Wall clock time and date at job start Wed Apr 1 2020 02:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.45445 * 2 1 4 4 O 1.43013 * 109.43049 * 119.93771 * 2 1 3 5 5 C 1.36034 * 116.66380 * 166.39194 * 4 2 1 6 6 C 1.37976 * 120.54641 * 147.15137 * 5 4 2 7 7 C 1.39793 * 119.76854 * 180.14148 * 6 5 4 8 8 C 1.47603 * 120.03127 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99816 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00367 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00415 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.35412 * 35.17062 * 11 10 8 13 13 C 1.52956 * 109.41777 * 154.99978 * 11 10 8 14 14 C 1.53221 * 109.40807 * 183.70282 * 13 11 10 15 15 C 1.51269 * 108.53837 * 305.37110 * 14 13 11 16 16 C 1.37877 * 120.85332 * 231.32482 * 15 14 13 17 17 N 1.31509 * 119.99875 * 5.66756 * 16 15 14 18 18 Si 1.86806 * 120.00104 * 185.66674 * 16 15 14 19 19 H 1.48500 * 109.46878 * 270.00091 * 18 16 15 20 20 H 1.48496 * 109.46929 * 150.00029 * 18 16 15 21 21 H 1.48498 * 109.46979 * 29.99904 * 18 16 15 22 22 C 1.51277 * 118.29783 * 51.59802 * 15 14 13 23 23 C 1.52965 * 109.40846 * 275.35077 * 11 10 8 24 24 C 1.39726 * 119.93685 * 0.26430 * 7 6 5 25 25 C 1.37804 * 120.05840 * 359.44714 * 24 7 6 26 26 C 1.38819 * 120.01925 * 0.52381 * 25 24 7 27 27 N 1.39759 * 120.55577 * 179.82024 * 26 25 24 28 28 C 1.35046 * 119.07461 * 195.57790 * 27 26 25 29 29 O 1.21290 * 120.11508 * 181.56066 * 28 27 26 30 30 H 1.08999 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47294 * 299.95449 * 1 2 3 32 32 H 1.08997 * 109.46994 * 59.95312 * 1 2 3 33 33 H 1.08000 * 120.11594 * 0.12098 * 6 5 4 34 34 H 0.97004 * 120.00204 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.48347 * 63.72088 * 13 11 10 36 36 H 1.09004 * 109.49539 * 303.69040 * 13 11 10 37 37 H 1.08999 * 109.62967 * 185.65809 * 14 13 11 38 38 H 1.09000 * 109.62796 * 65.08174 * 14 13 11 39 39 H 0.97000 * 120.00152 * 354.39508 * 17 16 15 40 40 H 1.08994 * 109.62791 * 68.11350 * 22 15 14 41 41 H 1.08999 * 109.62410 * 188.69078 * 22 15 14 42 42 H 1.09000 * 109.48295 * 296.27376 * 23 11 10 43 43 H 1.08998 * 109.48514 * 56.30367 * 23 11 10 44 44 H 1.08008 * 119.96575 * 179.71094 * 24 7 6 45 45 H 1.07995 * 119.99199 * 180.28477 * 25 24 7 46 46 H 0.97006 * 120.46268 * 15.55056 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 8 2.0057 -0.6731 1.1687 5 6 3.3230 -1.0121 1.1842 6 6 4.0313 -1.0196 2.3683 7 6 5.3852 -1.3677 2.3651 8 6 6.1485 -1.3771 3.6283 9 8 5.5999 -1.0816 4.6723 10 7 7.4538 -1.7124 3.6245 11 6 8.2114 -1.7223 4.8784 12 1 7.5633 -2.0546 5.6893 13 6 9.3963 -2.6808 4.7491 14 6 10.1345 -2.7615 6.0893 15 6 10.5104 -1.3600 6.5166 16 6 11.8047 -1.0550 6.8808 17 7 12.7534 -1.9568 6.7538 18 14 12.2108 0.6393 7.5548 19 1 12.5767 1.5429 6.4346 20 1 13.3514 0.5356 8.5000 21 1 11.0271 1.1860 8.2654 22 6 9.4284 -0.3029 6.5400 23 6 8.7171 -0.3100 5.1779 24 6 6.0166 -1.7009 1.1640 25 6 5.3031 -1.6975 -0.0150 26 6 3.9585 -1.3525 -0.0121 27 7 3.2251 -1.3417 -1.2018 28 6 2.0320 -0.7098 -1.2315 29 8 1.3669 -0.7128 -2.2458 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5131 0.8904 32 1 -0.3633 0.5145 -0.8895 33 1 3.5415 -0.7571 3.2944 34 1 7.8917 -1.9478 2.7915 35 1 10.0773 -2.3153 3.9804 36 1 9.0345 -3.6713 4.4730 37 1 11.0359 -3.3636 5.9752 38 1 9.4835 -3.2106 6.8394 39 1 12.5301 -2.8606 6.4813 40 1 8.7132 -0.5286 7.3309 41 1 9.8761 0.6753 6.7154 42 1 9.4141 -0.0007 4.3991 43 1 7.8737 0.3799 5.2058 44 1 7.0638 -1.9654 1.1603 45 1 5.7911 -1.9597 -0.9421 46 1 3.5685 -1.7817 -1.9952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151203708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:52 Heat of formation + Delta-G solvation = -92.199755 kcal Electronic energy + Delta-G solvation = -29382.501296 eV Core-core repulsion = 25236.560729 eV Total energy + Delta-G solvation = -4145.940566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01459 -40.08408 -39.03423 -37.88791 -36.86252 -35.54693 -34.00402 -32.66087 -31.67856 -30.75760 -29.84747 -29.49969 -26.90641 -25.50821 -24.39092 -23.39986 -22.39239 -21.40123 -20.98835 -19.89938 -19.67627 -19.25609 -18.28645 -17.80592 -17.09819 -16.51799 -16.38080 -15.86944 -15.38705 -15.10131 -14.93900 -14.67851 -14.49902 -14.32540 -13.88533 -13.79080 -13.42128 -13.34473 -13.21671 -12.97233 -12.67911 -12.48991 -12.34962 -11.96273 -11.83308 -11.67791 -11.57823 -11.20334 -11.09223 -10.70802 -10.53503 -10.43484 -10.38288 -10.08495 -9.85963 -9.63115 -9.23941 -9.18121 -8.79514 -8.48446 -8.40827 -8.24055 -6.45956 -4.04948 0.27420 0.81153 1.66488 2.18269 2.63937 2.76928 3.36462 3.39873 3.41605 3.44950 3.58783 3.59546 4.08357 4.21914 4.36967 4.45165 4.50472 4.59784 4.82240 4.85275 5.14367 5.17425 5.21434 5.32063 5.46542 5.56877 5.58529 5.64883 5.76680 5.85256 5.98518 6.04665 6.09567 6.24397 6.36391 6.37220 6.59658 6.66811 6.73779 6.79733 6.86855 7.03577 7.11352 7.21440 7.21823 7.34603 7.54081 7.75128 8.03586 8.28311 8.39026 8.84441 9.57186 10.91585 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.002037 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.041675 B =13742.198963 C =14085.164646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.076 3.924 3 H 0.107 0.893 4 O -0.297 6.297 5 C 0.069 3.931 6 C -0.048 4.048 7 C -0.116 4.116 8 C 0.553 3.447 9 O -0.535 6.535 10 N -0.716 5.716 11 C 0.156 3.844 12 H 0.080 0.920 13 C -0.112 4.112 14 C 0.004 3.996 15 C -0.569 4.569 16 C 0.035 3.965 17 N -0.908 5.908 18 Si 1.063 2.937 19 H -0.286 1.286 20 H -0.288 1.288 21 H -0.283 1.283 22 C -0.006 4.006 23 C -0.114 4.114 24 C -0.075 4.075 25 C -0.129 4.129 26 C 0.111 3.889 27 N -0.658 5.658 28 C 0.494 3.506 29 O -0.505 6.505 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.040 0.960 38 H 0.009 0.991 39 H 0.271 0.729 40 H 0.015 0.985 41 H 0.030 0.970 42 H 0.051 0.949 43 H 0.037 0.963 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 1.767 -16.885 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 H 0.124 0.876 4 O -0.212 6.212 5 C 0.023 3.977 6 C -0.068 4.068 7 C -0.121 4.121 8 C 0.339 3.661 9 O -0.413 6.413 10 N -0.366 5.366 11 C 0.054 3.946 12 H 0.098 0.902 13 C -0.151 4.151 14 C -0.034 4.034 15 C -0.587 4.587 16 C -0.170 4.170 17 N -0.544 5.544 18 Si 0.892 3.108 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.044 4.044 23 C -0.153 4.153 24 C -0.094 4.094 25 C -0.150 4.150 26 C 0.014 3.986 27 N -0.305 5.305 28 C 0.281 3.719 29 O -0.379 6.379 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.228 0.772 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.084 0.916 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -18.223 2.979 -15.934 24.389 hybrid contribution -0.637 -1.331 -1.675 2.232 sum -18.859 1.648 -17.610 25.855 Atomic orbital electron populations 1.21727 0.88702 1.04533 1.04307 1.22675 0.98307 0.96397 0.80924 0.87589 1.86327 1.21173 1.74184 1.39490 1.18375 0.83861 1.03092 0.92362 1.20593 0.91880 0.97094 0.97223 1.19928 0.93925 1.04135 0.94077 1.18002 0.82226 0.77837 0.87986 1.90797 1.69584 1.48272 1.32637 1.46340 1.09635 1.68485 1.12161 1.21058 0.92164 0.97426 0.83997 0.90224 1.21874 0.95732 0.95568 1.01877 1.19393 0.95668 0.97320 0.91014 1.21031 0.95367 0.94352 1.48000 1.25756 0.91738 1.05271 0.94252 1.70805 1.34359 1.05061 1.44210 0.83627 0.75415 0.74663 0.77107 1.21250 1.21474 1.20875 1.19675 0.95998 0.96810 0.91951 1.21996 0.98224 0.94282 1.00790 1.21181 1.00199 0.97221 0.90838 1.20540 0.90902 1.03949 0.99575 1.18207 0.92592 1.02606 0.85173 1.43683 1.19993 1.54051 1.12731 1.21608 0.80423 0.78892 0.91006 1.90797 1.55080 1.58669 1.33333 0.90973 0.89865 0.88963 0.82812 0.77242 0.92686 0.94580 0.94123 0.97283 0.91592 0.96708 0.95165 0.92996 0.94395 0.84324 0.84209 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.14 37.15 0.34 -0.50 16 2 C 0.08 0.60 3.68 -27.86 -0.10 0.50 16 3 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 4 O -0.30 -2.93 10.09 -19.85 -0.20 -3.13 16 5 C 0.07 0.71 6.43 -39.14 -0.25 0.46 16 6 C -0.05 -0.55 9.53 -39.10 -0.37 -0.92 16 7 C -0.12 -1.35 5.88 -104.94 -0.62 -1.97 16 8 C 0.55 8.47 7.72 -12.44 -0.10 8.37 16 9 O -0.53 -10.27 16.00 5.29 0.08 -10.19 16 10 N -0.72 -10.60 5.02 -54.87 -0.28 -10.87 16 11 C 0.16 2.93 2.35 -67.97 -0.16 2.77 16 12 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 13 C -0.11 -2.17 5.40 -26.64 -0.14 -2.31 16 14 C 0.00 0.10 5.96 -27.49 -0.16 -0.07 16 15 C -0.57 -14.57 5.50 -98.92 -0.54 -15.11 16 16 C 0.03 0.94 5.46 -17.82 -0.10 0.84 16 17 N -0.91 -26.07 13.66 55.43 0.76 -25.32 16 18 Si 1.06 24.51 27.48 -169.99 -4.67 19.84 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.21 6.71 56.52 0.38 -5.83 16 22 C -0.01 -0.14 5.59 -27.25 -0.15 -0.29 16 23 C -0.11 -2.33 5.52 -26.40 -0.15 -2.48 16 24 C -0.07 -0.64 9.53 -39.18 -0.37 -1.01 16 25 C -0.13 -0.93 9.92 -39.53 -0.39 -1.32 16 26 C 0.11 0.95 6.55 -83.49 -0.55 0.40 16 27 N -0.66 -5.10 5.45 -9.65 -0.05 -5.16 16 28 C 0.49 4.53 7.64 -10.84 -0.08 4.45 16 29 O -0.51 -5.81 17.01 5.55 0.09 -5.71 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.52 7.86 -51.93 -0.41 0.11 16 33 H 0.15 1.84 7.64 -52.49 -0.40 1.44 16 34 H 0.39 4.53 6.61 -40.82 -0.27 4.26 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 1.00 5.80 -51.93 -0.30 0.70 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.27 7.68 6.36 -40.82 -0.26 7.42 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.03 0.69 5.01 -51.93 -0.26 0.43 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.14 0.90 6.38 -52.48 -0.33 0.57 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.42 2.37 8.88 -40.82 -0.36 2.01 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -32.40 370.88 -8.61 -41.01 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.04 Total: 2.12 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.90 Total: -8.19 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.43 Total: -41.35 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.02 Total: -19.03 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.67 Total: 19.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.40 -8.61 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151203708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.186 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds