Wall clock time and date at job start Wed Apr 1 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 N 1.46501 * 109.47174 * 65.00624 * 4 2 1 6 6 C 1.34775 * 120.00279 * 179.97438 * 5 4 2 7 7 O 1.21369 * 119.99855 * 0.02562 * 6 5 4 8 8 C 1.49342 * 120.00259 * 179.97438 * 6 5 4 9 9 O 1.21391 * 119.99780 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99879 * 180.02562 * 8 6 5 11 11 C 1.39932 * 119.99643 * 180.02562 * 10 8 6 12 12 C 1.40460 * 125.98099 * 359.71157 * 11 10 8 13 13 C 1.35219 * 107.86829 * 179.86495 * 12 11 10 14 14 N 1.34992 * 107.87203 * 0.39796 * 13 12 11 15 15 C 1.46503 * 125.96924 * 179.72935 * 14 13 12 16 16 C 1.50696 * 109.47137 * 124.99868 * 15 14 13 17 17 H 1.08002 * 119.99733 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99859 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00150 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99783 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46930 * 89.99840 * 20 18 16 22 22 H 1.48491 * 109.47022 * 209.99790 * 20 18 16 23 23 H 1.48493 * 109.47140 * 330.00051 * 20 18 16 24 24 N 1.31275 * 125.97926 * 180.02562 * 11 10 8 25 25 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 26 26 C 1.53000 * 109.47060 * 294.99938 * 25 2 1 27 27 F 1.39900 * 109.47270 * 64.99769 * 26 25 2 28 28 F 1.39903 * 109.47042 * 185.00317 * 26 25 2 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 32 32 H 1.09007 * 109.46705 * 184.99884 * 4 2 1 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 0.97000 * 119.99933 * 359.97438 * 5 4 2 35 35 H 0.96993 * 120.00520 * 359.97438 * 10 8 6 36 36 H 1.08002 * 126.06872 * 0.02562 * 12 11 10 37 37 H 1.07994 * 126.06625 * 180.10458 * 13 12 11 38 38 H 1.09002 * 109.47083 * 244.99560 * 15 14 13 39 39 H 1.08997 * 109.47170 * 4.99198 * 15 14 13 40 40 H 0.97003 * 120.00212 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.47500 * 54.99635 * 25 2 1 42 42 H 1.09000 * 109.47325 * 174.99723 * 25 2 1 43 43 H 1.08998 * 109.46800 * 304.99825 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 1.9963 -0.4133 -3.6659 7 8 2.6267 -1.4442 -3.7793 8 6 1.6008 0.3577 -4.8823 9 8 0.9700 1.3886 -4.7689 10 7 1.9443 -0.0911 -6.1058 11 6 1.5742 0.6316 -7.2454 12 6 0.8430 1.8308 -7.2607 13 6 0.6953 2.2103 -8.5501 14 7 1.2999 1.2857 -9.3259 15 6 1.3733 1.3049 -10.7890 16 6 2.8143 1.2160 -11.2209 17 1 3.5971 1.1512 -10.4798 18 6 3.1332 1.2174 -12.5623 19 7 2.1799 1.2958 -13.4648 20 14 4.9195 1.1079 -13.0977 21 1 5.3002 -0.3180 -13.2630 22 1 5.0936 1.8196 -14.3893 23 1 5.7847 1.7348 -12.0665 24 7 1.8446 0.3045 -8.4877 25 6 2.0401 -0.7212 1.2492 26 6 1.6353 0.0690 2.4953 27 9 0.2413 0.0723 2.6130 28 9 2.1977 -0.5276 3.6289 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 1.1484 0.8590 -2.3518 35 1 2.4487 -0.9146 -6.1964 36 1 0.4677 2.3578 -6.3959 37 1 0.1805 3.0936 -8.8980 38 1 0.8203 0.4563 -11.1917 39 1 0.9385 2.2320 -11.1624 40 1 2.4042 1.2964 -14.4085 41 1 1.6054 -1.7198 1.2952 42 1 3.1264 -0.7995 1.2056 43 1 1.9950 1.0942 2.4080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326361808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:15 Heat of formation + Delta-G solvation = -118.633242 kcal Electronic energy + Delta-G solvation = -28513.798126 eV Core-core repulsion = 23844.774539 eV Total energy + Delta-G solvation = -4669.023587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.88611 -47.91692 -42.44243 -41.52460 -39.78663 -38.02988 -36.49023 -35.36754 -34.63164 -32.83260 -31.01711 -30.18510 -28.92912 -28.10627 -26.16912 -24.75721 -23.91473 -22.58506 -21.86744 -21.63563 -20.93184 -19.51605 -18.70987 -18.49368 -18.27137 -18.06867 -17.79910 -17.34848 -17.20458 -16.87190 -16.34646 -16.22868 -16.00672 -15.64489 -15.19026 -15.14976 -14.87784 -14.59700 -14.57519 -14.24931 -13.96614 -13.91397 -13.86801 -13.69985 -13.58405 -13.17332 -13.01351 -12.80847 -12.62779 -12.31033 -12.13652 -12.12951 -12.03084 -11.88007 -11.65201 -11.49182 -11.42785 -10.79722 -10.72456 -10.35509 -9.83183 -9.21403 -8.33874 -6.47449 0.05494 0.86762 1.14390 1.38067 1.39499 1.50234 1.75095 1.84116 2.26808 2.33956 2.58010 2.94802 2.98586 3.25545 3.43130 3.59833 3.66477 3.89958 3.91807 4.04305 4.22766 4.23861 4.47433 4.61037 4.64096 4.71853 4.84267 4.85261 4.88917 4.94138 4.95490 5.02743 5.03219 5.07231 5.26292 5.45126 5.55969 5.74698 5.79327 5.85572 6.15701 6.25683 6.56546 6.64010 6.79369 6.97072 7.22588 8.73925 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.001573 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.194298 B =17800.059321 C =18366.003202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 H 0.107 0.893 4 C 0.120 3.880 5 N -0.679 5.679 6 C 0.524 3.476 7 O -0.537 6.537 8 C 0.516 3.484 9 O -0.507 6.507 10 N -0.601 5.601 11 C 0.258 3.742 12 C -0.287 4.287 13 C 0.060 3.940 14 N -0.340 5.340 15 C 0.271 3.729 16 C -0.550 4.550 17 H 0.052 0.948 18 C 0.020 3.980 19 N -0.919 5.919 20 Si 0.970 3.030 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.273 1.273 24 N -0.342 5.342 25 C -0.161 4.161 26 C 0.256 3.744 27 F -0.214 7.214 28 F -0.223 7.223 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.422 0.578 35 H 0.428 0.572 36 H 0.177 0.823 37 H 0.207 0.793 38 H 0.022 0.978 39 H 0.063 0.937 40 H 0.273 0.727 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 0.275 31.760 31.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.111 4.111 3 H 0.126 0.874 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.303 3.697 7 O -0.414 6.414 8 C 0.297 3.703 9 O -0.380 6.380 10 N -0.251 5.251 11 C 0.004 3.996 12 C -0.318 4.318 13 C -0.088 4.088 14 N -0.122 5.122 15 C 0.152 3.848 16 C -0.588 4.588 17 H 0.070 0.930 18 C -0.180 4.180 19 N -0.558 5.558 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.174 5.174 25 C -0.199 4.199 26 C 0.202 3.798 27 F -0.196 7.196 28 F -0.205 7.205 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.261 0.739 35 H 0.266 0.734 36 H 0.195 0.805 37 H 0.224 0.776 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.857 -0.584 30.760 30.822 hybrid contribution 0.254 0.132 -0.243 0.376 sum -1.603 -0.451 30.517 30.563 Atomic orbital electron populations 1.22307 0.94272 1.02829 1.03674 1.21239 0.96865 1.01185 0.91778 0.87450 1.21686 1.01238 0.95391 0.81903 1.45662 1.55280 1.28255 1.04119 1.19404 0.80800 0.84916 0.84570 1.90810 1.39681 1.24217 1.86678 1.20392 0.80276 0.85647 0.83987 1.90689 1.37815 1.23397 1.86122 1.42128 1.54155 1.26640 1.02140 1.19339 0.99472 0.94200 0.86608 1.21758 1.12633 0.99551 0.97841 1.23258 0.98339 0.96536 0.90707 1.48906 1.39489 1.16136 1.07635 1.19387 0.97938 0.98456 0.68981 1.21407 0.92211 1.52661 0.92496 0.92971 1.25704 1.02444 0.93905 0.95991 1.69982 1.34144 1.49750 1.01875 0.85368 0.78908 0.78475 0.77791 1.19999 1.19611 1.19751 1.77321 1.25012 1.15895 0.99133 1.22609 1.05031 1.00664 0.91601 1.22346 0.73980 1.00475 0.82961 1.92892 1.32727 1.97811 1.96120 1.92969 1.85042 1.86885 1.55568 0.92847 0.89925 0.92343 0.89714 0.90779 0.73896 0.73409 0.80546 0.77642 0.95959 0.91895 0.91823 0.89404 0.86562 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 8.52 71.98 0.61 -0.63 16 2 C -0.09 -0.40 2.42 -10.79 -0.03 -0.42 16 3 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 4 C 0.12 1.09 5.06 86.38 0.44 1.53 16 5 N -0.68 -9.21 5.28 -464.51 -2.45 -11.66 16 6 C 0.52 11.25 7.89 87.24 0.69 11.94 16 7 O -0.54 -14.00 16.48 -3.30 -0.05 -14.05 16 8 C 0.52 13.71 7.85 87.24 0.69 14.39 16 9 O -0.51 -14.25 13.60 -3.37 -0.05 -14.29 16 10 N -0.60 -18.84 5.43 -308.89 -1.68 -20.52 16 11 C 0.26 10.04 8.10 133.40 1.08 11.12 16 12 C -0.29 -10.35 9.60 22.11 0.21 -10.14 16 13 C 0.06 2.22 11.43 83.51 0.95 3.18 16 14 N -0.34 -15.52 3.67 -351.84 -1.29 -16.81 16 15 C 0.27 13.79 6.26 85.63 0.54 14.33 16 16 C -0.55 -30.75 9.24 25.60 0.24 -30.51 16 17 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 18 C 0.02 1.11 5.46 84.66 0.46 1.57 16 19 N -0.92 -51.56 13.29 21.45 0.28 -51.27 16 20 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 N -0.34 -15.82 12.42 -54.53 -0.68 -16.49 16 25 C -0.16 -0.58 5.02 30.59 0.15 -0.43 16 26 C 0.26 1.46 5.25 71.98 0.38 1.83 16 27 F -0.21 -2.27 14.15 44.97 0.64 -1.63 16 28 F -0.22 -2.58 17.34 44.97 0.78 -1.80 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.63 5.43 -2.39 -0.01 0.61 16 31 H 0.06 0.45 7.18 -2.39 -0.02 0.43 16 32 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.42 4.58 7.12 -92.71 -0.66 3.92 16 35 H 0.43 12.51 8.29 -92.71 -0.77 11.74 16 36 H 0.18 5.75 5.91 -2.91 -0.02 5.73 16 37 H 0.21 5.78 8.06 -2.91 -0.02 5.76 16 38 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 3.09 8.07 -2.39 -0.02 3.07 16 40 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -71.01 375.94 3.59 -67.42 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.35 Total: 17.86 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 6.41 Total: 17.75 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.81 Total: -116.75 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.10 Total: -28.34 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 1.42 Total: -3.43 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.01 3.59 -67.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326361808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.212 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds