Wall clock time and date at job start Wed Apr 1 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46749 * 2 1 4 4 C 1.53000 * 109.47030 * 119.99362 * 2 1 3 5 5 N 1.46902 * 109.46995 * 175.00023 * 4 2 1 6 6 C 1.46897 * 110.99896 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47168 * 180.02562 * 6 5 4 8 8 C 1.38299 * 119.93217 * 269.73195 * 7 6 5 9 9 C 1.38093 * 120.06953 * 179.72477 * 8 7 6 10 10 C 1.38883 * 119.92808 * 0.56550 * 9 8 7 11 11 O 1.35754 * 120.06438 * 179.68623 * 10 9 8 12 12 C 1.34826 * 116.99724 * 174.49160 * 11 10 9 13 13 H 1.07998 * 120.00100 * 5.04739 * 12 11 10 14 14 C 1.38654 * 119.99970 * 185.05457 * 12 11 10 15 15 N 1.31557 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99959 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47303 * 60.00249 * 16 14 12 18 18 H 1.48499 * 109.46956 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47359 * 299.99968 * 16 14 12 20 20 C 1.38871 * 119.86468 * 359.70509 * 10 9 8 21 21 C 1.38101 * 119.93230 * 0.02562 * 20 10 9 22 22 N 1.46496 * 109.47344 * 239.99920 * 2 1 3 23 23 C 1.34779 * 120.00026 * 85.00082 * 22 2 1 24 24 O 1.21697 * 119.99812 * 359.97438 * 23 22 2 25 25 C 1.46652 * 120.00032 * 179.97438 * 23 22 2 26 26 C 1.36549 * 125.98879 * 179.71027 * 25 23 22 27 27 C 1.40367 * 106.70659 * 179.85016 * 26 25 23 28 28 C 1.35128 * 107.11303 * 0.41423 * 27 26 25 29 29 O 1.33926 * 108.77272 * 359.74418 * 28 27 26 30 30 H 1.09006 * 109.46749 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47942 * 300.00119 * 1 2 3 32 32 H 1.09006 * 109.47149 * 60.00553 * 1 2 3 33 33 H 1.09004 * 109.46650 * 55.00374 * 4 2 1 34 34 H 1.09000 * 109.47310 * 295.00851 * 4 2 1 35 35 H 1.00895 * 111.00199 * 303.96329 * 5 4 2 36 36 H 1.09002 * 109.46852 * 60.00232 * 6 5 4 37 37 H 1.09001 * 109.47162 * 300.00674 * 6 5 4 38 38 H 1.08005 * 119.96050 * 359.97425 * 8 7 6 39 39 H 1.07999 * 120.03730 * 180.26989 * 9 8 7 40 40 H 0.97002 * 120.00021 * 179.97438 * 15 14 12 41 41 H 1.08002 * 120.03853 * 179.97438 * 20 10 9 42 42 H 1.07997 * 119.96732 * 179.97438 * 21 20 10 43 43 H 0.96994 * 120.00085 * 264.99352 * 22 2 1 44 44 H 1.07998 * 126.64403 * 359.96895 * 26 25 23 45 45 H 1.08000 * 126.43697 * 180.15592 * 27 26 25 46 46 H 1.08001 * 125.61098 * 179.70541 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.0303 -1.5156 2.3763 7 6 5.5316 -1.6041 2.2809 8 6 6.1213 -2.6984 1.6748 9 6 7.4966 -2.7797 1.5808 10 6 8.2881 -1.7666 2.1062 11 8 9.6406 -1.8468 2.0209 12 6 10.3451 -0.7792 2.4473 13 1 9.8364 0.0539 2.9096 14 6 11.7226 -0.7507 2.2923 15 7 12.3423 -1.7656 1.7295 16 14 12.6986 0.7288 2.8824 17 1 12.4984 0.9031 4.3435 18 1 14.1411 0.5135 2.6031 19 1 12.2322 1.9456 2.1702 20 6 7.6932 -0.6717 2.7192 21 6 6.3171 -0.5936 2.8051 22 7 2.0184 -0.6906 -1.1961 23 6 2.1471 -0.0182 -2.3571 24 8 1.8572 1.1624 -2.4119 25 6 2.6366 -0.7094 -3.5543 26 6 2.8081 -0.1519 -4.7890 27 6 3.2940 -1.1681 -5.6266 28 6 3.3876 -2.2894 -4.8784 29 8 2.9906 -2.0091 -3.6304 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.6053 -1.7197 1.2952 34 1 1.7515 -0.1582 2.1370 35 1 3.7996 -1.2881 0.3434 36 1 3.6094 -2.5197 2.4296 37 1 3.7556 -0.9586 3.2720 38 1 5.5053 -3.4884 1.2710 39 1 7.9564 -3.6324 1.1035 40 1 13.3060 -1.7455 1.6207 41 1 8.3060 0.1175 3.1291 42 1 5.8538 0.2575 3.2821 43 1 2.2492 -1.6317 -1.1525 44 1 2.6103 0.8729 -5.0666 45 1 3.5419 -1.0726 -6.6734 46 1 3.7262 -3.2530 -5.2292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001406444127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:57 Heat of formation + Delta-G solvation = -21.243715 kcal Electronic energy + Delta-G solvation = -28593.665071 eV Core-core repulsion = 24450.801389 eV Total energy + Delta-G solvation = -4142.863682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.93923 -39.92622 -39.07460 -37.46968 -36.46218 -34.39791 -33.35098 -32.32422 -31.78082 -30.18536 -29.88471 -29.42779 -26.24607 -25.24475 -24.07687 -23.28140 -22.08393 -21.96980 -21.20776 -20.61615 -20.39492 -18.89602 -17.98436 -16.97276 -16.80375 -16.63209 -16.38816 -15.86316 -15.19099 -14.80620 -14.60965 -14.45719 -14.41209 -14.28713 -13.65821 -13.56548 -13.47969 -13.34984 -13.28265 -12.98833 -12.79669 -12.70397 -12.66461 -12.36014 -12.09577 -11.81438 -11.58910 -11.31705 -11.20148 -10.77540 -10.68835 -10.55108 -10.49677 -10.43918 -10.35117 -9.47951 -9.33484 -8.95512 -8.83396 -8.44707 -8.17321 -7.19262 -6.45165 -4.03952 0.79600 2.07812 2.21512 2.27894 2.39051 2.91790 2.96531 3.13690 3.15093 3.17637 3.97026 4.05309 4.37779 4.57661 4.61455 4.66577 4.75393 4.88922 5.02656 5.09423 5.21932 5.25803 5.32482 5.34228 5.37266 5.43560 5.45016 5.48062 5.58832 5.73052 5.75361 5.79609 5.87606 5.90796 6.01814 6.14850 6.20761 6.42222 6.51953 6.69201 6.89303 6.94684 7.08381 7.15823 7.19047 7.35069 7.41633 7.45270 7.82122 7.82590 8.00010 9.00567 9.70240 10.72786 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.002338 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.730204 B =11972.578971 C =13389.432300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.684 5.684 6 C 0.119 3.881 7 C -0.187 4.187 8 C -0.069 4.069 9 C -0.194 4.194 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.040 3.960 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.235 4.235 21 C -0.048 4.048 22 N -0.713 5.713 23 C 0.608 3.392 24 O -0.519 6.519 25 C -0.081 4.081 26 C -0.119 4.119 27 C -0.226 4.226 28 C -0.004 4.004 29 O -0.164 6.164 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.341 0.659 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.402 0.598 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.735 -1.234 -8.254 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.316 5.316 6 C -0.009 4.009 7 C -0.189 4.189 8 C -0.088 4.088 9 C -0.213 4.213 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.255 4.255 21 C -0.066 4.066 22 N -0.364 5.364 23 C 0.395 3.605 24 O -0.396 6.396 25 C -0.133 4.133 26 C -0.140 4.140 27 C -0.245 4.245 28 C -0.074 4.074 29 O -0.059 6.059 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.237 0.763 44 H 0.178 0.822 45 H 0.175 0.825 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -22.460 -0.187 -7.864 23.798 hybrid contribution 0.515 -0.601 -0.177 0.811 sum -21.945 -0.788 -8.041 23.385 Atomic orbital electron populations 1.22165 0.94775 1.02241 1.02980 1.21140 0.93689 0.98526 0.82778 0.88125 1.22294 0.89125 0.99001 0.97612 1.60531 1.07883 1.57664 1.05509 1.20628 0.91939 0.95559 0.92780 1.19089 0.93438 0.97580 1.08756 1.20457 0.93598 0.96719 0.97980 1.20156 0.92642 1.00506 1.08028 1.19398 0.85038 0.93100 0.92245 1.83973 1.11774 1.39750 1.72574 1.21290 0.89300 0.96529 1.39709 0.89085 1.25286 0.95857 0.98646 0.96671 1.70029 1.09855 1.29830 1.40112 0.85787 0.78459 0.80012 0.79232 1.19491 1.20271 1.19436 1.21171 0.94916 1.01130 1.08237 1.20575 0.92833 0.96463 0.96776 1.45916 1.66833 1.14125 1.09531 1.16483 0.77380 0.85628 0.81039 1.90886 1.50603 1.14148 1.83962 1.22092 1.11183 0.82746 0.97270 1.21997 0.99551 1.01219 0.91245 1.21886 1.07797 0.92900 1.01967 1.24448 1.00661 1.01029 0.81220 1.84059 1.63850 1.26453 1.31547 0.92451 0.91140 0.91768 0.94895 0.89303 0.84042 0.95374 0.91008 0.87586 0.86653 0.91967 0.85593 0.87467 0.76332 0.82242 0.82541 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.14 1.32 2.88 -67.93 -0.20 1.13 16 3 H 0.10 1.17 7.58 -51.93 -0.39 0.77 16 4 C 0.05 0.43 5.30 -3.82 -0.02 0.41 16 5 N -0.68 -8.05 6.48 -115.05 -0.75 -8.80 16 6 C 0.12 1.51 5.81 -4.98 -0.03 1.48 16 7 C -0.19 -3.11 5.40 -104.57 -0.56 -3.68 16 8 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 9 C -0.19 -4.07 9.99 -39.40 -0.39 -4.46 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 12 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 13 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 14 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 15 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 16 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 20 C -0.24 -5.16 9.17 -39.40 -0.36 -5.52 16 21 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 22 N -0.71 -6.91 4.35 -55.12 -0.24 -7.15 16 23 C 0.61 7.40 7.75 -12.86 -0.10 7.30 16 24 O -0.52 -7.80 16.53 5.19 0.09 -7.71 16 25 C -0.08 -0.91 7.13 -36.80 -0.26 -1.17 16 26 C -0.12 -1.23 10.62 -39.39 -0.42 -1.65 16 27 C -0.23 -1.83 10.87 -39.89 -0.43 -2.26 16 28 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 29 O -0.16 -1.60 10.40 5.00 0.05 -1.55 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.34 4.09 7.57 -39.29 -0.30 3.80 16 36 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.40 3.28 7.91 -40.82 -0.32 2.95 16 44 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 46 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -33.48 396.99 -8.24 -41.71 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.21 Total: 9.65 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.90 Total: -18.02 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.23 Total: -40.60 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.14 Total: -14.35 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.48 -8.24 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001406444127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.471 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds