Wall clock time and date at job start Wed Apr 1 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47079 * 2 1 4 4 C 1.52997 * 109.47251 * 119.99679 * 2 1 3 5 5 N 1.46498 * 109.47219 * 174.99592 * 4 2 1 6 6 C 1.34775 * 120.00159 * 180.02562 * 5 4 2 7 7 O 1.21687 * 120.00074 * 0.02562 * 6 5 4 8 8 C 1.46657 * 119.99819 * 180.02562 * 6 5 4 9 9 C 1.36545 * 125.98405 * 179.71762 * 8 6 5 10 10 C 1.40375 * 106.70758 * 179.84691 * 9 8 6 11 11 C 1.35125 * 107.11253 * 0.40920 * 10 9 8 12 12 O 1.33939 * 108.76718 * 359.74499 * 11 10 9 13 13 N 1.46895 * 109.46889 * 239.99932 * 2 1 3 14 14 C 1.46901 * 111.00334 * 85.00116 * 13 2 1 15 15 C 1.50698 * 109.47352 * 180.02562 * 14 13 2 16 16 C 1.38304 * 119.92749 * 269.72303 * 15 14 13 17 17 C 1.38100 * 120.06999 * 179.72384 * 16 15 14 18 18 C 1.38881 * 119.92451 * 0.57318 * 17 16 15 19 19 O 1.35759 * 120.06596 * 179.68057 * 18 17 16 20 20 C 1.34828 * 116.99919 * 174.48652 * 19 18 17 21 21 H 1.07999 * 120.00023 * 5.05775 * 20 19 18 22 22 C 1.38653 * 119.99761 * 185.05672 * 20 19 18 23 23 N 1.31563 * 120.00396 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00125 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47219 * 89.99628 * 24 22 20 26 26 H 1.48497 * 109.47567 * 210.00260 * 24 22 20 27 27 H 1.48512 * 109.46770 * 330.00092 * 24 22 20 28 28 C 1.38875 * 119.86501 * 359.70062 * 18 17 16 29 29 C 1.38095 * 119.93157 * 0.02562 * 28 18 17 30 30 H 1.08996 * 109.47676 * 59.99805 * 1 2 3 31 31 H 1.08994 * 109.47235 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47046 * 300.00248 * 1 2 3 33 33 H 1.08998 * 109.47400 * 295.00069 * 4 2 1 34 34 H 1.09003 * 109.46818 * 54.99958 * 4 2 1 35 35 H 0.97009 * 120.00081 * 0.02562 * 5 4 2 36 36 H 1.08005 * 126.64935 * 359.95850 * 9 8 6 37 37 H 1.07999 * 126.44367 * 180.15200 * 10 9 8 38 38 H 1.08000 * 125.62136 * 179.77849 * 11 10 9 39 39 H 1.00900 * 111.00719 * 321.04474 * 13 2 1 40 40 H 1.09008 * 109.47035 * 299.99948 * 14 13 2 41 41 H 1.09003 * 109.46943 * 59.99445 * 14 13 2 42 42 H 1.08001 * 119.96520 * 359.97438 * 16 15 14 43 43 H 1.07995 * 120.03887 * 180.27339 * 17 16 15 44 44 H 0.96993 * 119.99829 * 179.97438 * 23 22 20 45 45 H 1.08008 * 120.03316 * 179.97438 * 28 18 17 46 46 H 1.07999 * 119.96567 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4291 2.1906 7 8 3.5679 -1.8864 3.1422 8 6 5.6347 -1.5339 2.1320 9 6 6.4360 -2.1114 3.0748 10 6 7.7556 -1.9911 2.6113 11 6 7.7032 -1.3454 1.4255 12 8 6.4235 -1.0716 1.1401 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5872 -0.5219 -3.5560 16 6 3.9439 -0.5689 -3.8207 17 6 4.4102 -1.2551 -4.9247 18 6 3.5142 -1.8883 -5.7762 19 8 3.9689 -2.5582 -6.8659 20 6 3.0591 -3.2450 -7.5859 21 1 2.0107 -3.1794 -7.3350 22 6 3.4695 -4.0357 -8.6484 23 7 4.7467 -4.1161 -8.9537 24 14 2.2092 -4.9880 -9.6455 25 1 1.7357 -4.1490 -10.7756 26 1 2.8316 -6.2275 -10.1759 27 1 1.0581 -5.3444 -8.7774 28 6 2.1520 -1.8345 -5.5108 29 6 1.6925 -1.1515 -4.4021 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.9825 -0.4622 0.4318 36 1 6.1165 -2.5732 3.9973 37 1 8.6457 -2.3441 3.1108 38 1 8.5530 -1.0922 0.8090 39 1 1.4495 -1.4979 -1.4101 40 1 1.0870 0.6163 -2.5526 41 1 2.7588 1.0462 -2.1182 42 1 4.6397 -0.0718 -3.1610 43 1 5.4700 -1.2951 -5.1285 44 1 5.0338 -4.6695 -9.6968 45 1 1.4528 -2.3256 -6.1714 46 1 0.6334 -1.1096 -4.1950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001376674104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:41 Heat of formation + Delta-G solvation = -23.602572 kcal Electronic energy + Delta-G solvation = -28572.445945 eV Core-core repulsion = 24429.479976 eV Total energy + Delta-G solvation = -4142.965969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86340 -39.67875 -39.11092 -37.76301 -36.42806 -34.35089 -33.24215 -32.42765 -31.59111 -30.19999 -30.16031 -28.52004 -26.72755 -25.56463 -24.07874 -23.09927 -22.01152 -21.94872 -21.23553 -20.46237 -20.36879 -18.65602 -18.00443 -17.07343 -16.57882 -16.48912 -16.37936 -15.90692 -15.21548 -14.99681 -14.60136 -14.55674 -14.33553 -14.02288 -13.70399 -13.62054 -13.39503 -13.23435 -13.17000 -12.99030 -12.86275 -12.72584 -12.70879 -12.47345 -12.04129 -11.91296 -11.59309 -11.32953 -11.21595 -10.80412 -10.66470 -10.58522 -10.47273 -10.44474 -10.29251 -9.36127 -9.32347 -8.87022 -8.85526 -8.50050 -8.19748 -7.21383 -6.47573 -4.06496 0.87207 2.13391 2.20084 2.24662 2.48973 3.02263 3.09406 3.10576 3.11797 3.16496 3.94269 4.06728 4.48533 4.54993 4.63621 4.66926 4.73864 4.85043 4.98447 5.07452 5.24919 5.26288 5.28292 5.34929 5.38654 5.45911 5.53745 5.54967 5.62991 5.68208 5.73190 5.79082 5.84233 5.86559 6.07453 6.18186 6.20095 6.39901 6.60826 6.67736 6.85646 6.93724 7.03212 7.23216 7.27912 7.36513 7.39419 7.42594 7.80407 7.94459 7.97423 8.98110 9.68098 10.70428 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.002298 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.578911 B =12183.974607 C =13867.844370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.084 0.916 4 C 0.132 3.868 5 N -0.701 5.701 6 C 0.600 3.400 7 O -0.531 6.531 8 C -0.077 4.077 9 C -0.124 4.124 10 C -0.229 4.229 11 C -0.003 4.003 12 O -0.160 6.160 13 N -0.681 5.681 14 C 0.119 3.881 15 C -0.187 4.187 16 C -0.052 4.052 17 C -0.194 4.194 18 C 0.156 3.844 19 O -0.178 6.178 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.235 4.235 29 C -0.065 4.065 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.211 0.789 39 H 0.347 0.653 40 H 0.030 0.970 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 8.824 20.300 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.043 4.043 3 H 0.102 0.898 4 C 0.007 3.993 5 N -0.351 5.351 6 C 0.386 3.614 7 O -0.410 6.410 8 C -0.129 4.129 9 C -0.145 4.145 10 C -0.248 4.248 11 C -0.074 4.074 12 O -0.054 6.054 13 N -0.313 5.313 14 C -0.009 4.009 15 C -0.188 4.188 16 C -0.070 4.070 17 C -0.214 4.214 18 C 0.102 3.898 19 O -0.081 6.081 20 C -0.468 4.468 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.254 4.254 29 C -0.084 4.084 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.251 0.749 36 H 0.176 0.824 37 H 0.174 0.826 38 H 0.227 0.773 39 H 0.166 0.834 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.665 8.600 20.573 22.308 hybrid contribution -1.177 -0.428 -1.052 1.635 sum -1.842 8.172 19.521 21.243 Atomic orbital electron populations 1.22412 0.96054 1.02769 1.02674 1.21831 0.93488 0.98337 0.90691 0.89759 1.21428 0.79419 1.01285 0.97128 1.45705 1.08074 1.58274 1.23048 1.16551 0.83214 0.78594 0.83006 1.90866 1.67219 1.49125 1.33816 1.22100 0.91800 1.08029 0.90994 1.21967 0.92105 1.00238 1.00182 1.21865 0.98358 1.06618 0.97926 1.24466 0.84525 1.00255 0.98106 1.84102 1.17198 1.62308 1.41837 1.60666 1.57286 1.09896 1.03426 1.20655 0.98588 0.93794 0.87887 1.19079 0.93686 1.07569 0.98448 1.20445 0.94310 0.96955 0.95328 1.20222 0.98781 1.05353 0.97019 1.19410 0.91970 0.91168 0.87227 1.83981 1.36736 1.55531 1.31824 1.21319 0.89113 1.25186 1.11207 0.89097 1.25290 0.97172 0.96969 0.97066 1.70037 1.14234 1.37576 1.27862 0.85720 0.79348 0.78852 0.79556 1.19874 1.20216 1.19207 1.21116 0.95669 1.07457 1.01168 1.20576 0.97720 0.96000 0.94071 0.91928 0.91936 0.91812 0.91053 0.91177 0.74935 0.82372 0.82644 0.77276 0.83416 0.95217 0.91159 0.87117 0.86619 0.91992 0.85692 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.16 37.16 0.34 -0.93 16 2 C 0.07 0.55 2.75 -67.72 -0.19 0.36 16 3 H 0.08 0.65 7.80 -51.93 -0.40 0.25 16 4 C 0.13 1.23 5.37 -4.04 -0.02 1.21 16 5 N -0.70 -7.50 5.38 -61.63 -0.33 -7.84 16 6 C 0.60 7.65 7.79 -12.86 -0.10 7.55 16 7 O -0.53 -8.13 16.86 5.20 0.09 -8.04 16 8 C -0.08 -0.91 7.13 -36.80 -0.26 -1.17 16 9 C -0.12 -1.30 10.62 -39.39 -0.42 -1.72 16 10 C -0.23 -1.90 10.88 -39.89 -0.43 -2.34 16 11 C 0.00 -0.03 12.08 29.62 0.36 0.33 16 12 O -0.16 -1.71 10.40 4.99 0.05 -1.66 16 13 N -0.68 -7.09 5.68 -107.99 -0.61 -7.70 16 14 C 0.12 1.37 5.61 -4.98 -0.03 1.34 16 15 C -0.19 -2.92 5.40 -104.58 -0.56 -3.48 16 16 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 17 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 18 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 19 O -0.18 -5.02 9.76 0.03 0.00 -5.02 16 20 C -0.39 -10.86 9.49 30.89 0.29 -10.57 16 21 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -25.15 13.67 55.48 0.76 -24.40 16 24 Si 0.94 20.37 29.55 -169.99 -5.02 15.34 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 C -0.23 -4.96 9.17 -39.40 -0.36 -5.32 16 29 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 30 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 4.27 7.90 -40.82 -0.32 3.95 16 36 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.35 3.85 8.46 -39.29 -0.33 3.51 16 40 H 0.03 0.32 7.38 -51.92 -0.38 -0.06 16 41 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 46 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -32.63 396.61 -8.17 -40.80 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.18 Total: 10.01 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.90 Total: -17.47 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.19 Total: -39.94 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.14 Total: -14.72 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.63 -8.17 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001376674104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.195 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds