Wall clock time and date at job start Wed Apr 1 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 C 1.50702 * 109.47195 * 119.99943 * 2 1 3 5 5 H 1.07999 * 119.99135 * 120.00194 * 4 2 1 6 6 C 1.37871 * 119.99983 * 300.00271 * 4 2 1 7 7 N 1.31511 * 120.00422 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99564 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47064 * 90.00056 * 8 6 4 10 10 H 1.48504 * 109.46588 * 209.99822 * 8 6 4 11 11 H 1.48495 * 109.47183 * 329.99609 * 8 6 4 12 12 N 1.46498 * 109.47102 * 240.00403 * 2 1 3 13 13 C 1.46500 * 119.99916 * 299.99977 * 12 2 1 14 14 C 1.34775 * 119.99998 * 119.99767 * 12 2 1 15 15 O 1.21277 * 120.00636 * 3.87956 * 14 12 2 16 16 C 1.50705 * 119.99733 * 183.88169 * 14 12 2 17 17 C 1.52999 * 109.46967 * 300.33807 * 16 14 12 18 18 C 1.52998 * 109.47020 * 180.33915 * 16 14 12 19 19 N 1.46501 * 109.47259 * 60.33881 * 16 14 12 20 20 C 1.34522 * 124.45824 * 17.67088 * 19 16 14 21 21 O 1.21449 * 125.71015 * 0.03988 * 20 19 16 22 22 C 1.47823 * 108.57740 * 179.90724 * 20 19 16 23 23 C 1.38566 * 134.29791 * 180.10073 * 22 20 19 24 24 C 1.38607 * 119.71984 * 180.27220 * 23 22 20 25 25 C 1.38231 * 120.46051 * 0.02562 * 24 23 22 26 26 C 1.38621 * 120.45717 * 359.95628 * 25 24 23 27 27 C 1.38561 * 119.71936 * 0.04410 * 26 25 24 28 28 C 1.34528 * 124.45723 * 197.97414 * 19 16 14 29 29 O 1.21437 * 125.71221 * 359.93615 * 28 19 16 30 30 H 1.08994 * 109.46994 * 299.99707 * 1 2 3 31 31 H 1.08994 * 109.46825 * 59.99816 * 1 2 3 32 32 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 33 33 H 0.97002 * 120.00420 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47055 * 274.99560 * 13 12 2 35 35 H 1.08998 * 109.47307 * 34.99237 * 13 12 2 36 36 H 1.08994 * 109.47630 * 154.99416 * 13 12 2 37 37 H 1.09004 * 109.46980 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47582 * 300.00312 * 17 16 14 39 39 H 1.09007 * 109.47387 * 60.00088 * 17 16 14 40 40 H 1.08992 * 109.47386 * 299.99802 * 18 16 14 41 41 H 1.09008 * 109.47127 * 59.99842 * 18 16 14 42 42 H 1.08999 * 109.47188 * 179.97438 * 18 16 14 43 43 H 1.07998 * 120.13759 * 0.29767 * 23 22 20 44 44 H 1.08001 * 119.77245 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.77391 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.13847 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3227 -1.1196 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3445 -0.9491 5.1122 11 1 2.4882 -2.5654 3.7121 12 7 2.0184 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.1443 1.1031 -1.8573 16 6 3.2232 -0.7179 -3.3564 17 6 4.0237 -1.9763 -3.0151 18 6 4.0956 0.2349 -4.1761 19 7 2.0393 -1.0886 -4.1357 20 6 0.8121 -0.5702 -3.9489 21 8 0.5147 0.2669 -3.1208 22 6 -0.1131 -1.1876 -4.9225 23 6 -1.4643 -1.0481 -5.1962 24 6 -2.0429 -1.8038 -6.2038 25 6 -1.2816 -2.6952 -6.9364 26 6 0.0713 -2.8451 -6.6740 27 6 0.6633 -2.0962 -5.6696 28 6 2.0352 -1.9965 -5.1284 29 8 2.9975 -2.6281 -5.5153 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7095 1.1617 3.4845 34 1 2.3657 -2.7373 -0.8976 35 1 0.6540 -2.2779 -1.0635 36 1 1.7103 -2.3077 -2.4957 37 1 4.3351 -2.4696 -3.9358 38 1 4.9045 -1.7005 -2.4352 39 1 3.4022 -2.6551 -2.4310 40 1 3.5253 1.1313 -4.4193 41 1 4.9765 0.5107 -3.5963 42 1 4.4070 -0.2588 -5.0967 43 1 -2.0639 -0.3533 -4.6270 44 1 -3.0958 -1.6955 -6.4182 45 1 -1.7439 -3.2788 -7.7188 46 1 0.6613 -3.5427 -7.2498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337669678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:22 Heat of formation + Delta-G solvation = -38.675307 kcal Electronic energy + Delta-G solvation = -32278.530551 eV Core-core repulsion = 28134.910978 eV Total energy + Delta-G solvation = -4143.619572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.87110 -41.07904 -39.83611 -39.28994 -37.45956 -37.19038 -35.49265 -34.63646 -32.08616 -31.52769 -31.28769 -28.68176 -27.75146 -27.33315 -26.30313 -25.71101 -24.54138 -22.95858 -22.23461 -21.19912 -19.99520 -18.90210 -18.68023 -18.33026 -17.97309 -17.65910 -17.30283 -16.55286 -16.44203 -16.16235 -16.07883 -15.66812 -15.36520 -15.14782 -15.00721 -14.96700 -14.62223 -14.44736 -14.10612 -13.79952 -13.72725 -13.51698 -13.44260 -13.28736 -13.12858 -13.04990 -12.91688 -12.81507 -12.65979 -12.50490 -12.36466 -12.18500 -12.12142 -11.55742 -11.46320 -11.21181 -11.00882 -10.64236 -10.49099 -10.18191 -10.16333 -9.38895 -8.16052 -6.33941 -0.98722 0.02453 0.86355 1.00734 1.38841 1.40631 1.50732 1.78845 1.83363 2.09113 2.41448 2.62382 2.65484 3.10912 3.19636 3.25233 3.59582 3.62503 3.66356 3.93430 4.08666 4.09858 4.21614 4.27467 4.41126 4.45787 4.48918 4.51132 4.56562 4.62700 4.75961 4.80507 4.88081 4.90455 4.94694 4.99508 5.05201 5.07431 5.25281 5.30745 5.41449 5.48363 5.56629 5.62473 5.74033 5.97051 6.11875 6.13561 6.51106 6.68947 6.72922 7.19304 7.39415 8.88536 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.003940 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.716576 B = 7104.352379 C = 7894.123726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.273 3.727 3 H 0.004 0.996 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.261 1.261 12 N -0.578 5.578 13 C 0.080 3.920 14 C 0.511 3.489 15 O -0.585 6.585 16 C 0.153 3.847 17 C -0.172 4.172 18 C -0.133 4.133 19 N -0.571 5.571 20 C 0.547 3.453 21 O -0.472 6.472 22 C -0.156 4.156 23 C -0.052 4.052 24 C -0.081 4.081 25 C -0.080 4.080 26 C -0.037 4.037 27 C -0.154 4.154 28 C 0.579 3.421 29 O -0.474 6.474 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.178 0.822 45 H 0.186 0.814 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -12.636 -23.390 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.171 3.829 3 H 0.022 0.978 4 C -0.580 4.580 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.185 1.185 12 N -0.308 5.308 13 C -0.063 4.063 14 C 0.297 3.703 15 O -0.466 6.466 16 C 0.067 3.933 17 C -0.229 4.229 18 C -0.191 4.191 19 N -0.316 5.316 20 C 0.338 3.662 21 O -0.343 6.343 22 C -0.159 4.159 23 C -0.071 4.071 24 C -0.099 4.099 25 C -0.097 4.097 26 C -0.055 4.055 27 C -0.157 4.157 28 C 0.370 3.630 29 O -0.346 6.346 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.158 0.842 44 H 0.196 0.804 45 H 0.203 0.797 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.516 -11.791 -22.804 26.258 hybrid contribution 0.524 0.550 1.612 1.783 sum -4.992 -11.241 -21.192 24.502 Atomic orbital electron populations 1.21770 0.97226 0.99321 0.99777 1.18448 0.91542 0.91733 0.81144 0.97838 1.21571 1.32109 1.13135 0.91138 0.92135 1.25772 0.94961 0.95638 1.02076 1.70045 1.37212 1.23922 1.24444 0.85411 0.77836 0.79156 0.78331 1.20679 1.20378 1.18515 1.47934 1.47779 1.12404 1.22637 1.22018 1.01696 0.81784 1.00816 1.20507 0.78543 0.85955 0.85252 1.90612 1.57593 1.19849 1.78523 1.21025 0.85065 0.98589 0.88574 1.22597 1.00597 0.94492 1.05219 1.21895 0.99283 0.97693 1.00192 1.46904 1.10180 1.40080 1.34454 1.19263 0.82889 0.80829 0.83246 1.90952 1.79329 1.29526 1.34500 1.20425 0.96258 1.00872 0.98393 1.21113 0.90900 0.98203 0.96888 1.21918 1.02484 0.93140 0.92309 1.21989 0.91973 0.96675 0.99095 1.21205 0.95808 0.95689 0.92831 1.20494 0.92042 1.01930 1.01282 1.18642 0.89469 0.77141 0.77723 1.90720 1.40006 1.43961 1.59958 0.91572 0.95996 0.94336 0.92602 0.91564 0.91521 0.90798 0.87391 0.89821 0.90136 0.93248 0.89910 0.88935 0.84190 0.80426 0.79699 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.54 8.92 71.98 0.64 -5.90 16 2 C 0.27 15.47 2.63 44.25 0.12 15.59 16 3 H 0.00 0.25 6.91 -2.39 -0.02 0.23 16 4 C -0.54 -31.06 8.37 25.60 0.21 -30.84 16 5 H 0.06 3.35 7.50 -2.91 -0.02 3.33 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -55.17 11.32 21.44 0.24 -54.92 16 8 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.58 -27.40 1.73 -826.80 -1.43 -28.83 16 13 C 0.08 3.00 7.32 127.77 0.94 3.94 16 14 C 0.51 23.87 4.47 87.66 0.39 24.27 16 15 O -0.59 -32.71 15.32 -3.02 -0.05 -32.76 16 16 C 0.15 5.34 0.70 2.86 0.00 5.34 16 17 C -0.17 -5.00 7.73 71.98 0.56 -4.45 16 18 C -0.13 -4.20 8.03 71.98 0.58 -3.62 16 19 N -0.57 -17.93 1.18 -722.64 -0.86 -18.79 16 20 C 0.55 18.55 6.38 86.82 0.55 19.10 16 21 O -0.47 -20.54 13.48 -3.56 -0.05 -20.59 16 22 C -0.16 -3.74 6.41 -20.00 -0.13 -3.87 16 23 C -0.05 -0.89 10.09 22.44 0.23 -0.66 16 24 C -0.08 -0.64 10.04 22.36 0.22 -0.41 16 25 C -0.08 -0.45 10.04 22.36 0.22 -0.22 16 26 C -0.04 -0.41 10.09 22.44 0.23 -0.19 16 27 C -0.15 -3.12 6.40 -20.00 -0.13 -3.25 16 28 C 0.58 15.06 7.42 86.82 0.64 15.71 16 29 O -0.47 -12.75 15.47 -3.52 -0.05 -12.80 16 30 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 31 H 0.02 1.13 6.82 -2.39 -0.02 1.11 16 32 H 0.04 1.87 6.69 -2.39 -0.02 1.86 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 34 H 0.07 2.35 7.27 -2.39 -0.02 2.33 16 35 H 0.07 2.54 6.45 -2.39 -0.02 2.52 16 36 H 0.07 2.41 3.65 -2.39 -0.01 2.40 16 37 H 0.11 2.79 5.92 -2.39 -0.01 2.78 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 2.33 4.39 -2.38 -0.01 2.32 16 40 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.08 2.61 8.10 -2.38 -0.02 2.59 16 42 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.19 -0.48 8.06 -2.91 -0.02 -0.50 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -82.43 364.39 6.59 -75.84 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.03 Total: 14.48 kcal Atomic # 6 Polarization: 26.12 SS G_CDS: 5.73 Total: 31.85 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -2.04 Total: -102.54 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -0.15 Total: -66.15 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -82.43 6.59 -75.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337669678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.164 kcal (2) G-P(sol) polarization free energy of solvation -82.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds