Wall clock time and date at job start Wed Apr 1 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33017 * 1 3 3 C 1.50699 * 119.99988 * 2 1 4 4 O 1.42901 * 109.47421 * 359.97438 * 3 2 1 5 5 C 1.47063 * 120.00121 * 179.97438 * 2 1 3 6 6 O 1.21645 * 119.99617 * 0.02562 * 5 2 1 7 7 N 1.34767 * 120.00378 * 180.02562 * 5 2 1 8 8 C 1.39977 * 120.00574 * 185.28119 * 7 5 2 9 9 C 1.38914 * 120.00741 * 213.33789 * 8 7 5 10 10 C 1.38026 * 120.01663 * 180.02562 * 9 8 7 11 11 C 1.38888 * 119.98895 * 359.97438 * 10 9 8 12 12 C 1.38873 * 119.99058 * 0.02562 * 11 10 9 13 13 C 1.38025 * 120.03533 * 0.02562 * 12 11 10 14 14 C 1.50666 * 119.84033 * 180.02562 * 12 11 10 15 15 C 1.52903 * 109.52620 * 326.04800 * 14 12 11 16 16 C 1.50469 * 109.92329 * 48.64620 * 15 14 12 17 17 O 1.21293 * 119.62275 * 144.78543 * 16 15 14 18 18 N 1.34561 * 120.75498 * 324.76675 * 16 15 14 19 19 C 1.46502 * 119.77762 * 180.78030 * 18 16 15 20 20 C 1.53000 * 109.47551 * 270.02617 * 19 18 16 21 21 C 1.50698 * 109.47271 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99640 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99916 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99907 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99849 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47065 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47122 * 120.00421 * 25 23 21 28 28 H 1.48499 * 109.47010 * 240.00185 * 25 23 21 29 29 H 1.08001 * 120.00258 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00409 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47649 * 119.99664 * 3 2 1 32 32 H 1.09000 * 109.46798 * 240.00100 * 3 2 1 33 33 H 0.96698 * 114.00592 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99866 * 5.27686 * 7 5 2 35 35 H 1.07997 * 119.99107 * 0.04255 * 9 8 7 36 36 H 1.08000 * 120.00613 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.01295 * 180.02562 * 13 12 11 38 38 H 1.09008 * 109.45392 * 86.05616 * 14 12 11 39 39 H 1.08993 * 109.46395 * 206.03359 * 14 12 11 40 40 H 1.08996 * 109.39694 * 168.76929 * 15 14 12 41 41 H 1.08994 * 109.39892 * 288.50679 * 15 14 12 42 42 H 1.09005 * 109.46835 * 30.02412 * 19 18 16 43 43 H 1.08998 * 109.47178 * 150.01791 * 19 18 16 44 44 H 1.09002 * 109.46380 * 299.99720 * 20 19 18 45 45 H 1.08994 * 109.47079 * 59.99395 * 20 19 18 46 46 H 0.96999 * 120.00029 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0837 1.3051 0.0000 4 8 1.1551 2.3913 -0.0006 5 6 2.0655 -1.2736 0.0006 6 8 1.4572 -2.3270 0.0006 7 7 3.4132 -1.2737 0.0011 8 6 4.1132 -2.4807 -0.1099 9 6 5.3306 -2.6401 0.5398 10 6 6.0213 -3.8301 0.4300 11 6 5.4986 -4.8686 -0.3298 12 6 4.2815 -4.7092 -0.9793 13 6 3.5911 -3.5189 -0.8706 14 6 3.7173 -5.8381 -1.8022 15 6 4.8603 -6.6115 -2.4606 16 6 5.9150 -6.9370 -1.4380 17 8 6.5188 -7.9863 -1.5126 18 7 6.1963 -6.0771 -0.4419 19 6 7.2393 -6.4082 0.5322 20 6 6.6185 -7.1688 1.7056 21 6 7.6915 -7.5099 2.7073 22 1 8.7139 -7.2133 2.5253 23 6 7.3677 -8.1996 3.8564 24 7 6.1227 -8.5602 4.0781 25 14 8.6977 -8.6216 5.0984 26 1 10.0051 -8.1069 4.6178 27 1 8.3706 -7.9972 6.4054 28 1 8.7746 -10.0958 5.2595 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 2.7103 1.3629 0.8899 32 1 2.7103 1.3628 -0.8900 33 1 1.5709 3.2643 -0.0010 34 1 3.8982 -0.4371 0.0784 35 1 5.7367 -1.8328 1.1311 36 1 6.9676 -3.9540 0.9355 37 1 2.6444 -3.3955 -1.3755 38 1 3.1492 -6.5088 -1.1574 39 1 3.0615 -5.4333 -2.5729 40 1 4.4728 -7.5364 -2.8876 41 1 5.2991 -6.0045 -3.2525 42 1 7.9969 -7.0305 0.0559 43 1 7.7001 -5.4903 0.8972 44 1 5.8609 -6.5465 2.1819 45 1 6.1577 -8.0867 1.3406 46 1 5.8949 -9.0457 4.8864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154408423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:39 Heat of formation + Delta-G solvation = -73.132872 kcal Electronic energy + Delta-G solvation = -29482.175861 eV Core-core repulsion = 25337.062097 eV Total energy + Delta-G solvation = -4145.113764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08150 -40.29874 -38.35969 -37.56994 -35.91160 -34.94236 -33.85625 -33.34361 -32.90374 -30.29141 -29.63365 -28.54517 -26.73347 -25.39925 -24.36847 -24.02380 -22.42500 -21.82591 -20.69108 -19.50943 -18.90956 -18.20481 -17.57010 -17.02407 -16.77808 -16.60160 -16.00656 -15.68651 -15.44529 -14.94260 -14.83774 -14.64006 -14.50908 -14.39566 -13.97828 -13.70272 -13.59185 -13.15839 -13.01104 -12.70742 -12.62451 -12.46980 -12.19714 -11.85717 -11.79698 -11.64373 -11.34213 -11.07661 -10.99815 -10.88676 -10.85611 -10.55391 -10.23783 -9.94210 -9.88364 -9.71527 -9.54024 -9.12928 -9.00495 -8.70739 -8.36819 -7.29336 -6.01007 -4.04965 0.90838 1.36344 1.47722 2.79384 2.82141 3.02982 3.27566 3.31222 3.38849 3.42644 3.52567 3.92358 4.37192 4.45629 4.51838 4.63828 4.70878 4.76975 4.84483 4.86195 5.05165 5.15714 5.30355 5.34213 5.35068 5.43510 5.47951 5.69860 5.78782 5.88223 5.91014 5.91507 6.00899 6.04930 6.15529 6.21967 6.39218 6.41025 6.51271 6.76276 6.85159 7.01662 7.03919 7.17203 7.58706 7.67348 7.85992 7.88882 7.97604 8.31093 8.43757 9.01329 9.58914 11.10424 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.002640 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.162084 B =10603.252368 C =12020.713806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.203 4.203 3 C 0.114 3.886 4 O -0.569 6.569 5 C 0.556 3.444 6 O -0.516 6.516 7 N -0.666 5.666 8 C 0.106 3.894 9 C -0.110 4.110 10 C -0.130 4.130 11 C 0.171 3.829 12 C -0.113 4.113 13 C -0.082 4.082 14 C -0.074 4.074 15 C -0.136 4.136 16 C 0.512 3.488 17 O -0.521 6.521 18 N -0.546 5.546 19 C 0.105 3.895 20 C 0.015 3.985 21 C -0.521 4.521 22 H 0.058 0.942 23 C 0.059 3.941 24 N -0.891 5.891 25 Si 0.895 3.105 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.386 0.614 34 H 0.407 0.593 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.019 0.981 45 H 0.022 0.978 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 23.552 -12.611 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.206 4.206 3 C 0.036 3.964 4 O -0.375 6.375 5 C 0.345 3.655 6 O -0.392 6.392 7 N -0.310 5.310 8 C 0.012 3.988 9 C -0.131 4.131 10 C -0.151 4.151 11 C 0.075 3.925 12 C -0.116 4.116 13 C -0.103 4.103 14 C -0.111 4.111 15 C -0.176 4.176 16 C 0.301 3.699 17 O -0.396 6.396 18 N -0.268 5.268 19 C -0.014 4.014 20 C -0.023 4.023 21 C -0.560 4.560 22 H 0.076 0.924 23 C -0.143 4.143 24 N -0.529 5.529 25 Si 0.723 3.277 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.235 0.765 34 H 0.242 0.758 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.883 21.568 -12.560 26.492 hybrid contribution 1.321 0.665 1.059 1.819 sum -7.562 22.234 -11.501 26.150 Atomic orbital electron populations 1.24704 0.94685 1.03797 0.87111 1.21356 0.96254 0.92468 1.10554 1.20832 0.90457 0.84638 1.00445 1.86407 1.36209 1.17115 1.97766 1.18308 0.81687 0.89283 0.76252 1.90857 1.67891 1.32265 1.48214 1.43326 1.06215 1.08490 1.73007 1.17489 0.93826 0.87379 1.00104 1.20631 0.94945 0.98054 0.99471 1.20748 1.01432 0.91568 1.01334 1.17761 0.91279 0.86205 0.97284 1.19356 0.93622 0.96341 1.02278 1.20659 0.99864 0.91675 0.98064 1.20382 0.97049 0.95018 0.98632 1.21683 0.95233 1.03072 0.97619 1.20603 0.84022 0.83366 0.81886 1.90740 1.51404 1.23278 1.74214 1.45904 1.36648 1.16525 1.27743 1.22177 0.89075 1.00388 0.89788 1.19368 0.96595 0.95491 0.90867 1.21071 0.94329 1.36487 1.04089 0.92393 1.25005 0.95424 0.95688 0.98165 1.69988 1.17298 1.39045 1.26618 0.86493 0.81947 0.78193 0.81110 1.19654 1.21000 1.20941 0.85502 0.86493 0.92069 0.92054 0.76549 0.75761 0.85402 0.84274 0.84603 0.89697 0.89502 0.87699 0.88475 0.90155 0.90912 0.96268 0.95964 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 13.66 28.92 0.40 -0.13 16 2 C -0.20 -1.70 6.00 -102.86 -0.62 -2.31 16 3 C 0.11 0.57 6.32 36.01 0.23 0.80 16 4 O -0.57 -2.89 12.08 -35.23 -0.43 -3.31 16 5 C 0.56 6.21 7.48 -12.69 -0.09 6.11 16 6 O -0.52 -7.79 13.91 5.24 0.07 -7.71 16 7 N -0.67 -6.36 5.30 -10.90 -0.06 -6.42 16 8 C 0.11 1.32 6.28 -83.65 -0.53 0.80 16 9 C -0.11 -1.36 9.95 -39.41 -0.39 -1.75 16 10 C -0.13 -1.94 9.33 -39.42 -0.37 -2.31 16 11 C 0.17 2.86 6.33 -83.65 -0.53 2.33 16 12 C -0.11 -1.67 5.65 -104.48 -0.59 -2.26 16 13 C -0.08 -1.13 8.29 -39.42 -0.33 -1.46 16 14 C -0.07 -0.95 6.00 -27.95 -0.17 -1.12 16 15 C -0.14 -1.83 6.07 -28.04 -0.17 -2.00 16 16 C 0.51 9.71 7.46 -11.19 -0.08 9.62 16 17 O -0.52 -11.90 16.61 5.55 0.09 -11.80 16 18 N -0.55 -10.48 2.69 -113.57 -0.31 -10.79 16 19 C 0.11 2.28 5.08 -4.04 -0.02 2.26 16 20 C 0.01 0.39 5.30 -27.88 -0.15 0.24 16 21 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 22 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 25 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.13 0.88 6.89 -52.49 -0.36 0.51 16 30 H 0.12 1.02 7.49 -52.49 -0.39 0.63 16 31 H 0.06 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.39 0.19 9.12 45.56 0.42 0.60 16 34 H 0.41 2.37 7.65 -40.82 -0.31 2.05 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 2.05 6.01 -52.49 -0.32 1.73 16 37 H 0.14 1.85 6.41 -52.49 -0.34 1.51 16 38 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 40 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.81 7.40 -51.93 -0.38 1.43 16 43 H 0.07 1.40 5.81 -51.93 -0.30 1.10 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -38.24 384.36 -8.27 -46.50 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.33 Total: 2.38 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.82 Total: -4.80 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.37 Total: -43.97 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.26 Total: -22.83 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.24 -8.27 -46.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154408423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.631 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds