Wall clock time and date at job start Wed Apr 1 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47120 * 2 1 4 4 C 1.52999 * 109.47223 * 120.00162 * 2 1 3 5 5 N 1.46495 * 109.47452 * 295.00233 * 4 2 1 6 6 C 1.34778 * 120.00367 * 180.02562 * 5 4 2 7 7 O 1.21361 * 119.99633 * 359.97438 * 6 5 4 8 8 C 1.49338 * 120.00273 * 179.97438 * 6 5 4 9 9 O 1.21389 * 119.99925 * 0.02562 * 8 6 5 10 10 N 1.34770 * 120.00038 * 179.97438 * 8 6 5 11 11 C 1.39936 * 119.99877 * 179.97438 * 10 8 6 12 12 C 1.40453 * 125.98062 * 359.97438 * 11 10 8 13 13 C 1.35215 * 107.86384 * 179.73491 * 12 11 10 14 14 N 1.34979 * 107.87970 * 0.42460 * 13 12 11 15 15 C 1.46500 * 125.97555 * 179.83561 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71172 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31273 * 125.97577 * 179.97438 * 11 10 8 25 25 C 1.52996 * 109.46808 * 240.00286 * 2 1 3 26 26 C 1.53004 * 109.47360 * 64.99908 * 25 2 1 27 27 F 1.39897 * 109.47413 * 174.99660 * 26 25 2 28 28 F 1.39896 * 109.47277 * 295.00072 * 26 25 2 29 29 H 1.09001 * 109.46865 * 299.99653 * 1 2 3 30 30 H 1.08998 * 109.47389 * 59.99751 * 1 2 3 31 31 H 1.09001 * 109.47643 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47185 * 174.99733 * 4 2 1 33 33 H 1.09002 * 109.46708 * 55.00177 * 4 2 1 34 34 H 0.96999 * 119.99985 * 359.97438 * 5 4 2 35 35 H 0.96998 * 120.00451 * 0.02562 * 10 8 6 36 36 H 1.08000 * 126.07021 * 359.97438 * 12 11 10 37 37 H 1.08004 * 126.05929 * 180.25923 * 13 12 11 38 38 H 1.09004 * 109.47078 * 4.71934 * 15 14 13 39 39 H 1.08993 * 109.47364 * 244.71705 * 15 14 13 40 40 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 41 41 H 1.08997 * 109.46954 * 184.99819 * 25 2 1 42 42 H 1.08997 * 109.47664 * 304.99911 * 25 2 1 43 43 H 1.09000 * 109.46532 * 55.00045 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0352 2.4424 6 6 1.9965 -0.4133 3.6659 7 8 2.6270 -1.4441 3.7792 8 6 1.6019 0.3582 4.8822 9 8 0.9709 1.3890 4.7689 10 7 1.9455 -0.0906 6.1057 11 6 1.5762 0.6326 7.2453 12 6 0.8511 1.8354 7.2603 13 6 0.6945 2.2093 8.5503 14 7 1.3035 1.2875 9.3258 15 6 1.3778 1.3072 10.7887 16 6 0.8292 0.0151 11.3371 17 1 0.4622 -0.7448 10.6632 18 6 0.7956 -0.1968 12.6990 19 7 1.2474 0.7265 13.5195 20 14 0.1162 -1.7986 13.3787 21 1 0.1970 -1.7811 14.8614 22 1 -1.3010 -1.9516 12.9619 23 1 0.9123 -2.9366 12.8530 24 7 1.8469 0.3055 8.4875 25 6 2.0399 -0.7212 -1.2493 26 6 1.6351 0.0690 -2.4954 27 9 2.1974 -0.5275 -3.6290 28 9 0.2411 0.0723 -2.6130 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7995 1.2055 33 1 1.6054 -1.7198 1.2950 34 1 1.1489 0.8592 2.3518 35 1 2.4494 -0.9144 6.1963 36 1 0.4807 2.3654 6.3953 37 1 0.1766 3.0908 8.8983 38 1 0.7910 2.1424 11.1712 39 1 2.4167 1.4212 11.0983 40 1 1.6005 1.5582 13.1666 41 1 3.1262 -0.7994 -1.2057 42 1 1.6053 -1.7197 -1.2953 43 1 1.9948 1.0943 -2.4081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326361806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:11 Heat of formation + Delta-G solvation = -122.131898 kcal Electronic energy + Delta-G solvation = -28551.053061 eV Core-core repulsion = 23881.877760 eV Total energy + Delta-G solvation = -4669.175300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.89534 -47.92586 -42.52211 -41.58708 -39.83257 -38.05031 -36.63713 -35.67311 -34.66161 -32.76482 -31.09793 -30.19599 -28.72666 -27.98076 -26.14045 -24.88152 -23.96219 -22.67892 -21.97727 -21.69724 -20.98402 -19.59855 -19.23488 -18.51605 -18.33681 -18.08507 -17.78923 -17.40036 -17.21472 -16.75187 -16.33626 -16.18781 -15.85544 -15.63234 -15.24248 -15.21777 -15.02079 -14.89289 -14.60588 -14.20616 -13.99048 -13.97016 -13.89084 -13.79484 -13.59923 -13.27143 -13.17791 -12.76354 -12.61864 -12.15917 -12.14203 -12.04346 -11.96038 -11.89501 -11.68548 -11.50130 -11.03650 -10.83779 -10.69917 -10.37662 -9.92303 -9.30793 -8.78942 -6.56545 0.01155 0.80515 1.05047 1.51127 1.57166 1.68744 1.73315 1.79865 2.21015 2.46199 2.52302 2.93405 3.00723 3.21850 3.42210 3.58654 3.65403 3.80318 3.88682 4.03098 4.09716 4.22563 4.46117 4.50722 4.59822 4.61314 4.70256 4.73932 4.76476 4.83942 4.90467 4.92972 5.01307 5.05123 5.24808 5.43745 5.52499 5.69194 5.76604 5.89393 6.11406 6.24709 6.40109 6.52190 6.76060 6.86550 7.18596 8.58247 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.030012 B = 0.001572 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.725286 B =17809.849184 C =18149.290534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 H 0.108 0.892 4 C 0.120 3.880 5 N -0.679 5.679 6 C 0.524 3.476 7 O -0.536 6.536 8 C 0.517 3.483 9 O -0.506 6.506 10 N -0.601 5.601 11 C 0.261 3.739 12 C -0.284 4.284 13 C 0.059 3.941 14 N -0.339 5.339 15 C 0.258 3.742 16 C -0.624 4.624 17 H 0.045 0.955 18 C -0.017 4.017 19 N -0.922 5.922 20 Si 1.118 2.882 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.277 1.277 24 N -0.342 5.342 25 C -0.161 4.161 26 C 0.256 3.744 27 F -0.223 7.223 28 F -0.214 7.214 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.422 0.578 35 H 0.428 0.572 36 H 0.180 0.820 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 1.998 -32.871 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.110 4.110 3 H 0.126 0.874 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.303 3.697 7 O -0.413 6.413 8 C 0.298 3.702 9 O -0.380 6.380 10 N -0.251 5.251 11 C 0.006 3.994 12 C -0.315 4.315 13 C -0.089 4.089 14 N -0.121 5.121 15 C 0.139 3.861 16 C -0.662 4.662 17 H 0.063 0.937 18 C -0.217 4.217 19 N -0.558 5.558 20 Si 0.939 3.061 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.203 1.203 24 N -0.173 5.173 25 C -0.199 4.199 26 C 0.202 3.798 27 F -0.205 7.205 28 F -0.196 7.196 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.261 0.739 35 H 0.266 0.734 36 H 0.197 0.803 37 H 0.224 0.776 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.772 0.334 -30.681 30.692 hybrid contribution 0.006 1.263 -1.612 2.048 sum 0.778 1.597 -32.293 32.342 Atomic orbital electron populations 1.22309 0.94337 1.02810 1.03667 1.21238 0.96808 1.01216 0.91778 0.87378 1.21691 1.01285 0.95376 0.81879 1.45662 1.55271 1.28235 1.04108 1.19376 0.80840 0.84917 0.84542 1.90811 1.39676 1.24184 1.86653 1.20415 0.80196 0.85649 0.83974 1.90687 1.37691 1.23456 1.86123 1.42139 1.54270 1.26594 1.02101 1.19346 0.99555 0.93895 0.86567 1.21778 1.12411 0.99494 0.97811 1.23270 0.98237 0.96667 0.90713 1.48633 1.40342 1.15984 1.07138 1.19468 0.97125 0.98983 0.70537 1.22297 1.46114 1.02879 0.94902 0.93694 1.27225 0.94699 1.06364 0.93431 1.70949 1.39017 1.07811 1.38033 0.82892 0.76541 0.70747 0.75882 1.19949 1.19596 1.20285 1.77342 1.25878 1.14952 0.99132 1.22608 1.05056 1.00651 0.91594 1.22348 0.73972 1.00483 0.82960 1.92968 1.85042 1.86889 1.55557 1.92892 1.32752 1.97811 1.96119 0.92389 0.89897 0.92895 0.89601 0.90839 0.73891 0.73360 0.80326 0.77595 0.92375 0.96420 0.92888 0.86504 0.89445 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 8.52 71.98 0.61 -0.65 16 2 C -0.09 -0.38 2.42 -10.80 -0.03 -0.40 16 3 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 4 C 0.12 1.06 5.06 86.38 0.44 1.50 16 5 N -0.68 -9.05 5.28 -464.54 -2.45 -11.50 16 6 C 0.52 11.14 7.89 87.23 0.69 11.83 16 7 O -0.54 -13.87 16.48 -3.28 -0.05 -13.93 16 8 C 0.52 13.61 7.85 87.24 0.69 14.29 16 9 O -0.51 -14.09 13.60 -3.37 -0.05 -14.14 16 10 N -0.60 -18.77 5.43 -308.90 -1.68 -20.45 16 11 C 0.26 10.13 8.10 133.40 1.08 11.21 16 12 C -0.28 -10.20 9.60 22.11 0.21 -9.99 16 13 C 0.06 2.18 11.43 83.51 0.95 3.14 16 14 N -0.34 -15.51 3.67 -351.84 -1.29 -16.80 16 15 C 0.26 13.02 5.57 85.64 0.48 13.50 16 16 C -0.62 -35.25 9.24 25.60 0.24 -35.02 16 17 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 18 C -0.02 -0.96 5.46 84.65 0.46 -0.50 16 19 N -0.92 -53.45 13.65 21.45 0.29 -53.16 16 20 Si 1.12 49.64 29.90 68.60 2.05 51.69 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 N -0.34 -15.87 12.42 -54.54 -0.68 -16.54 16 25 C -0.16 -0.56 5.02 30.59 0.15 -0.40 16 26 C 0.26 1.42 5.25 71.98 0.38 1.79 16 27 F -0.22 -2.54 17.34 44.97 0.78 -1.76 16 28 F -0.21 -2.26 14.15 44.97 0.64 -1.63 16 29 H 0.06 0.45 7.18 -2.39 -0.02 0.43 16 30 H 0.08 0.63 5.43 -2.39 -0.01 0.62 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.42 4.48 7.12 -92.71 -0.66 3.82 16 35 H 0.43 12.48 8.29 -92.71 -0.77 11.72 16 36 H 0.18 5.77 5.91 -2.91 -0.02 5.75 16 37 H 0.21 5.75 8.06 -2.91 -0.02 5.72 16 38 H 0.06 2.78 7.94 -2.39 -0.02 2.76 16 39 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 40 H 0.26 14.93 7.22 -92.71 -0.67 14.26 16 41 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.14 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -73.49 374.63 3.67 -69.82 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.25 Total: 18.06 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.35 Total: 10.32 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -5.80 Total: -118.45 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.10 Total: -28.06 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 1.42 Total: -3.39 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.05 Total: 51.69 kcal Total: -73.49 3.67 -69.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326361806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.309 kcal (2) G-P(sol) polarization free energy of solvation -73.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds