Wall clock time and date at job start Wed Apr 1 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46855 * 2 1 4 4 C 1.52997 * 109.47421 * 119.99959 * 2 1 3 5 5 C 1.52994 * 109.47440 * 185.00326 * 4 2 1 6 6 H 1.09000 * 109.47137 * 305.00341 * 5 4 2 7 7 C 1.53001 * 109.47396 * 185.00201 * 5 4 2 8 8 N 1.46500 * 109.47505 * 65.00001 * 5 4 2 9 9 C 1.34770 * 120.00479 * 205.00277 * 8 5 4 10 10 O 1.21528 * 119.99855 * 0.02562 * 9 8 5 11 11 C 1.48026 * 120.00318 * 179.97438 * 9 8 5 12 12 C 1.39903 * 119.80819 * 0.02562 * 11 9 8 13 13 C 1.36586 * 120.29830 * 179.97438 * 12 11 9 14 14 C 1.39425 * 119.86327 * 0.02562 * 13 12 11 15 15 C 1.40425 * 120.43940 * 359.97438 * 14 13 12 16 16 C 1.38896 * 119.36467 * 0.02562 * 15 14 13 17 17 O 1.34882 * 119.71430 * 179.97438 * 15 14 13 18 18 C 1.33681 * 122.43553 * 359.97438 * 17 15 14 19 19 C 1.34615 * 122.83974 * 359.97438 * 18 17 15 20 20 C 1.41929 * 119.60215 * 359.76834 * 19 18 17 21 21 O 1.21895 * 121.40030 * 180.02562 * 20 19 18 22 22 N 1.46498 * 109.47290 * 240.00214 * 2 1 3 23 23 C 1.36942 * 119.99968 * 85.00097 * 22 2 1 24 24 H 1.07998 * 120.00003 * 359.97438 * 23 22 2 25 25 C 1.38814 * 119.99906 * 180.02562 * 23 22 2 26 26 N 1.31618 * 120.00039 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99905 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46877 * 89.99976 * 27 25 23 29 29 H 1.48492 * 109.47116 * 209.99980 * 27 25 23 30 30 H 1.48501 * 109.46894 * 330.00027 * 27 25 23 31 31 H 1.09003 * 109.47233 * 299.99972 * 1 2 3 32 32 H 1.08993 * 109.47231 * 60.00154 * 1 2 3 33 33 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46973 * 65.00002 * 4 2 1 35 35 H 1.09007 * 109.47005 * 305.00541 * 4 2 1 36 36 H 1.08999 * 109.47356 * 180.02562 * 7 5 4 37 37 H 1.08999 * 109.46969 * 299.99627 * 7 5 4 38 38 H 1.08997 * 109.46950 * 59.99495 * 7 5 4 39 39 H 0.97008 * 119.99779 * 24.99932 * 8 5 4 40 40 H 1.08004 * 119.84873 * 359.97438 * 12 11 9 41 41 H 1.07993 * 120.06423 * 179.97438 * 13 12 11 42 42 H 1.08003 * 120.17164 * 179.97438 * 16 15 14 43 43 H 1.08000 * 118.58730 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.19977 * 180.02562 * 19 18 17 45 45 H 0.96997 * 120.00240 * 264.99888 * 22 2 1 46 46 H 0.96995 * 120.00357 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9921 0.3868 7 6 4.0852 -1.4382 2.4924 8 7 3.9480 0.7895 1.4925 9 6 5.1611 1.2137 1.0868 10 8 5.9371 0.4327 0.5722 11 6 5.5480 2.6311 1.2669 12 6 4.6513 3.5268 1.8593 13 6 4.9981 4.8367 2.0309 14 6 6.2511 5.2836 1.6134 15 6 7.1609 4.3954 1.0173 16 6 6.8011 3.0648 0.8462 17 8 8.3689 4.8436 0.6184 18 6 8.7460 6.1175 0.7668 19 6 7.9542 7.0530 1.3237 20 6 6.6572 6.6951 1.7755 21 8 5.9130 7.5157 2.2840 22 7 2.0184 -0.6905 -1.1962 23 6 2.1492 -0.0073 -2.3757 24 1 1.8919 1.0404 -2.4243 25 6 2.6114 -0.6618 -3.5093 26 7 2.9244 -1.9389 -3.4502 27 14 2.7892 0.2700 -5.1185 28 1 4.1515 0.8550 -5.2038 29 1 2.5784 -0.6614 -6.2557 30 1 1.7791 1.3571 -5.1752 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 1.2055 35 1 1.6053 -0.2617 2.1370 36 1 5.1715 -1.3609 2.5386 37 1 3.6547 -1.0593 3.4193 38 1 3.8002 -2.4818 2.3594 39 1 3.3284 1.4130 1.9029 40 1 3.6805 3.1810 2.1825 41 1 4.3029 5.5250 2.4883 42 1 7.4905 2.3706 0.3889 43 1 9.7282 6.4088 0.4253 44 1 8.3021 8.0706 1.4222 45 1 2.2491 -1.6317 -1.1527 46 1 3.2478 -2.3961 -4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135944076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:06 Heat of formation + Delta-G solvation = -70.951171 kcal Electronic energy + Delta-G solvation = -29732.618343 eV Core-core repulsion = 25587.599185 eV Total energy + Delta-G solvation = -4145.019159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.96785 -41.21507 -39.84362 -38.99166 -38.16178 -36.11941 -34.08957 -33.86542 -32.95681 -31.99567 -31.35018 -30.37746 -27.58835 -26.37912 -25.77481 -25.63337 -23.59603 -22.92471 -22.01835 -21.21267 -20.34129 -19.50580 -19.23682 -18.80322 -17.85329 -17.42723 -17.31828 -16.81228 -16.65081 -16.09497 -15.75447 -15.59578 -15.44331 -15.29399 -15.27739 -15.18476 -15.01530 -14.49834 -14.31897 -14.14757 -13.63376 -13.51208 -13.48655 -13.32924 -13.14271 -12.94083 -12.79445 -12.64249 -12.41611 -12.24770 -12.17662 -11.81086 -11.54891 -11.40791 -11.16602 -10.94248 -10.89814 -10.77378 -10.45482 -10.01727 -9.57310 -8.93216 -7.91121 -5.16014 -0.93053 -0.31087 0.33306 1.24192 1.36014 1.42823 1.44840 1.51746 2.08281 2.17720 2.56759 2.67780 2.89922 3.22486 3.43544 3.49892 3.71301 3.76762 3.85376 3.87004 4.02839 4.06660 4.15335 4.25816 4.42363 4.56108 4.57477 4.59826 4.69995 4.74246 4.81597 4.85633 4.89790 4.95477 4.97713 5.06175 5.11788 5.13010 5.24663 5.31614 5.37519 5.42924 5.52078 5.62017 5.66216 6.10982 6.32471 6.43957 6.51460 7.19585 7.38364 8.19084 8.38208 9.32664 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.003115 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.570145 B = 8988.021711 C =10098.920796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.119 4.119 5 C 0.146 3.854 6 H 0.051 0.949 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.551 3.449 10 O -0.572 6.572 11 C -0.075 4.075 12 C -0.103 4.103 13 C -0.039 4.039 14 C -0.219 4.219 15 C 0.136 3.864 16 C -0.093 4.093 17 O -0.223 6.223 18 C 0.166 3.834 19 C -0.353 4.353 20 C 0.411 3.589 21 O -0.511 6.511 22 N -0.731 5.731 23 C -0.225 4.225 24 H 0.069 0.931 25 C -0.076 4.076 26 N -0.968 5.968 27 Si 0.958 3.042 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.269 1.269 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.413 0.587 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.259 0.741 44 H 0.181 0.819 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 14.615 17.074 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.069 0.931 7 C -0.210 4.210 8 N -0.344 5.344 9 C 0.337 3.663 10 O -0.452 6.452 11 C -0.078 4.078 12 C -0.121 4.121 13 C -0.057 4.057 14 C -0.221 4.221 15 C 0.091 3.909 16 C -0.112 4.112 17 O -0.126 6.126 18 C 0.101 3.899 19 C -0.373 4.373 20 C 0.300 3.700 21 O -0.397 6.397 22 N -0.372 5.372 23 C -0.357 4.357 24 H 0.087 0.913 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.788 3.212 28 H -0.224 1.224 29 H -0.222 1.222 30 H -0.194 1.194 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.252 0.748 40 H 0.188 0.812 41 H 0.178 0.822 42 H 0.165 0.835 43 H 0.274 0.726 44 H 0.198 0.802 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.120 14.428 16.761 23.559 hybrid contribution -0.028 0.141 -1.295 1.303 sum 8.092 14.569 15.466 22.736 Atomic orbital electron populations 1.22315 0.97785 1.00859 1.00721 1.20545 0.92617 0.95354 0.86058 0.93755 1.22099 0.92517 1.02481 0.98601 1.20920 0.95835 0.80404 0.98721 0.93112 1.22091 1.00498 1.00322 0.98099 1.45763 1.15606 1.11955 1.61090 1.18440 0.82565 0.87410 0.77854 1.90796 1.52643 1.57158 1.44641 1.19921 0.94684 0.93385 0.99803 1.21325 1.00335 0.92392 0.98085 1.20985 0.94142 0.95862 0.94709 1.21236 0.97600 0.96794 1.06441 1.18956 0.83513 0.92653 0.95813 1.20542 0.97000 0.92845 1.00840 1.83125 1.30922 1.28972 1.69627 1.24946 0.99753 0.77672 0.87504 1.22875 0.96793 1.04236 1.13365 1.19104 0.88349 0.86249 0.76287 1.90699 1.56562 1.53185 1.39258 1.42602 1.78179 1.10111 1.06261 1.19498 1.33932 0.93758 0.88511 0.91277 1.25391 1.03634 0.96781 1.01045 1.69787 1.53104 1.10025 1.29045 0.85357 0.77527 0.77717 0.80569 1.22355 1.22231 1.19394 0.90379 0.95320 0.93953 0.90360 0.87207 0.94230 0.89743 0.91042 0.74846 0.81235 0.82179 0.83487 0.72584 0.80173 0.79801 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.49 71.98 0.68 -4.24 16 2 C 0.16 5.65 2.84 44.99 0.13 5.78 16 3 H 0.04 1.56 7.56 -2.39 -0.02 1.54 16 4 C -0.12 -3.11 4.29 30.59 0.13 -2.97 16 5 C 0.15 4.35 2.52 44.99 0.11 4.46 16 6 H 0.05 2.16 7.05 -2.39 -0.02 2.14 16 7 C -0.15 -3.69 9.48 71.98 0.68 -3.01 16 8 N -0.69 -18.14 4.40 -445.26 -1.96 -20.09 16 9 C 0.55 17.59 7.74 86.84 0.67 18.26 16 10 O -0.57 -24.07 15.98 -3.80 -0.06 -24.13 16 11 C -0.07 -1.91 5.87 -20.07 -0.12 -2.03 16 12 C -0.10 -1.96 9.47 22.29 0.21 -1.75 16 13 C -0.04 -0.78 9.60 22.17 0.21 -0.56 16 14 C -0.22 -4.88 5.89 -19.94 -0.12 -4.99 16 15 C 0.14 2.99 6.77 22.96 0.16 3.14 16 16 C -0.09 -2.38 9.56 22.64 0.22 -2.16 16 17 O -0.22 -3.74 9.73 -2.41 -0.02 -3.76 16 18 C 0.17 1.55 11.25 66.99 0.75 2.30 16 19 C -0.35 -5.02 10.00 22.35 0.22 -4.79 16 20 C 0.41 9.37 7.00 25.71 0.18 9.55 16 21 O -0.51 -14.77 17.39 -4.98 -0.09 -14.86 16 22 N -0.73 -35.46 4.49 -322.94 -1.45 -36.91 16 23 C -0.22 -12.46 9.93 84.03 0.83 -11.62 16 24 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 25 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 26 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 27 Si 0.96 47.75 29.55 68.60 2.03 49.78 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 29 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 30 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 7.44 6.60 -92.70 -0.61 6.83 16 40 H 0.17 2.03 6.36 -2.91 -0.02 2.02 16 41 H 0.16 2.74 7.80 -2.91 -0.02 2.72 16 42 H 0.15 4.01 7.63 -2.91 -0.02 3.99 16 43 H 0.26 -0.64 8.06 -2.91 -0.02 -0.67 16 44 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.37 19.68 7.80 -92.71 -0.72 18.95 16 46 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -83.32 391.31 3.85 -79.46 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.31 Total: 29.52 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.43 Total: 1.34 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -3.13 Total: -117.35 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.17 Total: -42.75 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -83.32 3.85 -79.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135944076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.514 kcal (2) G-P(sol) polarization free energy of solvation -83.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds