Wall clock time and date at job start Wed Apr 1 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.43668 * 2 1 4 4 O 1.43014 * 109.44935 * 240.05703 * 2 1 3 5 5 C 1.36029 * 116.66321 * 286.32945 * 4 2 1 6 6 C 1.37981 * 120.54543 * 147.14025 * 5 4 2 7 7 C 1.39791 * 119.76518 * 180.13725 * 6 5 4 8 8 C 1.47608 * 120.02798 * 179.97438 * 7 6 5 9 9 O 1.21589 * 120.00040 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00382 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00425 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.35337 * 324.83266 * 11 10 8 13 13 C 1.52963 * 109.40821 * 84.64845 * 11 10 8 14 14 C 1.53236 * 109.40035 * 183.70635 * 13 11 10 15 15 C 1.51268 * 108.53762 * 305.37197 * 14 13 11 16 16 C 1.37877 * 120.85152 * 231.34986 * 15 14 13 17 17 N 1.31515 * 119.99892 * 0.02562 * 16 15 14 18 18 Si 1.86798 * 120.00198 * 179.97438 * 16 15 14 19 19 H 1.48503 * 109.46695 * 59.99774 * 18 16 15 20 20 H 1.48499 * 109.47059 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47109 * 300.00376 * 18 16 15 22 22 C 1.51297 * 118.30526 * 51.34945 * 15 14 13 23 23 C 1.52953 * 109.41521 * 205.00004 * 11 10 8 24 24 C 1.39718 * 119.94293 * 0.26752 * 7 6 5 25 25 C 1.37817 * 120.05469 * 359.41303 * 24 7 6 26 26 C 1.38814 * 120.01950 * 0.58272 * 25 24 7 27 27 N 1.39755 * 120.55163 * 179.75816 * 26 25 24 28 28 C 1.35053 * 119.07696 * 195.55198 * 27 26 25 29 29 O 1.21284 * 120.11312 * 181.57996 * 28 27 26 30 30 H 1.09001 * 109.46925 * 300.06749 * 1 2 3 31 31 H 1.09003 * 109.46712 * 60.05906 * 1 2 3 32 32 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 33 33 H 1.08000 * 120.11295 * 0.16304 * 6 5 4 34 34 H 0.96997 * 119.99794 * 0.02562 * 10 8 7 35 35 H 1.08994 * 109.48627 * 303.68371 * 13 11 10 36 36 H 1.08995 * 109.48314 * 63.73014 * 13 11 10 37 37 H 1.08999 * 109.62901 * 65.09097 * 14 13 11 38 38 H 1.09004 * 109.61975 * 185.66003 * 14 13 11 39 39 H 0.97001 * 120.00351 * 180.02562 * 17 16 15 40 40 H 1.08998 * 109.64332 * 188.94879 * 22 15 14 41 41 H 1.08992 * 109.62506 * 68.36190 * 22 15 14 42 42 H 1.09002 * 109.48451 * 296.27886 * 23 11 10 43 43 H 1.08999 * 109.48225 * 56.30776 * 23 11 10 44 44 H 1.08007 * 119.97016 * 179.68059 * 24 7 6 45 45 H 1.07995 * 119.98474 * 180.27779 * 25 24 7 46 46 H 0.96996 * 120.45864 * 15.57326 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 8 2.0062 -0.6731 -1.1685 5 6 1.8872 -2.0281 -1.1836 6 6 1.6581 -2.6988 -2.3675 7 6 1.5357 -4.0913 -2.3638 8 6 1.2900 -4.8146 -3.6268 9 8 1.1947 -4.1993 -4.6711 10 7 1.1715 -6.1571 -3.6226 11 6 0.9272 -6.8750 -4.8760 12 1 0.2874 -6.2710 -5.5193 13 6 2.2594 -7.1330 -5.5820 14 6 1.9970 -7.8010 -6.9359 15 6 1.1626 -9.0417 -6.7063 16 6 1.5469 -10.2588 -7.2280 17 7 2.6518 -10.3517 -7.9352 18 14 0.4989 -11.7759 -6.9293 19 1 -0.8589 -11.5578 -7.4898 20 1 1.1250 -12.9483 -7.5917 21 1 0.3970 -12.0275 -5.4693 22 6 -0.1044 -8.9132 -5.8895 23 6 0.2344 -8.2047 -4.5737 24 6 1.6398 -4.7973 -1.1626 25 6 1.8751 -4.1231 0.0161 26 6 1.9969 -2.7403 0.0129 27 7 2.2306 -2.0449 1.2024 28 6 2.0320 -0.7094 1.2318 29 8 2.2564 -0.0830 2.2459 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8906 32 1 -0.3634 -1.0276 0.0005 33 1 1.5742 -2.1498 -3.2938 34 1 1.2472 -6.6480 -2.7894 35 1 2.7775 -6.1869 -5.7378 36 1 2.8759 -7.7883 -4.9667 37 1 1.4575 -7.1120 -7.5857 38 1 2.9450 -8.0776 -7.3974 39 1 2.9220 -11.2078 -8.3026 40 1 -0.5066 -9.9041 -5.6787 41 1 -0.8385 -8.3271 -6.4424 42 1 0.8989 -8.8346 -3.9822 43 1 -0.6825 -8.0181 -4.0148 44 1 1.5401 -5.8728 -1.1584 45 1 1.9599 -4.6704 0.9433 46 1 2.5315 -2.5149 1.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151203692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:48 Heat of formation + Delta-G solvation = -92.370416 kcal Electronic energy + Delta-G solvation = -29506.611676 eV Core-core repulsion = 25360.663709 eV Total energy + Delta-G solvation = -4145.947967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07086 -40.02942 -38.99769 -37.86869 -36.76582 -35.49476 -33.84295 -32.50311 -31.66251 -30.81712 -29.80876 -29.52664 -27.24075 -25.38753 -24.51899 -23.65061 -22.09257 -21.71751 -20.90834 -19.75074 -19.59822 -19.14564 -18.37855 -17.42537 -16.77916 -16.43943 -16.02816 -15.89793 -15.70885 -15.17039 -14.77978 -14.67778 -14.47079 -14.33770 -14.18034 -13.59480 -13.44686 -13.19870 -13.15952 -12.89690 -12.69911 -12.66569 -12.19788 -12.10199 -11.80000 -11.68157 -11.61781 -11.19561 -11.05887 -10.82130 -10.76239 -10.50118 -10.38741 -9.96573 -9.78890 -9.69561 -9.15680 -9.12900 -8.86010 -8.50189 -8.47308 -8.29430 -6.11968 -4.03637 0.30781 0.83993 1.68826 2.21391 2.66839 2.83982 3.24957 3.32773 3.33362 3.40631 3.44649 3.64259 4.10503 4.22285 4.35260 4.35881 4.53096 4.63001 4.81873 4.86971 5.02159 5.10092 5.14652 5.32143 5.47514 5.51670 5.60287 5.67422 5.82678 5.88290 6.01361 6.06764 6.12473 6.26908 6.42816 6.45586 6.64694 6.71699 6.77935 6.81888 6.93433 7.06470 7.19263 7.22876 7.34847 7.60899 7.72651 7.80610 7.85961 8.36763 8.44342 8.94774 9.51615 10.97590 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030290 B = 0.002054 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.184822 B =13626.154234 C =13911.751387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.153 0.847 4 O -0.295 6.295 5 C 0.070 3.930 6 C -0.049 4.049 7 C -0.116 4.116 8 C 0.553 3.447 9 O -0.534 6.534 10 N -0.717 5.717 11 C 0.154 3.846 12 H 0.081 0.919 13 C -0.114 4.114 14 C 0.012 3.988 15 C -0.491 4.491 16 C 0.076 3.924 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.275 1.275 22 C -0.007 4.007 23 C -0.114 4.114 24 C -0.075 4.075 25 C -0.130 4.130 26 C 0.111 3.889 27 N -0.656 5.656 28 C 0.497 3.503 29 O -0.509 6.509 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.392 0.608 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.006 0.994 38 H 0.059 0.941 39 H 0.265 0.735 40 H 0.028 0.972 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 15.053 19.305 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 H 0.170 0.830 4 O -0.209 6.209 5 C 0.024 3.976 6 C -0.068 4.068 7 C -0.120 4.120 8 C 0.339 3.661 9 O -0.412 6.412 10 N -0.366 5.366 11 C 0.052 3.948 12 H 0.099 0.901 13 C -0.153 4.153 14 C -0.026 4.026 15 C -0.510 4.510 16 C -0.127 4.127 17 N -0.525 5.525 18 Si 0.719 3.281 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.045 4.045 23 C -0.152 4.152 24 C -0.095 4.095 25 C -0.150 4.150 26 C 0.014 3.986 27 N -0.303 5.303 28 C 0.284 3.716 29 O -0.383 6.383 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.227 0.773 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.057 15.972 18.743 24.815 hybrid contribution -0.269 -1.540 1.269 2.014 sum -3.326 14.432 20.013 24.897 Atomic orbital electron populations 1.22361 0.92154 1.04195 1.04876 1.22914 0.96809 0.97631 0.80790 0.83010 1.86382 1.78970 1.15848 1.39720 1.18367 1.04151 0.82766 0.92326 1.20612 0.96088 0.92903 0.97243 1.19942 1.04692 0.93278 0.94076 1.17993 0.77555 0.82605 0.87942 1.90803 1.50271 1.67498 1.32596 1.46336 1.72083 1.06130 1.12083 1.21108 0.98333 0.92286 0.83106 0.90125 1.21972 0.94728 0.98502 1.00129 1.19349 0.98644 0.93624 0.90990 1.20035 1.05780 0.93771 1.31436 1.24850 0.94837 0.98271 0.94698 1.69825 1.22587 1.25629 1.34486 0.86666 0.80660 0.82332 0.78430 1.20009 1.21872 1.20036 1.19582 0.97181 0.95467 0.92318 1.21869 0.97876 0.95159 1.00333 1.21178 0.97135 1.00342 0.90836 1.20537 1.04017 0.90910 0.99573 1.18190 1.02667 0.92562 0.85157 1.43657 1.65671 1.08196 1.12757 1.21537 0.77119 0.82049 0.90914 1.90812 1.48997 1.65025 1.33492 0.89885 0.89231 0.91401 0.82819 0.77325 0.94539 0.93187 0.97528 0.92283 0.92494 0.95358 0.96027 0.92459 0.94292 0.84337 0.84268 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 9.30 37.16 0.35 -0.73 16 2 C 0.08 0.59 3.81 -27.86 -0.11 0.48 16 3 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 4 O -0.29 -2.85 10.18 -19.83 -0.20 -3.06 16 5 C 0.07 0.70 5.84 -39.14 -0.23 0.48 16 6 C -0.05 -0.55 9.53 -39.10 -0.37 -0.92 16 7 C -0.12 -1.33 5.88 -104.94 -0.62 -1.95 16 8 C 0.55 8.43 7.72 -12.44 -0.10 8.34 16 9 O -0.53 -10.28 16.00 5.29 0.08 -10.19 16 10 N -0.72 -10.46 5.02 -54.87 -0.28 -10.74 16 11 C 0.15 2.85 2.35 -67.97 -0.16 2.69 16 12 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 13 C -0.11 -2.43 5.50 -26.63 -0.15 -2.57 16 14 C 0.01 0.29 5.97 -27.48 -0.16 0.13 16 15 C -0.49 -12.56 5.51 -98.91 -0.55 -13.11 16 16 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 17 N -0.89 -25.15 12.73 55.43 0.71 -24.45 16 18 Si 0.89 20.60 26.80 -169.99 -4.56 16.04 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.01 -0.16 5.59 -27.47 -0.15 -0.32 16 23 C -0.11 -2.08 5.40 -26.63 -0.14 -2.23 16 24 C -0.08 -0.63 9.53 -39.18 -0.37 -1.01 16 25 C -0.13 -0.92 9.92 -39.52 -0.39 -1.31 16 26 C 0.11 0.93 6.55 -83.50 -0.55 0.39 16 27 N -0.66 -5.02 5.45 -9.65 -0.05 -5.08 16 28 C 0.50 4.52 7.19 -10.83 -0.08 4.45 16 29 O -0.51 -6.00 17.95 5.55 0.10 -5.90 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.46 7.81 -51.93 -0.41 0.05 16 33 H 0.15 1.84 7.65 -52.49 -0.40 1.44 16 34 H 0.39 4.40 6.61 -40.82 -0.27 4.13 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.61 5.17 -51.93 -0.27 0.34 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.14 0.88 6.38 -52.48 -0.33 0.54 16 45 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.42 2.36 8.88 -40.82 -0.36 1.99 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -32.36 373.30 -8.61 -40.98 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.17 Total: 2.01 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.88 Total: -5.24 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.38 Total: -40.26 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.02 Total: -19.15 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.56 Total: 16.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.36 -8.61 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151203692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.395 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds