 5.720 23 C -0.235 4.235 24 H 0.067 0.933 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.901 3.099 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.395 0.605 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.202 0.798 44 H 0.160 0.840 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.320 12.560 15.312 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.127 0.873 7 C -0.220 4.220 8 N -0.357 5.357 9 C 0.340 3.660 10 O -0.394 6.394 11 C -0.064 4.064 12 C -0.135 4.135 13 C -0.056 4.056 14 C -0.210 4.210 15 C 0.090 3.910 16 C -0.100 4.100 17 O -0.123 6.123 18 C 0.076 3.924 19 C -0.354 4.354 20 C 0.306 3.694 21 O -0.353 6.353 22 N -0.362 5.362 23 C -0.366 4.366 24 H 0.085 0.915 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.733 3.267 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.176 0.824 43 H 0.219 0.781 44 H 0.178 0.822 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.626 12.323 14.950 21.208 hybrid contribution -0.209 0.720 -0.817 1.109 sum 8.417 13.043 14.133 20.993 Atomic orbital electron populations 1.22460 0.99495 1.00840 0.99796 1.20226 0.91621 0.95499 0.86559 0.93690 1.22185 0.93507 1.02439 0.98901 1.21113 0.95325 0.79476 1.00139 0.87340 1.22187 1.01572 1.00289 0.97919 1.45887 1.15884 1.12058 1.61871 1.17981 0.82621 0.86582 0.78790 1.90824 1.51024 1.55519 1.42077 1.20072 0.93752 0.94599 0.98013 1.21122 0.99826 0.93067 0.99436 1.20755 0.94146 0.95609 0.95104 1.20971 0.97070 0.96474 1.06482 1.19081 0.82721 0.93226 0.95991 1.20551 0.96889 0.92205 1.00315 1.83076 1.31997 1.27196 1.70048 1.23950 0.98567 0.79625 0.90241 1.22776 0.98004 1.02591 1.12033 1.18647 0.87206 0.86624 0.76900 1.90719 1.55217 1.52471 1.36866 1.42391 1.77981 1.10553 1.05263 1.19149 1.36493 0.93657 0.87346 0.91528 1.24683 1.02180 0.95905 0.97908 1.69640 1.50895 1.08586 1.28815 0.86275 0.77780 0.78648 0.84016 1.21782 1.21811 1.20897 0.94714 0.92885 0.93501 0.90399 0.91969 0.92444 0.93047 0.91523 0.77036 0.84230 0.83535 0.82361 0.78106 0.82228 0.78326 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.12 2.84 -67.93 -0.19 2.92 16 3 H 0.05 0.84 7.56 -51.93 -0.39 0.44 16 4 C -0.13 -1.89 4.29 -26.74 -0.11 -2.00 16 5 C 0.14 2.18 2.52 -67.93 -0.17 2.01 16 6 H 0.11 2.20 7.05 -51.93 -0.37 1.83 16 7 C -0.16 -2.07 9.48 37.16 0.35 -1.71 16 8 N -0.71 -9.63 4.40 -54.70 -0.24 -9.87 16 9 C 0.56 8.71 7.74 -12.25 -0.09 8.62 16 10 O -0.52 -10.28 15.98 5.34 0.09 -10.19 16 11 C -0.06 -0.78 5.87 -104.93 -0.62 -1.40 16 12 C -0.12 -1.20 9.47 -39.56 -0.37 -1.57 16 13 C -0.04 -0.41 9.60 -39.74 -0.38 -0.79 16 14 C -0.21 -2.41 5.89 -104.74 -0.62 -3.03 16 15 C 0.13 1.52 6.77 -38.51 -0.26 1.26 16 16 C -0.08 -1.01 9.56 -39.01 -0.37 -1.38 16 17 O -0.22 -2.03 9.73 5.73 0.06 -1.97 16 18 C 0.14 0.88 11.25 29.45 0.33 1.22 16 19 C -0.33 -2.74 10.00 -39.45 -0.39 -3.13 16 20 C 0.42 4.98 7.00 -34.28 -0.24 4.74 16 21 O -0.47 -6.86 17.39 5.01 0.09 -6.77 16 22 N -0.72 -17.26 4.49 -53.43 -0.24 -17.50 16 23 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 26 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 27 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.39 4.13 6.60 -40.82 -0.27 3.87 16 40 H 0.14 1.07 6.36 -52.48 -0.33 0.73 16 41 H 0.15 1.38 7.80 -52.49 -0.41 0.97 16 42 H 0.16 2.01 7.63 -52.48 -0.40 1.61 16 43 H 0.20 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.38 9.86 7.80 -40.82 -0.32 9.55 16 46 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -35.57 391.31 -7.96 -43.52 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.26 Total: 10.31 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -3.04 Total: -3.72 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.24 Total: -54.82 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.23 Total: -18.94 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.57 -7.96 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.428 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds