Wall clock time and date at job start Wed Apr 1 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.45445 * 2 1 4 4 O 1.43013 * 109.43049 * 119.93771 * 2 1 3 5 5 C 1.36034 * 116.66380 * 166.39194 * 4 2 1 6 6 C 1.37976 * 120.54641 * 147.15137 * 5 4 2 7 7 C 1.39793 * 119.76854 * 180.14148 * 6 5 4 8 8 C 1.47603 * 120.03127 * 179.97438 * 7 6 5 9 9 O 1.21585 * 119.99816 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00367 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00415 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.35412 * 35.17062 * 11 10 8 13 13 C 1.52956 * 109.41777 * 154.99978 * 11 10 8 14 14 C 1.53221 * 109.40807 * 183.70282 * 13 11 10 15 15 C 1.51269 * 108.53837 * 305.37110 * 14 13 11 16 16 C 1.37877 * 120.85332 * 231.32482 * 15 14 13 17 17 N 1.31509 * 119.99875 * 5.66756 * 16 15 14 18 18 Si 1.86806 * 120.00104 * 185.66674 * 16 15 14 19 19 H 1.48500 * 109.46878 * 270.00091 * 18 16 15 20 20 H 1.48496 * 109.46929 * 150.00029 * 18 16 15 21 21 H 1.48498 * 109.46979 * 29.99904 * 18 16 15 22 22 C 1.51277 * 118.29783 * 51.59802 * 15 14 13 23 23 C 1.52965 * 109.40846 * 275.35077 * 11 10 8 24 24 C 1.39726 * 119.93685 * 0.26430 * 7 6 5 25 25 C 1.37804 * 120.05840 * 359.44714 * 24 7 6 26 26 C 1.38819 * 120.01925 * 0.52381 * 25 24 7 27 27 N 1.39759 * 120.55577 * 179.82024 * 26 25 24 28 28 C 1.35046 * 119.07461 * 195.57790 * 27 26 25 29 29 O 1.21290 * 120.11508 * 181.56066 * 28 27 26 30 30 H 1.08999 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47294 * 299.95449 * 1 2 3 32 32 H 1.08997 * 109.46994 * 59.95312 * 1 2 3 33 33 H 1.08000 * 120.11594 * 0.12098 * 6 5 4 34 34 H 0.97004 * 120.00204 * 359.97438 * 10 8 7 35 35 H 1.09003 * 109.48347 * 63.72088 * 13 11 10 36 36 H 1.09004 * 109.49539 * 303.69040 * 13 11 10 37 37 H 1.08999 * 109.62967 * 185.65809 * 14 13 11 38 38 H 1.09000 * 109.62796 * 65.08174 * 14 13 11 39 39 H 0.97000 * 120.00152 * 354.39508 * 17 16 15 40 40 H 1.08994 * 109.62791 * 68.11350 * 22 15 14 41 41 H 1.08999 * 109.62410 * 188.69078 * 22 15 14 42 42 H 1.09000 * 109.48295 * 296.27376 * 23 11 10 43 43 H 1.08998 * 109.48514 * 56.30367 * 23 11 10 44 44 H 1.08008 * 119.96575 * 179.71094 * 24 7 6 45 45 H 1.07995 * 119.99199 * 180.28477 * 25 24 7 46 46 H 0.97006 * 120.46268 * 15.55056 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 8 2.0057 -0.6731 1.1687 5 6 3.3230 -1.0121 1.1842 6 6 4.0313 -1.0196 2.3683 7 6 5.3852 -1.3677 2.3651 8 6 6.1485 -1.3771 3.6283 9 8 5.5999 -1.0816 4.6723 10 7 7.4538 -1.7124 3.6245 11 6 8.2114 -1.7223 4.8784 12 1 7.5633 -2.0546 5.6893 13 6 9.3963 -2.6808 4.7491 14 6 10.1345 -2.7615 6.0893 15 6 10.5104 -1.3600 6.5166 16 6 11.8047 -1.0550 6.8808 17 7 12.7534 -1.9568 6.7538 18 14 12.2108 0.6393 7.5548 19 1 12.5767 1.5429 6.4346 20 1 13.3514 0.5356 8.5000 21 1 11.0271 1.1860 8.2654 22 6 9.4284 -0.3029 6.5400 23 6 8.7171 -0.3100 5.1779 24 6 6.0166 -1.7009 1.1640 25 6 5.3031 -1.6975 -0.0150 26 6 3.9585 -1.3525 -0.0121 27 7 3.2251 -1.3417 -1.2018 28 6 2.0320 -0.7098 -1.2315 29 8 1.3669 -0.7128 -2.2458 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5131 0.8904 32 1 -0.3633 0.5145 -0.8895 33 1 3.5415 -0.7571 3.2944 34 1 7.8917 -1.9478 2.7915 35 1 10.0773 -2.3153 3.9804 36 1 9.0345 -3.6713 4.4730 37 1 11.0359 -3.3636 5.9752 38 1 9.4835 -3.2106 6.8394 39 1 12.5301 -2.8606 6.4813 40 1 8.7132 -0.5286 7.3309 41 1 9.8761 0.6753 6.7154 42 1 9.4141 -0.0007 4.3991 43 1 7.8737 0.3799 5.2058 44 1 7.0638 -1.9654 1.1603 45 1 5.7911 -1.9597 -0.9421 46 1 3.5685 -1.7817 -1.9952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151203708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:51 Heat of formation + Delta-G solvation = -114.338193 kcal Electronic energy + Delta-G solvation = -29383.461290 eV Core-core repulsion = 25236.560729 eV Total energy + Delta-G solvation = -4146.900561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.71784 -41.20139 -39.92505 -38.81336 -38.29322 -36.32941 -35.60649 -33.59174 -33.07760 -31.58180 -31.49327 -30.45294 -28.52895 -26.14528 -25.35925 -24.33714 -23.83286 -23.05172 -22.09411 -21.31413 -20.63608 -20.21607 -18.99138 -18.83346 -18.27307 -17.79951 -17.51360 -16.89582 -16.23523 -16.18262 -15.97815 -15.72939 -15.61371 -15.49397 -15.04370 -15.01947 -14.70251 -14.49186 -14.14234 -14.00104 -13.93105 -13.67445 -13.37552 -13.21974 -13.05360 -12.87822 -12.58789 -12.49580 -12.30805 -12.16077 -12.07718 -11.97041 -11.87346 -11.47834 -11.25002 -11.23055 -10.91157 -10.55021 -10.36177 -9.96713 -9.86228 -9.16188 -8.55630 -6.13596 -0.52098 0.11065 0.93568 1.53056 1.54260 1.60058 1.77381 1.78860 1.91659 2.28825 2.56172 2.67554 2.76082 3.17930 3.41846 3.61348 3.69903 3.83726 3.88359 3.99812 4.05328 4.14587 4.19321 4.43731 4.55283 4.65496 4.68669 4.71445 4.81433 4.82683 4.90716 4.92758 4.97095 5.08323 5.10073 5.15124 5.18357 5.21537 5.28233 5.28647 5.39849 5.50609 5.58955 5.60059 5.71413 6.06449 6.09782 6.25987 6.57754 6.58739 6.79175 7.22843 7.54753 8.82182 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.002037 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.041675 B =13742.198963 C =14085.164646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.124 0.876 4 O -0.309 6.309 5 C 0.060 3.940 6 C -0.060 4.060 7 C -0.132 4.132 8 C 0.554 3.446 9 O -0.582 6.582 10 N -0.704 5.704 11 C 0.168 3.832 12 H 0.054 0.946 13 C -0.098 4.098 14 C -0.004 4.004 15 C -0.573 4.573 16 C -0.014 4.014 17 N -0.942 5.942 18 Si 1.095 2.905 19 H -0.270 1.270 20 H -0.294 1.294 21 H -0.268 1.268 22 C -0.012 4.012 23 C -0.107 4.107 24 C -0.062 4.062 25 C -0.113 4.113 26 C 0.117 3.883 27 N -0.649 5.649 28 C 0.493 3.507 29 O -0.531 6.531 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.413 0.587 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.024 0.976 38 H -0.002 1.002 39 H 0.261 0.739 40 H 0.004 0.996 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.165 0.835 45 H 0.180 0.820 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.980 2.304 -19.691 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 H 0.142 0.858 4 O -0.225 6.225 5 C 0.013 3.987 6 C -0.080 4.080 7 C -0.136 4.136 8 C 0.343 3.657 9 O -0.463 6.463 10 N -0.355 5.355 11 C 0.063 3.937 12 H 0.073 0.927 13 C -0.137 4.137 14 C -0.042 4.042 15 C -0.592 4.592 16 C -0.213 4.213 17 N -0.580 5.580 18 Si 0.919 3.081 19 H -0.195 1.195 20 H -0.220 1.220 21 H -0.194 1.194 22 C -0.050 4.050 23 C -0.146 4.146 24 C -0.082 4.082 25 C -0.133 4.133 26 C 0.020 3.980 27 N -0.296 5.296 28 C 0.281 3.719 29 O -0.406 6.406 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.154 0.846 34 H 0.251 0.749 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.183 0.817 45 H 0.197 0.803 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -18.743 3.500 -18.791 26.770 hybrid contribution -0.580 -1.550 -0.826 1.850 sum -19.322 1.950 -19.618 27.604 Atomic orbital electron populations 1.21754 0.87673 1.04309 1.05267 1.22918 0.99168 0.96893 0.79824 0.85838 1.86317 1.21148 1.74538 1.40477 1.18380 0.84085 1.03618 0.92595 1.20460 0.92193 0.98128 0.97230 1.19599 0.93715 1.06895 0.93398 1.18518 0.82056 0.76412 0.88737 1.90775 1.70464 1.50339 1.34745 1.45985 1.09472 1.68484 1.11576 1.20619 0.91724 0.96118 0.85212 0.92745 1.21649 0.95511 0.97284 0.99231 1.19423 0.95332 0.96186 0.93308 1.21539 0.95732 0.95676 1.46284 1.26868 0.92385 1.07542 0.94519 1.70902 1.35144 1.05093 1.46906 0.83213 0.75574 0.72126 0.77194 1.19531 1.22042 1.19352 1.19715 0.95429 0.96318 0.93542 1.21864 0.98093 0.95507 0.99088 1.21434 1.01332 0.95609 0.89797 1.20912 0.89961 1.01854 1.00567 1.18322 0.93188 1.01751 0.84718 1.43617 1.19515 1.53546 1.12906 1.21819 0.80499 0.78680 0.90934 1.90789 1.55819 1.59740 1.34289 0.91791 0.88595 0.88266 0.84609 0.74920 0.92083 0.91984 0.95771 0.98338 0.92664 0.97748 0.94721 0.92247 0.94172 0.81728 0.80290 0.72971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.14 71.98 0.66 -0.83 16 2 C 0.07 1.01 3.68 29.86 0.11 1.12 16 3 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 4 O -0.31 -5.81 10.09 -93.94 -0.95 -6.76 16 5 C 0.06 1.13 6.43 22.55 0.15 1.27 16 6 C -0.06 -1.34 9.53 22.58 0.22 -1.12 16 7 C -0.13 -2.84 5.88 -20.07 -0.12 -2.95 16 8 C 0.55 16.40 7.72 86.72 0.67 17.07 16 9 O -0.58 -22.66 16.00 -3.98 -0.06 -22.72 16 10 N -0.70 -19.32 5.02 -445.78 -2.24 -21.56 16 11 C 0.17 6.10 2.35 44.97 0.11 6.20 16 12 H 0.05 2.29 7.58 -2.39 -0.02 2.27 16 13 C -0.10 -3.66 5.40 30.65 0.17 -3.49 16 14 C 0.00 -0.20 5.96 30.10 0.18 -0.03 16 15 C -0.57 -29.46 5.50 -16.17 -0.09 -29.55 16 16 C -0.01 -0.79 5.46 84.66 0.46 -0.32 16 17 N -0.94 -55.04 13.66 21.45 0.29 -54.75 16 18 Si 1.09 49.06 27.48 68.60 1.88 50.95 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.27 -11.26 6.71 99.48 0.67 -10.59 16 22 C -0.01 -0.54 5.59 30.26 0.17 -0.37 16 23 C -0.11 -4.23 5.52 30.81 0.17 -4.06 16 24 C -0.06 -0.82 9.53 22.53 0.21 -0.61 16 25 C -0.11 -1.11 9.92 22.31 0.22 -0.89 16 26 C 0.12 1.65 6.55 38.36 0.25 1.90 16 27 N -0.65 -8.18 5.45 -302.67 -1.65 -9.83 16 28 C 0.49 8.11 7.64 87.63 0.67 8.78 16 29 O -0.53 -11.39 17.01 -3.06 -0.05 -11.44 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.10 0.98 7.86 -2.39 -0.02 0.96 16 33 H 0.14 3.43 7.64 -2.91 -0.02 3.40 16 34 H 0.41 8.02 6.61 -92.71 -0.61 7.41 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.02 1.21 5.80 -2.39 -0.01 1.20 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.26 15.24 6.36 -92.71 -0.59 14.65 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.03 1.54 5.01 -2.39 -0.01 1.53 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.17 1.29 6.38 -2.91 -0.02 1.27 16 45 H 0.18 0.43 8.06 -2.91 -0.02 0.40 16 46 H 0.43 3.41 8.88 -92.70 -0.82 2.58 16 Total: -1.00 -72.43 370.88 1.18 -71.26 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -0.25 Total: 12.75 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.20 Total: -7.89 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.60 Total: -86.14 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.06 Total: -40.93 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.88 Total: 50.95 kcal Total: -72.43 1.18 -71.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151203708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.083 kcal (2) G-P(sol) polarization free energy of solvation -72.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds