Wall clock time and date at job start Wed Apr 1 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33017 * 1 3 3 C 1.50699 * 119.99988 * 2 1 4 4 O 1.42901 * 109.47421 * 359.97438 * 3 2 1 5 5 C 1.47063 * 120.00121 * 179.97438 * 2 1 3 6 6 O 1.21645 * 119.99617 * 0.02562 * 5 2 1 7 7 N 1.34767 * 120.00378 * 180.02562 * 5 2 1 8 8 C 1.39977 * 120.00574 * 185.28119 * 7 5 2 9 9 C 1.38914 * 120.00741 * 213.33789 * 8 7 5 10 10 C 1.38026 * 120.01663 * 180.02562 * 9 8 7 11 11 C 1.38888 * 119.98895 * 359.97438 * 10 9 8 12 12 C 1.38873 * 119.99058 * 0.02562 * 11 10 9 13 13 C 1.38025 * 120.03533 * 0.02562 * 12 11 10 14 14 C 1.50666 * 119.84033 * 180.02562 * 12 11 10 15 15 C 1.52903 * 109.52620 * 326.04800 * 14 12 11 16 16 C 1.50469 * 109.92329 * 48.64620 * 15 14 12 17 17 O 1.21293 * 119.62275 * 144.78543 * 16 15 14 18 18 N 1.34561 * 120.75498 * 324.76675 * 16 15 14 19 19 C 1.46502 * 119.77762 * 180.78030 * 18 16 15 20 20 C 1.53000 * 109.47551 * 270.02617 * 19 18 16 21 21 C 1.50698 * 109.47271 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99640 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99916 * 179.97438 * 21 20 19 24 24 N 1.31509 * 119.99907 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99849 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47065 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47122 * 120.00421 * 25 23 21 28 28 H 1.48499 * 109.47010 * 240.00185 * 25 23 21 29 29 H 1.08001 * 120.00258 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00409 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47649 * 119.99664 * 3 2 1 32 32 H 1.09000 * 109.46798 * 240.00100 * 3 2 1 33 33 H 0.96698 * 114.00592 * 180.02562 * 4 3 2 34 34 H 0.97003 * 119.99866 * 5.27686 * 7 5 2 35 35 H 1.07997 * 119.99107 * 0.04255 * 9 8 7 36 36 H 1.08000 * 120.00613 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.01295 * 180.02562 * 13 12 11 38 38 H 1.09008 * 109.45392 * 86.05616 * 14 12 11 39 39 H 1.08993 * 109.46395 * 206.03359 * 14 12 11 40 40 H 1.08996 * 109.39694 * 168.76929 * 15 14 12 41 41 H 1.08994 * 109.39892 * 288.50679 * 15 14 12 42 42 H 1.09005 * 109.46835 * 30.02412 * 19 18 16 43 43 H 1.08998 * 109.47178 * 150.01791 * 19 18 16 44 44 H 1.09002 * 109.46380 * 299.99720 * 20 19 18 45 45 H 1.08994 * 109.47079 * 59.99395 * 20 19 18 46 46 H 0.96999 * 120.00029 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3302 0.0000 0.0000 3 6 2.0837 1.3051 0.0000 4 8 1.1551 2.3913 -0.0006 5 6 2.0655 -1.2736 0.0006 6 8 1.4572 -2.3270 0.0006 7 7 3.4132 -1.2737 0.0011 8 6 4.1132 -2.4807 -0.1099 9 6 5.3306 -2.6401 0.5398 10 6 6.0213 -3.8301 0.4300 11 6 5.4986 -4.8686 -0.3298 12 6 4.2815 -4.7092 -0.9793 13 6 3.5911 -3.5189 -0.8706 14 6 3.7173 -5.8381 -1.8022 15 6 4.8603 -6.6115 -2.4606 16 6 5.9150 -6.9370 -1.4380 17 8 6.5188 -7.9863 -1.5126 18 7 6.1963 -6.0771 -0.4419 19 6 7.2393 -6.4082 0.5322 20 6 6.6185 -7.1688 1.7056 21 6 7.6915 -7.5099 2.7073 22 1 8.7139 -7.2133 2.5253 23 6 7.3677 -8.1996 3.8564 24 7 6.1227 -8.5602 4.0781 25 14 8.6977 -8.6216 5.0984 26 1 10.0051 -8.1069 4.6178 27 1 8.3706 -7.9972 6.4054 28 1 8.7746 -10.0958 5.2595 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 2.7103 1.3629 0.8899 32 1 2.7103 1.3628 -0.8900 33 1 1.5709 3.2643 -0.0010 34 1 3.8982 -0.4371 0.0784 35 1 5.7367 -1.8328 1.1311 36 1 6.9676 -3.9540 0.9355 37 1 2.6444 -3.3955 -1.3755 38 1 3.1492 -6.5088 -1.1574 39 1 3.0615 -5.4333 -2.5729 40 1 4.4728 -7.5364 -2.8876 41 1 5.2991 -6.0045 -3.2525 42 1 7.9969 -7.0305 0.0559 43 1 7.7001 -5.4903 0.8972 44 1 5.8609 -6.5465 2.1819 45 1 6.1577 -8.0867 1.3406 46 1 5.8949 -9.0457 4.8864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154408423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:38 Heat of formation + Delta-G solvation = -101.278815 kcal Electronic energy + Delta-G solvation = -29483.396361 eV Core-core repulsion = 25337.062097 eV Total energy + Delta-G solvation = -4146.334264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27313 -41.37387 -39.54407 -38.03600 -37.24228 -36.34009 -34.95779 -34.85125 -34.01288 -31.97662 -30.98471 -29.70800 -27.30811 -27.17483 -25.51661 -25.03731 -24.09678 -22.89599 -22.24597 -20.45886 -20.01773 -18.95238 -18.66713 -18.54112 -17.93536 -17.76405 -17.19068 -16.92758 -16.50138 -16.45153 -15.85627 -15.68422 -15.45382 -15.32745 -15.15294 -14.96885 -14.85979 -14.55646 -14.29115 -14.25060 -14.18282 -13.53631 -13.34610 -13.21030 -12.94512 -12.88451 -12.66318 -12.64521 -12.33623 -12.16793 -12.11122 -11.82140 -11.59726 -11.47251 -11.45827 -11.15212 -10.91109 -10.64168 -10.36666 -10.22306 -9.79574 -8.55741 -8.25230 -6.39606 -0.02141 0.33481 0.47355 1.37156 1.39292 1.49306 1.53132 1.83659 2.00951 2.13024 2.38389 2.79575 3.07738 3.13156 3.38860 3.63071 3.73964 3.83347 3.96844 4.08168 4.12592 4.19484 4.29391 4.30914 4.36698 4.42377 4.57193 4.57454 4.72608 4.76267 4.80465 4.81359 4.87764 4.91492 5.06625 5.11513 5.24629 5.30042 5.33608 5.38219 5.41902 5.44991 5.59198 5.75571 5.91365 6.09625 6.38128 6.38903 6.75411 6.93818 6.96172 7.06178 7.30466 8.86964 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.002640 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.162084 B =10603.252368 C =12020.713806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.207 4.207 3 C 0.116 3.884 4 O -0.586 6.586 5 C 0.554 3.446 6 O -0.562 6.562 7 N -0.650 5.650 8 C 0.114 3.886 9 C -0.102 4.102 10 C -0.139 4.139 11 C 0.133 3.867 12 C -0.115 4.115 13 C -0.090 4.090 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.498 3.502 17 O -0.575 6.575 18 N -0.552 5.552 19 C 0.121 3.879 20 C 0.029 3.971 21 C -0.541 4.541 22 H 0.070 0.930 23 C -0.002 4.002 24 N -0.935 5.935 25 Si 0.974 3.026 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.282 1.282 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.428 0.572 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.066 0.934 43 H 0.099 0.901 44 H -0.007 1.007 45 H -0.027 1.027 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 26.950 -12.738 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.210 4.210 3 C 0.039 3.961 4 O -0.396 6.396 5 C 0.345 3.655 6 O -0.441 6.441 7 N -0.296 5.296 8 C 0.020 3.980 9 C -0.122 4.122 10 C -0.160 4.160 11 C 0.039 3.961 12 C -0.118 4.118 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.162 4.162 16 C 0.290 3.710 17 O -0.455 6.455 18 N -0.273 5.273 19 C 0.000 4.000 20 C -0.008 4.008 21 C -0.579 4.579 22 H 0.089 0.911 23 C -0.200 4.200 24 N -0.575 5.575 25 Si 0.798 3.202 26 H -0.179 1.179 27 H -0.199 1.199 28 H -0.207 1.207 29 H 0.159 0.841 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.258 0.742 34 H 0.268 0.732 35 H 0.183 0.817 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.011 0.989 45 H -0.009 1.009 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.299 25.082 -12.700 29.313 hybrid contribution 1.015 -0.264 1.106 1.524 sum -7.284 24.818 -11.594 28.345 Atomic orbital electron populations 1.24782 0.94926 1.03834 0.86956 1.21460 0.96251 0.92823 1.10493 1.20871 0.90035 0.82954 1.02246 1.86346 1.37057 1.18319 1.97854 1.18794 0.81918 0.89725 0.75113 1.90842 1.68816 1.34134 1.50305 1.43221 1.05845 1.08477 1.72028 1.17639 0.93696 0.88020 0.98688 1.20917 0.94405 0.97942 0.98968 1.20917 1.01772 0.92258 1.01054 1.18069 0.92534 0.85740 0.99787 1.19557 0.92966 0.97232 1.02038 1.20773 0.99847 0.91781 0.98600 1.20458 0.97038 0.94225 0.99175 1.21720 0.93662 1.04403 0.96461 1.21703 0.84374 0.82465 0.82438 1.90699 1.53659 1.25428 1.75693 1.45818 1.36485 1.17799 1.27222 1.21724 0.89235 1.00538 0.88541 1.19121 0.95763 0.93411 0.92550 1.21525 0.95145 1.36621 1.04629 0.91135 1.26081 0.98020 0.95298 1.00590 1.70145 1.19887 1.39891 1.27532 0.85268 0.79053 0.77818 0.78110 1.17877 1.19923 1.20746 0.84099 0.87873 0.90246 0.90019 0.74192 0.73228 0.81742 0.84452 0.84325 0.91317 0.85805 0.86300 0.85360 0.91538 0.88326 0.98867 1.00882 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 13.66 66.66 0.91 -0.09 16 2 C -0.21 -3.00 6.00 -18.71 -0.11 -3.11 16 3 C 0.12 0.75 6.32 71.24 0.45 1.20 16 4 O -0.59 -4.04 12.08 -148.98 -1.80 -5.84 16 5 C 0.55 11.35 7.48 86.56 0.65 12.00 16 6 O -0.56 -16.64 13.91 -4.17 -0.06 -16.70 16 7 N -0.65 -10.52 5.30 -306.65 -1.62 -12.15 16 8 C 0.11 2.60 6.28 38.16 0.24 2.84 16 9 C -0.10 -2.27 9.95 22.38 0.22 -2.04 16 10 C -0.14 -4.06 9.33 22.38 0.21 -3.86 16 11 C 0.13 4.49 6.33 38.14 0.24 4.73 16 12 C -0.11 -3.36 5.65 -19.77 -0.11 -3.47 16 13 C -0.09 -2.36 8.29 22.38 0.19 -2.17 16 14 C -0.07 -1.81 6.00 29.81 0.18 -1.63 16 15 C -0.12 -3.25 6.07 29.74 0.18 -3.07 16 16 C 0.50 19.70 7.46 87.62 0.65 20.36 16 17 O -0.58 -27.88 16.61 -3.07 -0.05 -27.93 16 18 N -0.55 -22.02 2.69 -631.74 -1.70 -23.72 16 19 C 0.12 5.46 5.08 86.38 0.44 5.90 16 20 C 0.03 1.68 5.30 29.85 0.16 1.84 16 21 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 22 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 23 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 24 N -0.93 -59.65 13.29 21.45 0.28 -59.36 16 25 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 26 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 29 H 0.14 1.69 6.89 -2.91 -0.02 1.67 16 30 H 0.10 1.81 7.49 -2.91 -0.02 1.78 16 31 H 0.08 0.24 8.07 -2.39 -0.02 0.22 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.41 -1.00 9.12 -74.06 -0.68 -1.68 16 34 H 0.43 3.24 7.65 -92.71 -0.71 2.53 16 35 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.14 3.96 6.01 -2.91 -0.02 3.94 16 37 H 0.14 3.61 6.41 -2.91 -0.02 3.59 16 38 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.12 2.19 8.06 -2.39 -0.02 2.17 16 40 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 3.16 7.40 -2.38 -0.02 3.15 16 43 H 0.10 3.87 5.81 -2.39 -0.01 3.86 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 46 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -88.62 384.36 1.92 -86.70 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -0.35 Total: 13.45 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.19 Total: -1.84 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -3.04 Total: -95.23 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -1.91 Total: -50.47 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -88.62 1.92 -86.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154408423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.577 kcal (2) G-P(sol) polarization free energy of solvation -88.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds